Wall clock time and date at job start Tue Mar 31 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47497 * 2 1 4 4 C 1.50703 * 109.46884 * 240.00382 * 2 1 3 5 5 H 1.08000 * 119.99728 * 241.25150 * 4 2 1 6 6 C 1.37876 * 120.00244 * 61.25048 * 4 2 1 7 7 N 1.31517 * 120.00087 * 192.24701 * 6 4 2 8 8 Si 1.86797 * 119.99940 * 12.24076 * 6 4 2 9 9 H 1.48502 * 109.47175 * 84.55792 * 8 6 4 10 10 H 1.48499 * 109.47481 * 204.55745 * 8 6 4 11 11 H 1.48502 * 109.47270 * 324.56143 * 8 6 4 12 12 C 1.52998 * 109.47146 * 120.00594 * 2 1 3 13 13 N 1.46499 * 109.46724 * 299.99789 * 12 2 1 14 14 C 1.34776 * 119.99737 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99958 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00509 * 179.97438 * 14 13 12 17 17 C 1.46495 * 120.00817 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47465 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.46940 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.00190 * 101.82704 * 19 18 17 21 21 C 1.38207 * 120.00206 * 179.72263 * 20 19 18 22 22 C 1.38256 * 120.00223 * 0.27522 * 21 20 19 23 23 C 1.38210 * 119.99805 * 359.97438 * 22 21 20 24 24 C 1.38215 * 119.99936 * 282.01177 * 19 18 17 25 25 N 1.48022 * 120.00239 * 0.05185 * 24 19 18 26 26 O 1.21799 * 119.99699 * 174.78063 * 25 24 19 27 27 O 1.21801 * 119.99667 * 354.77423 * 25 24 19 28 28 H 1.08998 * 109.47013 * 308.90202 * 1 2 3 29 29 H 1.09005 * 109.47407 * 68.89728 * 1 2 3 30 30 H 1.08993 * 109.47156 * 188.89766 * 1 2 3 31 31 H 1.09002 * 109.47478 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47437 * 300.00223 * 3 2 1 33 33 H 1.09006 * 109.46510 * 60.00247 * 3 2 1 34 34 H 0.97000 * 120.00151 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47268 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.47146 * 59.99580 * 12 2 1 37 37 H 0.96994 * 120.00285 * 359.97438 * 13 12 2 38 38 H 0.97009 * 119.99037 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.47146 * 59.99455 * 17 16 14 40 40 H 1.09004 * 109.46788 * 300.00519 * 17 16 14 41 41 H 1.09003 * 109.46843 * 59.99733 * 18 17 16 42 42 H 1.08998 * 109.47036 * 299.99835 * 18 17 16 43 43 H 1.08003 * 119.99409 * 359.97438 * 20 19 18 44 44 H 1.08006 * 120.00158 * 180.24999 * 21 20 19 45 45 H 1.07999 * 120.00241 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.00443 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6364 -1.6001 -1.1316 6 6 1.7206 -0.2244 -2.4826 7 7 1.9459 -0.9609 -3.5487 8 14 0.9782 1.4800 -2.6648 9 1 2.0638 2.4930 -2.6878 10 1 0.2076 1.5515 -3.9322 11 1 0.0729 1.7507 -1.5191 12 6 2.0400 -0.7214 1.2491 13 7 1.5516 -0.0308 2.4453 14 6 1.8777 -0.4910 3.6694 15 8 2.5775 -1.4791 3.7809 16 7 1.4289 0.1445 4.7700 17 6 1.7837 -0.3554 6.1005 18 6 1.1503 0.5399 7.1674 19 6 1.5148 0.0252 8.5360 20 6 2.5099 0.6479 9.2664 21 6 2.8402 0.1794 10.5239 22 6 2.1796 -0.9155 11.0493 23 6 1.1884 -1.5413 10.3171 24 6 0.8570 -1.0719 9.0596 25 7 -0.2048 -1.7419 8.2755 26 8 -0.7182 -2.7638 8.6945 27 8 -0.5650 -1.2712 7.2114 28 1 -0.3633 0.6454 0.7997 29 1 -0.3634 0.3700 -0.9588 30 1 -0.3633 -1.0152 0.1589 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.7269 -0.6189 -4.4296 35 1 3.1299 -0.7218 1.2489 36 1 1.6766 -1.7490 1.2491 37 1 0.9943 0.7581 2.3564 38 1 0.8709 0.9330 4.6809 39 1 2.8676 -0.3465 6.2149 40 1 1.4146 -1.3746 6.2160 41 1 0.0664 0.5304 7.0528 42 1 1.5190 1.5591 7.0520 43 1 3.0262 1.5031 8.8558 44 1 3.6148 0.6684 11.0962 45 1 2.4380 -1.2819 12.0319 46 1 0.6726 -2.3970 10.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458464849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:53 Heat of formation + Delta-G solvation = -14.974685 kcal Electronic energy + Delta-G solvation = -28594.381967 eV Core-core repulsion = 24487.278881 eV Total energy + Delta-G solvation = -4107.103085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32777 -41.11364 -40.46096 -38.59713 -37.85065 -36.42155 -34.99803 -33.96168 -33.22711 -32.85826 -30.00685 -27.99527 -27.70412 -27.24482 -26.72646 -24.59770 -23.67573 -22.64580 -22.04747 -20.91477 -20.07888 -19.68132 -19.36014 -18.62468 -18.03052 -17.38834 -17.08650 -17.06106 -16.93188 -16.45222 -15.72672 -15.50736 -15.39021 -15.30748 -14.84970 -14.60925 -14.42414 -14.27012 -14.19943 -13.94109 -13.76011 -13.24521 -13.13578 -12.96099 -12.83638 -12.50427 -12.42638 -12.36616 -12.22110 -12.13882 -11.88744 -11.72675 -11.61422 -11.36747 -11.01246 -10.61551 -10.56262 -10.37835 -10.33561 -10.15255 -9.69057 -8.27549 -6.30346 -1.22592 -0.02424 0.32304 0.44292 1.38792 1.39781 1.53402 1.74659 2.20206 2.34721 2.37275 3.08337 3.22536 3.37175 3.53882 3.77932 3.91729 3.98491 4.06272 4.10321 4.10884 4.26411 4.36062 4.44113 4.47387 4.61822 4.76482 4.79062 4.84915 4.87755 4.89741 4.96708 4.98384 5.09284 5.11279 5.17183 5.21094 5.29754 5.45185 5.48776 5.58300 5.60357 5.75208 5.82321 6.08021 6.33216 6.47992 6.74095 7.18832 7.34589 7.64060 8.89724 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.002139 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.995704 B =13089.010902 C =13434.685153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.143 4.143 4 C -0.516 4.516 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.316 1.316 11 H -0.198 1.198 12 C 0.177 3.823 13 N -0.723 5.723 14 C 0.698 3.302 15 O -0.647 6.647 16 N -0.724 5.724 17 C 0.159 3.841 18 C -0.104 4.104 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.050 4.050 22 C -0.114 4.114 23 C -0.066 4.066 24 C -0.069 4.069 25 N 0.030 4.970 26 O -0.206 6.206 27 O -0.168 6.168 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.264 0.736 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.410 0.590 38 H 0.415 0.585 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.179 0.821 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 12.040 35.718 37.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.200 4.200 4 C -0.554 4.554 5 H 0.043 0.957 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.246 1.246 11 H -0.122 1.122 12 C 0.052 3.948 13 N -0.379 5.379 14 C 0.397 3.603 15 O -0.529 6.529 16 N -0.382 5.382 17 C 0.034 3.966 18 C -0.141 4.141 19 C -0.027 4.027 20 C -0.131 4.131 21 C -0.068 4.068 22 C -0.132 4.132 23 C -0.085 4.085 24 C -0.153 4.153 25 N 0.541 4.459 26 O -0.413 6.413 27 O -0.383 6.383 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.247 0.753 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.194 0.806 44 H 0.200 0.800 45 H 0.196 0.804 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.010 11.386 36.029 37.786 hybrid contribution -0.931 0.016 -1.446 1.720 sum -0.922 11.401 34.584 36.426 Atomic orbital electron populations 1.22275 0.96052 1.00594 1.01121 1.18664 0.93810 0.93335 0.91562 1.22226 1.00976 0.96494 1.00293 1.21036 1.32689 1.11088 0.90635 0.95665 1.25927 0.95653 1.01781 0.95127 1.70115 1.50729 1.38783 0.99222 0.86346 0.79569 0.79472 0.77150 1.20721 1.24614 1.12194 1.20865 0.97016 0.94467 0.82415 1.45045 1.56024 1.33346 1.03504 1.16163 0.80182 0.82498 0.81431 1.90878 1.45299 1.29942 1.86777 1.44703 1.56582 1.33253 1.03619 1.20880 0.98756 0.96692 0.80283 1.21182 1.04272 1.00771 0.87901 1.19845 0.94330 0.91622 0.96912 1.21649 0.95218 1.01369 0.94823 1.22190 0.96960 0.93444 0.94161 1.21695 0.94028 0.95747 1.01719 1.21371 0.96950 0.99722 0.90495 1.21347 0.96911 1.00960 0.96059 1.44095 1.01143 1.00010 1.00664 1.94517 1.58716 1.13890 1.74133 1.94479 1.66769 1.66708 1.10352 0.91365 0.93257 0.94396 0.93494 0.94712 0.90521 0.92723 0.94198 0.94891 0.75271 0.74764 0.92288 0.95243 0.87551 0.85848 0.80565 0.79962 0.80363 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 7.52 71.98 0.54 -5.00 16 2 C 0.03 1.19 0.50 -52.93 -0.03 1.16 16 3 C -0.14 -5.32 7.58 71.98 0.55 -4.77 16 4 C -0.52 -29.10 8.62 25.60 0.22 -28.88 16 5 H 0.02 1.62 7.99 -2.91 -0.02 1.60 16 6 C 0.01 0.69 5.35 84.65 0.45 1.15 16 7 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 8 Si 0.95 42.86 22.75 68.60 1.56 44.42 16 9 H -0.28 -12.33 7.07 99.48 0.70 -11.63 16 10 H -0.32 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.20 -7.50 4.61 99.48 0.46 -7.05 16 12 C 0.18 7.42 4.49 86.38 0.39 7.81 16 13 N -0.72 -23.25 5.01 -478.54 -2.40 -25.64 16 14 C 0.70 23.79 8.57 179.05 1.53 25.32 16 15 O -0.65 -29.05 16.34 -4.01 -0.07 -29.11 16 16 N -0.72 -16.86 5.56 -478.53 -2.66 -19.52 16 17 C 0.16 3.52 5.16 86.38 0.45 3.97 16 18 C -0.10 -1.38 4.74 29.85 0.14 -1.24 16 19 C -0.03 -0.32 5.15 -19.87 -0.10 -0.42 16 20 C -0.11 -0.58 9.67 22.27 0.22 -0.37 16 21 C -0.05 -0.09 10.05 22.27 0.22 0.14 16 22 C -0.11 -0.45 10.05 22.27 0.22 -0.23 16 23 C -0.07 -0.77 9.56 22.27 0.21 -0.56 16 24 C -0.07 -1.21 6.81 36.38 0.25 -0.96 16 25 N 0.03 0.77 4.40 -46.46 -0.20 0.56 16 26 O -0.21 -5.82 18.46 18.89 0.35 -5.48 16 27 O -0.17 -4.61 13.62 18.89 0.26 -4.35 16 28 H 0.07 2.02 7.12 -2.39 -0.02 2.00 16 29 H 0.05 1.99 4.08 -2.38 -0.01 1.99 16 30 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.34 2.36 -2.39 -0.01 1.33 16 33 H 0.08 2.13 6.86 -2.38 -0.02 2.11 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 10.09 6.26 -92.71 -0.58 9.51 16 38 H 0.42 6.32 8.49 -92.70 -0.79 5.53 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.03 0.87 6.64 -2.38 -0.02 0.85 16 41 H 0.11 1.65 5.88 -2.39 -0.01 1.63 16 42 H 0.12 0.75 7.99 -2.39 -0.02 0.73 16 43 H 0.18 -0.08 8.02 -2.91 -0.02 -0.10 16 44 H 0.18 -1.02 8.06 -2.91 -0.02 -1.04 16 45 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.15 1.66 7.62 -2.91 -0.02 1.64 16 Total: -1.00 -86.09 367.12 1.82 -84.27 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.58 Total: 17.32 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.26 Total: -2.88 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.96 Total: -104.18 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: 0.54 Total: -38.94 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.56 Total: 44.42 kcal Total: -86.09 1.82 -84.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458464849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.292 kcal (2) G-P(sol) polarization free energy of solvation -86.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds