Wall clock time and date at job start Tue Mar 31 2020 18:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37103 * 120.00471 * 2 1 4 4 H 1.07999 * 120.00054 * 143.29511 * 3 2 1 5 5 C 1.38951 * 119.99592 * 323.30079 * 3 2 1 6 6 N 1.31415 * 119.99466 * 154.73333 * 5 3 2 7 7 Si 1.86796 * 120.00103 * 334.72629 * 5 3 2 8 8 H 1.48501 * 109.47086 * 95.34735 * 7 5 3 9 9 H 1.48504 * 109.47075 * 215.34731 * 7 5 3 10 10 H 1.48501 * 109.47268 * 335.34633 * 7 5 3 11 11 C 1.34778 * 120.00066 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00209 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99758 * 0.02562 * 11 2 1 14 14 C 1.50696 * 109.46916 * 180.02562 * 13 11 2 15 15 C 1.38267 * 119.54446 * 125.00094 * 14 13 11 16 16 C 1.38507 * 119.23536 * 180.02562 * 15 14 13 17 17 C 1.39265 * 118.36496 * 0.24839 * 16 15 14 18 18 N 1.39981 * 120.49101 * 179.72816 * 17 16 15 19 19 C 1.34783 * 119.99593 * 31.84106 * 18 17 16 20 20 O 1.21514 * 119.99924 * 5.28576 * 19 18 17 21 21 O 1.34653 * 119.99734 * 185.28352 * 19 18 17 22 22 C 1.45205 * 116.99483 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47300 * 60.00031 * 22 21 19 24 24 C 1.53000 * 109.46366 * 179.97438 * 22 21 19 25 25 C 1.52997 * 109.47027 * 299.99321 * 22 21 19 26 26 C 1.38838 * 119.02322 * 359.50695 * 17 16 15 27 27 N 1.31824 * 120.66576 * 0.50713 * 26 17 16 28 28 H 1.08993 * 109.46824 * 266.72552 * 1 2 3 29 29 H 1.08998 * 109.46377 * 26.72435 * 1 2 3 30 30 H 1.08998 * 109.46913 * 146.72209 * 1 2 3 31 31 H 0.97002 * 119.99428 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46776 * 60.00039 * 13 11 2 33 33 H 1.08996 * 109.46663 * 299.99989 * 13 11 2 34 34 H 1.08000 * 120.38113 * 0.03890 * 15 14 13 35 35 H 1.08001 * 120.81705 * 179.97438 * 16 15 14 36 36 H 0.96994 * 120.00197 * 211.84005 * 18 17 16 37 37 H 1.08999 * 109.47105 * 59.99604 * 23 22 21 38 38 H 1.08999 * 109.46905 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47371 * 299.99372 * 23 22 21 40 40 H 1.08998 * 109.47507 * 60.00400 * 24 22 21 41 41 H 1.09007 * 109.47093 * 179.97438 * 24 22 21 42 42 H 1.08999 * 109.47457 * 299.99175 * 24 22 21 43 43 H 1.09007 * 109.46640 * 60.00708 * 25 22 21 44 44 H 1.09002 * 109.46961 * 179.97438 * 25 22 21 45 45 H 1.08999 * 109.47514 * 300.00652 * 25 22 21 46 46 H 1.08003 * 119.67070 * 180.22618 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0700 1.2799 0.5590 5 6 1.6624 2.2714 -0.7192 6 7 1.9833 3.4947 -0.3622 7 14 0.5504 1.9898 -2.1934 8 1 -0.8691 2.0937 -1.7697 9 1 0.8339 3.0145 -3.2302 10 1 0.8024 0.6372 -2.7524 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0018 15 6 2.2825 -4.5839 0.9875 16 6 3.1861 -5.6336 0.9829 17 6 4.1520 -5.6707 -0.0198 18 7 5.0908 -6.7081 -0.0635 19 6 4.7555 -7.9391 0.3711 20 8 3.6125 -8.1731 0.7106 21 8 5.6872 -8.9095 0.4289 22 6 5.2547 -10.2108 0.9063 23 6 4.1551 -10.7507 -0.0103 24 6 6.4418 -11.1761 0.9012 25 6 4.7117 -10.0770 2.3304 26 6 4.1672 -4.6661 -0.9780 27 7 3.2883 -3.6844 -0.9369 28 1 -0.3633 -0.0587 1.0259 29 1 -0.3632 0.9179 -0.4622 30 1 -0.3633 -0.8591 -0.5639 31 1 1.6428 4.2515 -0.8645 32 1 0.7591 -2.5302 -0.8897 33 1 0.7584 -2.5298 0.8903 34 1 1.5223 -4.5209 1.7521 35 1 3.1455 -6.4019 1.7407 36 1 5.9825 -6.5410 -0.4066 37 1 4.5420 -10.8460 -1.0248 38 1 3.8301 -11.7273 0.3484 39 1 3.3093 -10.0631 -0.0071 40 1 7.2255 -10.7917 1.5539 41 1 6.1173 -12.1529 1.2600 42 1 6.8282 -11.2715 -0.1135 43 1 3.8659 -9.3893 2.3335 44 1 4.3866 -11.0538 2.6886 45 1 5.4951 -9.6923 2.9833 46 1 4.9093 -4.6866 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492255738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:10 Heat of formation + Delta-G solvation = -55.919574 kcal Electronic energy + Delta-G solvation = -28527.432185 eV Core-core repulsion = 24418.553596 eV Total energy + Delta-G solvation = -4108.878589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42393 -40.17767 -38.54144 -37.65076 -35.42000 -34.67953 -34.31557 -32.28610 -31.95934 -31.38488 -27.86855 -27.81633 -27.76244 -26.30766 -24.76164 -23.65846 -23.36232 -21.62753 -20.42333 -18.96546 -18.56923 -17.69073 -16.97996 -16.73067 -16.52670 -16.38961 -15.82259 -15.58872 -15.39207 -14.95832 -14.71407 -14.32381 -14.01817 -13.85050 -13.70203 -13.26176 -12.97033 -12.88067 -12.71822 -12.57024 -12.47496 -12.32578 -12.28892 -12.15233 -12.07325 -11.82799 -11.65777 -11.62861 -11.42169 -10.87078 -10.71715 -10.66618 -10.42454 -10.34411 -9.87933 -9.55942 -9.20722 -8.98419 -8.44301 -8.16280 -7.65487 -6.35137 -3.87371 1.08927 1.44893 1.75291 2.50594 3.08227 3.27856 3.35176 3.69091 3.83573 3.93124 4.21673 4.29426 4.34961 4.48816 4.50913 4.59555 4.85282 4.89496 4.99767 5.06794 5.12816 5.14239 5.19490 5.29042 5.30233 5.40066 5.45916 5.58157 5.63885 5.70287 5.76593 5.79503 5.85929 5.90120 5.95574 6.01076 6.08597 6.21189 6.24001 6.30678 6.36215 6.79961 7.00991 7.60849 7.97126 8.25484 8.35570 8.59433 9.05786 9.39615 9.87351 10.77313 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.002060 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.029038 B =13592.160321 C =13714.972008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.475 5.475 3 C -0.314 4.314 4 H 0.104 0.896 5 C 0.059 3.941 6 N -0.863 5.863 7 Si 0.874 3.126 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.263 1.263 11 C 0.472 3.528 12 O -0.548 6.548 13 C -0.093 4.093 14 C 0.148 3.852 15 C -0.150 4.150 16 C -0.077 4.077 17 C 0.091 3.909 18 N -0.644 5.644 19 C 0.652 3.348 20 O -0.551 6.551 21 O -0.361 6.361 22 C 0.136 3.864 23 C -0.185 4.185 24 C -0.141 4.141 25 C -0.185 4.185 26 C 0.091 3.909 27 N -0.428 5.428 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.273 0.727 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.418 0.582 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -28.587 2.310 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.198 5.198 3 C -0.441 4.441 4 H 0.121 0.879 5 C -0.147 4.147 6 N -0.499 5.499 7 Si 0.701 3.299 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.187 1.187 11 C 0.259 3.741 12 O -0.428 6.428 13 C -0.134 4.134 14 C 0.009 3.991 15 C -0.170 4.170 16 C -0.105 4.105 17 C -0.004 4.004 18 N -0.296 5.296 19 C 0.406 3.594 20 O -0.439 6.439 21 O -0.276 6.276 22 C 0.100 3.900 23 C -0.242 4.242 24 C -0.198 4.198 25 C -0.242 4.242 26 C -0.070 4.070 27 N -0.135 5.135 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.693 -27.961 1.859 28.152 hybrid contribution -0.285 -0.580 -0.330 0.726 sum 2.408 -28.541 1.529 28.683 Atomic orbital electron populations 1.21990 0.83434 1.01584 1.00957 1.43665 1.03960 1.05571 1.66635 1.18990 1.09886 0.85175 1.30025 0.87886 1.25349 0.97318 0.94728 0.97270 1.69811 1.44272 0.98041 1.37801 0.87018 0.79800 0.79140 0.83930 1.20352 1.21474 1.18723 1.19884 0.88192 0.84087 0.81942 1.90579 1.13613 1.86609 1.51963 1.20682 0.96762 0.91791 1.04117 1.20754 0.93445 0.94014 0.90877 1.21860 1.00553 0.94631 0.99980 1.21470 0.94259 0.98091 0.96704 1.18564 0.93961 0.90311 0.97572 1.41907 1.16413 1.05876 1.65379 1.18038 0.83125 0.81121 0.77129 1.90919 1.19318 1.81307 1.52356 1.86315 1.40190 1.21038 1.80034 1.22141 0.95519 0.78060 0.94325 1.22528 0.99797 1.02658 0.99200 1.21872 0.96831 0.97656 1.03461 1.22531 1.03156 1.04028 0.94480 1.22563 0.98281 0.90111 0.96028 1.67541 1.01877 1.19943 1.24174 0.93069 0.91624 0.92778 0.91719 0.88156 0.88510 0.84428 0.83802 0.74548 0.92069 0.90972 0.89301 0.91359 0.89988 0.91375 0.89338 0.90945 0.92013 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 8.92 59.85 0.53 1.78 16 2 N -0.48 -11.68 2.58 -122.19 -0.31 -11.99 16 3 C -0.31 -9.07 9.34 -14.93 -0.14 -9.21 16 4 H 0.10 3.35 7.89 -52.49 -0.41 2.94 16 5 C 0.06 1.66 5.23 -17.47 -0.09 1.57 16 6 N -0.86 -25.30 13.96 55.50 0.77 -24.52 16 7 Si 0.87 20.87 25.23 -169.99 -4.29 16.58 16 8 H -0.28 -6.07 6.64 56.52 0.38 -5.70 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 11 C 0.47 11.15 7.56 -10.98 -0.08 11.07 16 12 O -0.55 -15.18 15.19 5.55 0.08 -15.09 16 13 C -0.09 -1.60 4.70 -29.03 -0.14 -1.74 16 14 C 0.15 2.55 5.77 -82.57 -0.48 2.08 16 15 C -0.15 -2.14 9.70 -39.47 -0.38 -2.52 16 16 C -0.08 -1.06 8.77 -39.10 -0.34 -1.41 16 17 C 0.09 1.21 6.33 -83.53 -0.53 0.68 16 18 N -0.64 -6.80 5.36 -14.17 -0.08 -6.87 16 19 C 0.65 7.37 7.83 54.06 0.42 7.80 16 20 O -0.55 -7.18 9.52 -19.28 -0.18 -7.37 16 21 O -0.36 -3.53 9.94 -40.36 -0.40 -3.93 16 22 C 0.14 1.07 1.13 -90.62 -0.10 0.97 16 23 C -0.18 -1.44 8.37 37.15 0.31 -1.13 16 24 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 25 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 26 C 0.09 1.35 11.12 -17.33 -0.19 1.15 16 27 N -0.43 -7.93 9.21 -9.31 -0.09 -8.01 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.37 3.55 -51.93 -0.18 1.19 16 30 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.10 1.57 7.41 -51.93 -0.38 1.19 16 33 H 0.10 1.33 7.83 -51.93 -0.41 0.93 16 34 H 0.14 1.56 7.94 -52.49 -0.42 1.15 16 35 H 0.14 1.87 6.41 -52.49 -0.34 1.53 16 36 H 0.42 3.24 8.93 -40.82 -0.36 2.87 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -36.12 373.63 -5.85 -41.97 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.43 Total: 4.07 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -0.57 Total: 9.54 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.30 Total: -51.40 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.50 Total: -26.38 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.29 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.12 -5.85 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492255738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.948 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds