Wall clock time and date at job start Tue Mar 31 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47497 * 2 1 4 4 C 1.50703 * 109.46884 * 240.00382 * 2 1 3 5 5 H 1.08000 * 119.99728 * 241.25150 * 4 2 1 6 6 C 1.37876 * 120.00244 * 61.25048 * 4 2 1 7 7 N 1.31517 * 120.00087 * 192.24701 * 6 4 2 8 8 Si 1.86797 * 119.99940 * 12.24076 * 6 4 2 9 9 H 1.48502 * 109.47175 * 84.55792 * 8 6 4 10 10 H 1.48499 * 109.47481 * 204.55745 * 8 6 4 11 11 H 1.48502 * 109.47270 * 324.56143 * 8 6 4 12 12 C 1.52998 * 109.47146 * 120.00594 * 2 1 3 13 13 N 1.46499 * 109.46724 * 299.99789 * 12 2 1 14 14 C 1.34776 * 119.99737 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99958 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00509 * 179.97438 * 14 13 12 17 17 C 1.46495 * 120.00817 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47465 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.46940 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.00190 * 101.82704 * 19 18 17 21 21 C 1.38207 * 120.00206 * 179.72263 * 20 19 18 22 22 C 1.38256 * 120.00223 * 0.27522 * 21 20 19 23 23 C 1.38210 * 119.99805 * 359.97438 * 22 21 20 24 24 C 1.38215 * 119.99936 * 282.01177 * 19 18 17 25 25 N 1.48022 * 120.00239 * 0.05185 * 24 19 18 26 26 O 1.21799 * 119.99699 * 174.78063 * 25 24 19 27 27 O 1.21801 * 119.99667 * 354.77423 * 25 24 19 28 28 H 1.08998 * 109.47013 * 308.90202 * 1 2 3 29 29 H 1.09005 * 109.47407 * 68.89728 * 1 2 3 30 30 H 1.08993 * 109.47156 * 188.89766 * 1 2 3 31 31 H 1.09002 * 109.47478 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47437 * 300.00223 * 3 2 1 33 33 H 1.09006 * 109.46510 * 60.00247 * 3 2 1 34 34 H 0.97000 * 120.00151 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47268 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.47146 * 59.99580 * 12 2 1 37 37 H 0.96994 * 120.00285 * 359.97438 * 13 12 2 38 38 H 0.97009 * 119.99037 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.47146 * 59.99455 * 17 16 14 40 40 H 1.09004 * 109.46788 * 300.00519 * 17 16 14 41 41 H 1.09003 * 109.46843 * 59.99733 * 18 17 16 42 42 H 1.08998 * 109.47036 * 299.99835 * 18 17 16 43 43 H 1.08003 * 119.99409 * 359.97438 * 20 19 18 44 44 H 1.08006 * 120.00158 * 180.24999 * 21 20 19 45 45 H 1.07999 * 120.00241 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.00443 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6364 -1.6001 -1.1316 6 6 1.7206 -0.2244 -2.4826 7 7 1.9459 -0.9609 -3.5487 8 14 0.9782 1.4800 -2.6648 9 1 2.0638 2.4930 -2.6878 10 1 0.2076 1.5515 -3.9322 11 1 0.0729 1.7507 -1.5191 12 6 2.0400 -0.7214 1.2491 13 7 1.5516 -0.0308 2.4453 14 6 1.8777 -0.4910 3.6694 15 8 2.5775 -1.4791 3.7809 16 7 1.4289 0.1445 4.7700 17 6 1.7837 -0.3554 6.1005 18 6 1.1503 0.5399 7.1674 19 6 1.5148 0.0252 8.5360 20 6 2.5099 0.6479 9.2664 21 6 2.8402 0.1794 10.5239 22 6 2.1796 -0.9155 11.0493 23 6 1.1884 -1.5413 10.3171 24 6 0.8570 -1.0719 9.0596 25 7 -0.2048 -1.7419 8.2755 26 8 -0.7182 -2.7638 8.6945 27 8 -0.5650 -1.2712 7.2114 28 1 -0.3633 0.6454 0.7997 29 1 -0.3634 0.3700 -0.9588 30 1 -0.3633 -1.0152 0.1589 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.7269 -0.6189 -4.4296 35 1 3.1299 -0.7218 1.2489 36 1 1.6766 -1.7490 1.2491 37 1 0.9943 0.7581 2.3564 38 1 0.8709 0.9330 4.6809 39 1 2.8676 -0.3465 6.2149 40 1 1.4146 -1.3746 6.2160 41 1 0.0664 0.5304 7.0528 42 1 1.5190 1.5591 7.0520 43 1 3.0262 1.5031 8.8558 44 1 3.6148 0.6684 11.0962 45 1 2.4380 -1.2819 12.0319 46 1 0.6726 -2.3970 10.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458464849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:54 Heat of formation + Delta-G solvation = 10.730914 kcal Electronic energy + Delta-G solvation = -28593.267288 eV Core-core repulsion = 24487.278881 eV Total energy + Delta-G solvation = -4105.988407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54653 -40.09626 -39.58056 -37.14768 -36.77894 -35.38723 -33.37093 -32.94106 -32.39449 -31.40029 -29.22231 -26.81274 -26.34603 -25.78067 -24.85667 -23.74104 -23.11474 -22.01360 -20.65952 -19.39605 -19.13284 -18.81799 -18.06523 -17.78763 -16.76549 -16.37072 -16.09384 -15.91919 -15.38309 -15.24368 -15.19810 -14.36393 -14.19153 -14.06412 -13.67564 -13.58555 -13.19067 -12.88824 -12.78825 -12.56034 -12.31209 -12.16813 -12.13721 -12.03550 -12.00448 -11.61890 -11.32613 -11.21270 -10.84114 -10.37574 -10.27735 -10.15157 -10.09331 -9.99395 -9.82895 -9.70735 -9.06892 -9.00917 -8.64710 -8.46104 -8.27872 -6.10155 -4.07902 -0.53852 0.35435 0.98268 1.10719 2.69649 3.00774 3.26589 3.33493 3.41260 3.61688 3.80799 3.82982 4.10447 4.33373 4.36645 4.38989 4.54948 4.68585 4.74112 4.75907 5.00601 5.19995 5.20769 5.25527 5.35588 5.48860 5.66639 5.74943 5.76711 5.82463 6.09512 6.13453 6.20942 6.40173 6.49918 6.56563 6.60134 6.68124 6.75632 6.88966 7.05397 7.24659 7.30988 7.40035 7.49090 7.77131 8.37912 8.52038 8.94697 9.00341 9.53204 11.02991 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.002139 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.995704 B =13089.010902 C =13434.685153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 C -0.144 4.144 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.287 1.287 10 H -0.306 1.306 11 H -0.246 1.246 12 C 0.161 3.839 13 N -0.737 5.737 14 C 0.701 3.299 15 O -0.597 6.597 16 N -0.748 5.748 17 C 0.157 3.843 18 C -0.116 4.116 19 C -0.009 4.009 20 C -0.116 4.116 21 C -0.065 4.065 22 C -0.123 4.123 23 C -0.053 4.053 24 C -0.043 4.043 25 N 0.028 4.972 26 O -0.166 6.166 27 O -0.145 6.145 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.392 0.608 38 H 0.395 0.605 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 7.630 32.109 33.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 C -0.201 4.201 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.717 3.283 9 H -0.215 1.215 10 H -0.234 1.234 11 H -0.172 1.172 12 C 0.038 3.962 13 N -0.392 5.392 14 C 0.400 3.600 15 O -0.475 6.475 16 N -0.405 5.405 17 C 0.032 3.968 18 C -0.154 4.154 19 C -0.011 4.011 20 C -0.135 4.135 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.072 4.072 24 C -0.126 4.126 25 N 0.546 4.454 26 O -0.379 6.379 27 O -0.361 6.361 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.039 6.955 32.352 33.091 hybrid contribution -1.093 1.475 -0.486 1.899 sum -1.054 8.430 31.866 32.979 Atomic orbital electron populations 1.22345 0.97817 1.00007 0.99982 1.18739 0.92559 0.92266 0.93810 1.22302 1.01158 0.98321 0.98358 1.20731 1.33754 1.12351 0.87958 0.90514 1.24985 0.94839 0.97278 0.95786 1.69942 1.48245 1.36298 0.98512 0.87339 0.79511 0.85307 0.76150 1.21466 1.23440 1.17193 1.21364 0.98273 0.95508 0.81086 1.45463 1.55891 1.33110 1.04698 1.15980 0.80518 0.82895 0.80563 1.90903 1.43015 1.27569 1.86036 1.44918 1.57599 1.33433 1.04533 1.20850 0.98731 0.97254 0.79959 1.21303 1.05028 1.00069 0.88956 1.19702 0.93172 0.91509 0.96705 1.21239 0.96546 1.01104 0.94576 1.21659 0.97368 0.94499 0.94768 1.21245 0.95736 0.96242 1.00919 1.21107 0.95915 0.99191 0.91004 1.21039 0.96700 0.99669 0.95168 1.43588 1.00779 1.00313 1.00752 1.94549 1.57071 1.12520 1.73756 1.94522 1.65798 1.66619 1.09187 0.95933 0.92387 0.93324 0.92826 0.94212 0.95233 0.92608 0.92268 0.92086 0.77384 0.77177 0.92026 0.91868 0.86668 0.89335 0.83376 0.83853 0.83544 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.52 37.16 0.28 -2.71 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.14 -2.94 7.58 37.16 0.28 -2.66 16 4 C -0.51 -13.89 8.62 -34.44 -0.30 -14.18 16 5 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 6 C 0.07 2.06 5.35 -17.82 -0.10 1.97 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.88 21.20 22.75 -169.99 -3.87 17.33 16 9 H -0.29 -6.84 7.07 56.52 0.40 -6.44 16 10 H -0.31 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.25 -5.34 4.61 56.52 0.26 -5.08 16 12 C 0.16 3.34 4.49 -4.04 -0.02 3.32 16 13 N -0.74 -12.55 5.01 -65.23 -0.33 -12.88 16 14 C 0.70 12.26 8.57 -86.92 -0.74 11.51 16 15 O -0.60 -13.12 16.34 5.28 0.09 -13.03 16 16 N -0.75 -9.42 5.56 -65.23 -0.36 -9.78 16 17 C 0.16 1.82 5.16 -4.04 -0.02 1.80 16 18 C -0.12 -0.90 4.74 -27.89 -0.13 -1.03 16 19 C -0.01 -0.07 5.15 -104.63 -0.54 -0.60 16 20 C -0.12 -0.55 9.67 -39.59 -0.38 -0.93 16 21 C -0.06 -0.22 10.05 -39.59 -0.40 -0.62 16 22 C -0.12 -0.47 10.05 -39.59 -0.40 -0.87 16 23 C -0.05 -0.34 9.56 -39.58 -0.38 -0.72 16 24 C -0.04 -0.38 6.81 -79.94 -0.54 -0.92 16 25 N 0.03 0.33 4.40 33.96 0.15 0.48 16 26 O -0.17 -2.15 18.46 -29.46 -0.54 -2.69 16 27 O -0.14 -1.89 13.62 -29.46 -0.40 -2.29 16 28 H 0.02 0.38 7.12 -51.93 -0.37 0.02 16 29 H 0.06 1.27 4.08 -51.93 -0.21 1.06 16 30 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.85 2.36 -51.93 -0.12 0.73 16 33 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 5.67 6.26 -40.82 -0.26 5.42 16 38 H 0.39 3.69 8.49 -40.82 -0.35 3.35 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 41 H 0.12 0.97 5.88 -51.93 -0.31 0.66 16 42 H 0.09 0.46 7.99 -51.93 -0.41 0.05 16 43 H 0.15 0.39 8.02 -52.48 -0.42 -0.03 16 44 H 0.14 0.08 8.06 -52.48 -0.42 -0.34 16 45 H 0.15 0.16 8.06 -52.49 -0.42 -0.26 16 46 H 0.15 0.82 7.62 -52.49 -0.40 0.42 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -35.44 367.12 -8.63 -44.07 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.20 Total: 5.59 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.46 Total: -6.11 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.23 Total: -48.41 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.86 Total: -18.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -3.87 Total: 17.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.44 -8.63 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458464849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.804 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds