Wall clock time and date at job start Tue Mar 31 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.50700 * 109.46957 * 240.00129 * 2 1 3 5 5 H 1.07994 * 120.00042 * 239.99218 * 4 2 1 6 6 C 1.37881 * 119.99902 * 60.00204 * 4 2 1 7 7 N 1.31513 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47309 * 59.99502 * 8 6 4 10 10 H 1.48496 * 109.47115 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47277 * 299.99504 * 8 6 4 12 12 C 1.52995 * 109.47400 * 119.99865 * 2 1 3 13 13 N 1.46500 * 109.47091 * 300.00226 * 12 2 1 14 14 C 1.34778 * 119.99495 * 179.97438 * 13 12 2 15 15 O 1.21582 * 120.00579 * 0.02562 * 14 13 12 16 16 N 1.34786 * 119.99659 * 179.97438 * 14 13 12 17 17 C 1.46491 * 119.99775 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46989 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47280 * 179.97438 * 18 17 16 20 20 C 1.38257 * 120.00171 * 270.02305 * 19 18 17 21 21 C 1.38217 * 120.00124 * 179.97438 * 20 19 18 22 22 C 1.38258 * 119.99907 * 359.76573 * 21 20 19 23 23 C 1.38216 * 119.99766 * 0.46893 * 22 21 20 24 24 N 1.48026 * 119.99744 * 179.78745 * 23 22 21 25 25 O 1.21799 * 119.99956 * 179.72731 * 24 23 22 26 26 O 1.21802 * 120.00016 * 359.44228 * 24 23 22 27 27 C 1.38215 * 120.00134 * 89.99890 * 19 18 17 28 28 H 1.08998 * 109.46709 * 299.99605 * 1 2 3 29 29 H 1.08993 * 109.47085 * 60.00112 * 1 2 3 30 30 H 1.08994 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47159 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46700 * 300.00063 * 3 2 1 33 33 H 1.08996 * 109.46792 * 60.00175 * 3 2 1 34 34 H 0.96999 * 119.99599 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47421 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.46802 * 59.99995 * 12 2 1 37 37 H 0.96993 * 120.00104 * 359.97438 * 13 12 2 38 38 H 0.96997 * 119.99490 * 359.97438 * 16 14 13 39 39 H 1.09008 * 109.47301 * 60.00303 * 17 16 14 40 40 H 1.09000 * 109.47545 * 299.99949 * 17 16 14 41 41 H 1.09000 * 109.47061 * 60.00035 * 18 17 16 42 42 H 1.09000 * 109.46981 * 300.00350 * 18 17 16 43 43 H 1.08001 * 120.00180 * 359.97438 * 20 19 18 44 44 H 1.07997 * 119.99804 * 179.97438 * 21 20 19 45 45 H 1.07996 * 120.00234 * 180.24572 * 22 21 20 46 46 H 1.08005 * 119.99743 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1208 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6694 15 8 2.5761 -1.4799 3.7810 16 7 1.4282 0.1443 4.7700 17 6 1.7822 -0.3563 6.1004 18 6 1.1500 0.5399 7.1673 19 6 1.5136 0.0248 8.5360 20 6 0.7023 -0.9022 9.1638 21 6 1.0361 -1.3751 10.4189 22 6 2.1839 -0.9248 11.0446 23 6 2.9923 0.0054 10.4190 24 7 4.2187 0.4910 11.0909 25 8 4.9338 1.3071 10.5376 26 8 4.5099 0.0784 12.1993 27 6 2.6584 0.4785 9.1636 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7082 1.1609 -3.4844 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7488 1.2492 37 1 0.9944 0.7582 2.3564 38 1 0.8714 0.9335 4.6809 39 1 2.8662 -0.3479 6.2153 40 1 1.4124 -1.3751 6.2157 41 1 0.0661 0.5321 7.0527 42 1 1.5201 1.5587 7.0519 43 1 -0.1923 -1.2568 8.6735 44 1 0.4021 -2.0988 10.9094 45 1 2.4468 -1.2973 12.0236 46 1 3.2922 1.2026 8.6732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458565917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:55 Heat of formation + Delta-G solvation = -38.951538 kcal Electronic energy + Delta-G solvation = -27541.627432 eV Core-core repulsion = 23433.484633 eV Total energy + Delta-G solvation = -4108.142799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.28136 -41.10116 -40.55147 -38.29187 -37.72813 -36.54793 -34.99549 -33.99409 -32.86654 -32.55637 -29.76200 -27.66889 -27.53513 -27.41384 -26.62632 -24.62100 -23.62094 -22.45882 -22.03048 -20.57034 -20.08580 -19.77139 -19.27281 -18.63848 -17.74650 -17.52926 -17.28482 -16.97530 -16.60900 -16.42153 -15.65271 -15.44819 -15.23393 -15.11340 -14.69808 -14.40227 -14.35142 -14.21647 -13.96460 -13.23448 -13.18057 -13.07363 -12.96294 -12.79191 -12.69155 -12.61461 -12.56514 -12.37782 -12.35982 -12.23313 -12.13128 -12.12391 -11.45901 -11.39343 -11.13284 -10.69117 -10.56949 -10.39535 -10.29130 -10.19256 -9.64427 -8.00926 -6.16077 -1.26793 -0.07332 0.28800 0.36310 1.44846 1.46182 1.52418 1.80224 2.22132 2.29846 2.47327 3.22661 3.24690 3.46762 3.54209 3.78667 3.88801 3.95669 4.01309 4.09255 4.27950 4.44576 4.51320 4.55604 4.69515 4.71050 4.74177 4.87943 4.98903 5.01752 5.05834 5.08756 5.11011 5.13499 5.22784 5.27405 5.40656 5.50659 5.53375 5.65170 5.69031 5.70011 6.10803 6.18293 6.24513 6.41231 6.45812 6.87941 7.19868 7.51317 7.66104 8.97631 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001699 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.366836 B =16471.500754 C =16804.669395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.645 6.645 16 N -0.732 5.732 17 C 0.143 3.857 18 C -0.080 4.080 19 C -0.078 4.078 20 C -0.049 4.049 21 C -0.106 4.106 22 C -0.062 4.062 23 C -0.067 4.067 24 N 0.030 4.970 25 O -0.197 6.197 26 O -0.174 6.174 27 C -0.060 4.060 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.407 0.593 38 H 0.414 0.586 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.161 0.839 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 0.999 26.501 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.204 1.204 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.390 5.390 17 C 0.019 3.981 18 C -0.118 4.118 19 C -0.080 4.080 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.081 4.081 23 C -0.150 4.150 24 N 0.543 4.457 25 O -0.407 6.407 26 O -0.390 6.390 27 C -0.079 4.079 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.243 0.757 38 H 0.251 0.749 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.194 0.806 44 H 0.201 0.799 45 H 0.179 0.821 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.349 0.024 26.106 27.121 hybrid contribution 0.845 0.335 -0.962 1.324 sum -6.504 0.360 25.144 25.974 Atomic orbital electron populations 1.21645 0.96891 0.98653 1.00435 1.18371 0.93434 0.93028 0.90166 1.21659 0.97803 0.97846 1.00428 1.21240 1.31695 1.12162 0.91597 0.93839 1.25437 0.95215 0.95637 1.00893 1.69893 1.36904 1.23221 1.23619 0.85846 0.78571 0.78851 0.79693 1.20280 1.20826 1.20415 1.21101 0.96565 0.94702 0.83344 1.45178 1.55819 1.33188 1.03869 1.16225 0.80186 0.82694 0.81453 1.90869 1.45082 1.30015 1.86774 1.44861 1.56829 1.33302 1.03972 1.21154 0.99268 0.97977 0.79708 1.20784 1.03857 0.99733 0.87395 1.19789 0.93538 0.97793 0.96834 1.22080 0.99206 0.91453 0.93915 1.21665 0.95312 1.00284 0.95111 1.21418 0.93100 0.92207 1.01345 1.21353 0.89247 1.06937 0.97442 1.44071 1.02489 0.98692 1.00410 1.94549 1.50009 1.28717 1.67399 1.94499 1.77767 1.60573 1.06145 1.21120 0.97067 0.98433 0.91313 0.94200 0.91977 0.96367 0.96548 0.91941 0.94247 0.93042 0.94926 0.94648 0.75651 0.74918 0.93610 0.91970 0.86305 0.88306 0.80589 0.79932 0.82111 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 4 C -0.53 -27.64 8.01 25.60 0.21 -27.43 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.46 5.15 84.66 0.44 1.90 16 7 N -0.90 -47.10 9.35 21.45 0.20 -46.90 16 8 Si 0.94 42.27 29.54 68.60 2.03 44.29 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.17 7.03 4.50 86.38 0.39 7.42 16 13 N -0.73 -23.71 4.96 -478.54 -2.37 -26.09 16 14 C 0.69 22.40 8.57 179.05 1.53 23.93 16 15 O -0.65 -27.20 16.34 -3.97 -0.06 -27.27 16 16 N -0.73 -14.54 5.56 -478.52 -2.66 -17.20 16 17 C 0.14 2.33 5.66 86.38 0.49 2.82 16 18 C -0.08 -0.56 5.46 29.85 0.16 -0.40 16 19 C -0.08 -0.67 5.13 -19.87 -0.10 -0.78 16 20 C -0.05 -0.22 9.70 22.27 0.22 -0.01 16 21 C -0.11 -0.48 10.05 22.27 0.22 -0.25 16 22 C -0.06 -0.64 9.56 22.27 0.21 -0.43 16 23 C -0.07 -1.10 6.85 36.37 0.25 -0.85 16 24 N 0.03 0.70 4.45 -46.46 -0.21 0.49 16 25 O -0.20 -5.22 18.45 18.89 0.35 -4.87 16 26 O -0.17 -4.21 18.45 18.88 0.35 -3.86 16 27 C -0.06 -0.83 9.21 22.27 0.21 -0.62 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 29 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 33 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 34 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 11.05 6.18 -92.71 -0.57 10.48 16 38 H 0.41 5.19 8.49 -92.71 -0.79 4.40 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.24 8.08 -2.39 -0.02 0.22 16 42 H 0.10 0.56 8.09 -2.39 -0.02 0.54 16 43 H 0.18 -0.21 8.06 -2.91 -0.02 -0.24 16 44 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 45 H 0.16 1.33 7.61 -2.91 -0.02 1.31 16 46 H 0.15 2.12 7.61 -2.91 -0.02 2.10 16 Total: -1.00 -72.26 385.87 2.63 -69.63 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.34 Total: 13.28 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.36 Total: -1.50 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.04 Total: -89.70 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: 0.63 Total: -36.00 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.26 2.63 -69.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458565917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.678 kcal (2) G-P(sol) polarization free energy of solvation -72.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds