Wall clock time and date at job start Tue Mar 31 2020 18:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.50700 * 109.46957 * 240.00129 * 2 1 3 5 5 H 1.07994 * 120.00042 * 239.99218 * 4 2 1 6 6 C 1.37881 * 119.99902 * 60.00204 * 4 2 1 7 7 N 1.31513 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47309 * 59.99502 * 8 6 4 10 10 H 1.48496 * 109.47115 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47277 * 299.99504 * 8 6 4 12 12 C 1.52995 * 109.47400 * 119.99865 * 2 1 3 13 13 N 1.46500 * 109.47091 * 300.00226 * 12 2 1 14 14 C 1.34778 * 119.99495 * 179.97438 * 13 12 2 15 15 O 1.21582 * 120.00579 * 0.02562 * 14 13 12 16 16 N 1.34786 * 119.99659 * 179.97438 * 14 13 12 17 17 C 1.46491 * 119.99775 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46989 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47280 * 179.97438 * 18 17 16 20 20 C 1.38257 * 120.00171 * 270.02305 * 19 18 17 21 21 C 1.38217 * 120.00124 * 179.97438 * 20 19 18 22 22 C 1.38258 * 119.99907 * 359.76573 * 21 20 19 23 23 C 1.38216 * 119.99766 * 0.46893 * 22 21 20 24 24 N 1.48026 * 119.99744 * 179.78745 * 23 22 21 25 25 O 1.21799 * 119.99956 * 179.72731 * 24 23 22 26 26 O 1.21802 * 120.00016 * 359.44228 * 24 23 22 27 27 C 1.38215 * 120.00134 * 89.99890 * 19 18 17 28 28 H 1.08998 * 109.46709 * 299.99605 * 1 2 3 29 29 H 1.08993 * 109.47085 * 60.00112 * 1 2 3 30 30 H 1.08994 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47159 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46700 * 300.00063 * 3 2 1 33 33 H 1.08996 * 109.46792 * 60.00175 * 3 2 1 34 34 H 0.96999 * 119.99599 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47421 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.46802 * 59.99995 * 12 2 1 37 37 H 0.96993 * 120.00104 * 359.97438 * 13 12 2 38 38 H 0.96997 * 119.99490 * 359.97438 * 16 14 13 39 39 H 1.09008 * 109.47301 * 60.00303 * 17 16 14 40 40 H 1.09000 * 109.47545 * 299.99949 * 17 16 14 41 41 H 1.09000 * 109.47061 * 60.00035 * 18 17 16 42 42 H 1.09000 * 109.46981 * 300.00350 * 18 17 16 43 43 H 1.08001 * 120.00180 * 359.97438 * 20 19 18 44 44 H 1.07997 * 119.99804 * 179.97438 * 21 20 19 45 45 H 1.07996 * 120.00234 * 180.24572 * 22 21 20 46 46 H 1.08005 * 119.99743 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1208 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6694 15 8 2.5761 -1.4799 3.7810 16 7 1.4282 0.1443 4.7700 17 6 1.7822 -0.3563 6.1004 18 6 1.1500 0.5399 7.1673 19 6 1.5136 0.0248 8.5360 20 6 0.7023 -0.9022 9.1638 21 6 1.0361 -1.3751 10.4189 22 6 2.1839 -0.9248 11.0446 23 6 2.9923 0.0054 10.4190 24 7 4.2187 0.4910 11.0909 25 8 4.9338 1.3071 10.5376 26 8 4.5099 0.0784 12.1993 27 6 2.6584 0.4785 9.1636 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7082 1.1609 -3.4844 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7488 1.2492 37 1 0.9944 0.7582 2.3564 38 1 0.8714 0.9335 4.6809 39 1 2.8662 -0.3479 6.2153 40 1 1.4124 -1.3751 6.2157 41 1 0.0661 0.5321 7.0527 42 1 1.5201 1.5587 7.0519 43 1 -0.1923 -1.2568 8.6735 44 1 0.4021 -2.0988 10.9094 45 1 2.4468 -1.2973 12.0236 46 1 3.2922 1.2026 8.6732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458565917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:56 Heat of formation + Delta-G solvation = -20.093465 kcal Electronic energy + Delta-G solvation = -27540.809685 eV Core-core repulsion = 23433.484633 eV Total energy + Delta-G solvation = -4107.325052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51729 -40.24890 -39.57997 -36.90319 -36.69314 -35.56880 -33.44046 -33.04342 -32.36313 -30.86734 -28.99892 -26.98782 -25.74775 -25.66217 -25.03627 -23.75198 -23.07343 -21.86236 -20.73322 -19.33515 -18.95527 -18.80616 -18.07637 -17.85258 -17.13425 -16.35308 -16.17617 -15.81961 -15.39255 -15.07963 -14.74650 -14.36909 -14.13661 -14.06173 -13.66771 -13.49976 -12.91308 -12.88675 -12.77044 -12.35871 -12.20614 -12.10151 -11.91229 -11.75844 -11.48377 -11.45881 -11.37234 -11.21021 -10.86022 -10.74152 -10.40357 -10.23117 -10.12804 -9.88882 -9.72824 -9.65225 -9.33428 -9.10493 -8.81843 -8.43238 -8.24442 -6.03610 -4.13504 -0.58359 0.35267 0.93162 1.02006 2.68158 2.98319 3.29260 3.33499 3.37555 3.56638 3.79748 3.90915 4.16485 4.29029 4.34868 4.37401 4.50300 4.57107 4.72166 4.78993 4.96116 5.15972 5.18851 5.23183 5.35685 5.44095 5.64318 5.67566 5.76679 6.05430 6.17669 6.33853 6.46787 6.50828 6.76741 6.80002 6.87146 7.00780 7.05154 7.23675 7.28302 7.37115 7.53772 7.68236 7.99226 8.10385 8.35558 8.42124 8.85833 8.97264 9.52205 10.97780 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001699 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.366836 B =16471.500754 C =16804.669395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.697 3.303 15 O -0.599 6.599 16 N -0.756 5.756 17 C 0.146 3.854 18 C -0.094 4.094 19 C -0.074 4.074 20 C -0.061 4.061 21 C -0.114 4.114 22 C -0.059 4.059 23 C -0.042 4.042 24 N 0.028 4.972 25 O -0.157 6.157 26 O -0.162 6.162 27 C -0.050 4.050 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 1.042 25.406 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.397 3.603 15 O -0.478 6.478 16 N -0.413 5.413 17 C 0.021 3.979 18 C -0.132 4.132 19 C -0.075 4.075 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.078 4.078 23 C -0.125 4.125 24 N 0.547 4.453 25 O -0.374 6.374 26 O -0.377 6.377 27 C -0.069 4.069 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.163 0.837 44 H 0.167 0.833 45 H 0.171 0.829 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.858 -0.021 24.992 25.460 hybrid contribution 0.158 0.394 -0.679 0.801 sum -4.700 0.374 24.312 24.765 Atomic orbital electron populations 1.21816 0.97779 0.99130 0.99973 1.18368 0.92798 0.92796 0.90548 1.21819 0.98611 0.98332 0.99981 1.20940 1.31510 1.12115 0.89849 0.92463 1.24881 0.94874 0.94939 0.98854 1.69791 1.36620 1.22755 1.23324 0.86624 0.79260 0.79777 0.82141 1.20294 1.21347 1.20265 1.21601 0.97925 0.95418 0.82369 1.45511 1.55544 1.32978 1.04575 1.16055 0.80538 0.83007 0.80685 1.90894 1.43007 1.27772 1.86080 1.45061 1.57986 1.33526 1.04763 1.21023 0.99989 0.97061 0.79870 1.20867 1.02554 1.00387 0.89397 1.19708 0.93910 0.97275 0.96651 1.21636 0.98972 0.93166 0.94112 1.21242 0.96177 1.00553 0.95304 1.21109 0.92853 0.92993 1.00871 1.21123 0.89788 1.05024 0.96567 1.43644 1.01824 0.99210 1.00595 1.94569 1.48481 1.27206 1.67101 1.94539 1.77167 1.60576 1.05440 1.21013 0.96299 0.98090 0.91470 0.97598 0.89637 0.95474 0.95434 0.89642 0.97574 0.92961 0.92919 0.92938 0.77162 0.77205 0.91572 0.91520 0.89135 0.89282 0.83662 0.83329 0.82948 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 13 N -0.73 -12.58 4.96 -65.22 -0.32 -12.91 16 14 C 0.70 11.75 8.57 -86.91 -0.74 11.01 16 15 O -0.60 -12.67 16.34 5.29 0.09 -12.59 16 16 N -0.76 -8.52 5.56 -65.22 -0.36 -8.89 16 17 C 0.15 1.35 5.66 -4.04 -0.02 1.33 16 18 C -0.09 -0.49 5.46 -27.88 -0.15 -0.65 16 19 C -0.07 -0.42 5.13 -104.63 -0.54 -0.96 16 20 C -0.06 -0.27 9.70 -39.58 -0.38 -0.65 16 21 C -0.11 -0.47 10.05 -39.58 -0.40 -0.87 16 22 C -0.06 -0.36 9.56 -39.58 -0.38 -0.74 16 23 C -0.04 -0.36 6.85 -79.95 -0.55 -0.90 16 24 N 0.03 0.31 4.45 33.96 0.15 0.46 16 25 O -0.16 -1.92 18.45 -29.46 -0.54 -2.47 16 26 O -0.16 -1.89 18.45 -29.46 -0.54 -2.43 16 27 C -0.05 -0.36 9.21 -39.58 -0.36 -0.73 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.08 2.08 6.07 -51.93 -0.32 1.77 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 2.09 6.07 -51.93 -0.32 1.78 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.39 5.96 6.18 -40.82 -0.25 5.71 16 38 H 0.39 3.25 8.49 -40.82 -0.35 2.90 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 45 H 0.15 0.75 7.61 -52.49 -0.40 0.35 16 46 H 0.16 1.06 7.61 -52.48 -0.40 0.67 16 LS Contribution 385.87 15.07 5.82 5.82 Total: -1.00 -31.90 385.87 -10.12 -42.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.50 Total: 3.89 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.39 Total: -5.69 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.02 Total: -44.10 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.00 Total: -17.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.90 -10.12 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458565917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.929 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds