Wall clock time and date at job start Tue Mar 31 2020 18:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37103 * 120.00471 * 2 1 4 4 H 1.07999 * 120.00054 * 143.29511 * 3 2 1 5 5 C 1.38951 * 119.99592 * 323.30079 * 3 2 1 6 6 N 1.31415 * 119.99466 * 154.73333 * 5 3 2 7 7 Si 1.86796 * 120.00103 * 334.72629 * 5 3 2 8 8 H 1.48501 * 109.47086 * 95.34735 * 7 5 3 9 9 H 1.48504 * 109.47075 * 215.34731 * 7 5 3 10 10 H 1.48501 * 109.47268 * 335.34633 * 7 5 3 11 11 C 1.34778 * 120.00066 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00209 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99758 * 0.02562 * 11 2 1 14 14 C 1.50696 * 109.46916 * 180.02562 * 13 11 2 15 15 C 1.38267 * 119.54446 * 125.00094 * 14 13 11 16 16 C 1.38507 * 119.23536 * 180.02562 * 15 14 13 17 17 C 1.39265 * 118.36496 * 0.24839 * 16 15 14 18 18 N 1.39981 * 120.49101 * 179.72816 * 17 16 15 19 19 C 1.34783 * 119.99593 * 31.84106 * 18 17 16 20 20 O 1.21514 * 119.99924 * 5.28576 * 19 18 17 21 21 O 1.34653 * 119.99734 * 185.28352 * 19 18 17 22 22 C 1.45205 * 116.99483 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47300 * 60.00031 * 22 21 19 24 24 C 1.53000 * 109.46366 * 179.97438 * 22 21 19 25 25 C 1.52997 * 109.47027 * 299.99321 * 22 21 19 26 26 C 1.38838 * 119.02322 * 359.50695 * 17 16 15 27 27 N 1.31824 * 120.66576 * 0.50713 * 26 17 16 28 28 H 1.08993 * 109.46824 * 266.72552 * 1 2 3 29 29 H 1.08998 * 109.46377 * 26.72435 * 1 2 3 30 30 H 1.08998 * 109.46913 * 146.72209 * 1 2 3 31 31 H 0.97002 * 119.99428 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46776 * 60.00039 * 13 11 2 33 33 H 1.08996 * 109.46663 * 299.99989 * 13 11 2 34 34 H 1.08000 * 120.38113 * 0.03890 * 15 14 13 35 35 H 1.08001 * 120.81705 * 179.97438 * 16 15 14 36 36 H 0.96994 * 120.00197 * 211.84005 * 18 17 16 37 37 H 1.08999 * 109.47105 * 59.99604 * 23 22 21 38 38 H 1.08999 * 109.46905 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47371 * 299.99372 * 23 22 21 40 40 H 1.08998 * 109.47507 * 60.00400 * 24 22 21 41 41 H 1.09007 * 109.47093 * 179.97438 * 24 22 21 42 42 H 1.08999 * 109.47457 * 299.99175 * 24 22 21 43 43 H 1.09007 * 109.46640 * 60.00708 * 25 22 21 44 44 H 1.09002 * 109.46961 * 179.97438 * 25 22 21 45 45 H 1.08999 * 109.47514 * 300.00652 * 25 22 21 46 46 H 1.08003 * 119.67070 * 180.22618 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0700 1.2799 0.5590 5 6 1.6624 2.2714 -0.7192 6 7 1.9833 3.4947 -0.3622 7 14 0.5504 1.9898 -2.1934 8 1 -0.8691 2.0937 -1.7697 9 1 0.8339 3.0145 -3.2302 10 1 0.8024 0.6372 -2.7524 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0018 15 6 2.2825 -4.5839 0.9875 16 6 3.1861 -5.6336 0.9829 17 6 4.1520 -5.6707 -0.0198 18 7 5.0908 -6.7081 -0.0635 19 6 4.7555 -7.9391 0.3711 20 8 3.6125 -8.1731 0.7106 21 8 5.6872 -8.9095 0.4289 22 6 5.2547 -10.2108 0.9063 23 6 4.1551 -10.7507 -0.0103 24 6 6.4418 -11.1761 0.9012 25 6 4.7117 -10.0770 2.3304 26 6 4.1672 -4.6661 -0.9780 27 7 3.2883 -3.6844 -0.9369 28 1 -0.3633 -0.0587 1.0259 29 1 -0.3632 0.9179 -0.4622 30 1 -0.3633 -0.8591 -0.5639 31 1 1.6428 4.2515 -0.8645 32 1 0.7591 -2.5302 -0.8897 33 1 0.7584 -2.5298 0.8903 34 1 1.5223 -4.5209 1.7521 35 1 3.1455 -6.4019 1.7407 36 1 5.9825 -6.5410 -0.4066 37 1 4.5420 -10.8460 -1.0248 38 1 3.8301 -11.7273 0.3484 39 1 3.3093 -10.0631 -0.0071 40 1 7.2255 -10.7917 1.5539 41 1 6.1173 -12.1529 1.2600 42 1 6.8282 -11.2715 -0.1135 43 1 3.8659 -9.3893 2.3335 44 1 4.3866 -11.0538 2.6886 45 1 5.4951 -9.6923 2.9833 46 1 4.9093 -4.6866 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492255738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:09 Heat of formation + Delta-G solvation = -82.610032 kcal Electronic energy + Delta-G solvation = -28528.589570 eV Core-core repulsion = 24418.553596 eV Total energy + Delta-G solvation = -4110.035974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31726 -41.28873 -40.19037 -38.57581 -36.67966 -36.27435 -35.04401 -34.15160 -33.30941 -32.63035 -29.22997 -28.36126 -28.29721 -27.95411 -26.50854 -24.77229 -24.47357 -22.68250 -21.25733 -20.61670 -19.49552 -18.98590 -18.62624 -17.97830 -17.61838 -17.30553 -17.24918 -17.12820 -16.68096 -16.01066 -15.70610 -15.51973 -15.32506 -14.90931 -14.66862 -14.59369 -14.48578 -14.25093 -13.94391 -13.83114 -13.43089 -13.34340 -13.26851 -13.04416 -12.96134 -12.92157 -12.87097 -12.63857 -12.55421 -12.35411 -12.20765 -11.86719 -11.78868 -11.43426 -11.24402 -10.99877 -10.67892 -10.46211 -10.17211 -9.62987 -9.27974 -8.50104 -6.07197 -0.01603 0.34970 0.92909 1.21610 1.35919 1.48945 1.60178 2.05231 2.21059 2.65425 2.92133 2.93263 3.05314 3.42299 3.71384 3.76425 3.78799 3.83614 3.93517 4.00275 4.09730 4.26108 4.40706 4.52995 4.55139 4.57395 4.62787 4.69269 4.72249 4.77474 4.77678 4.85691 4.88521 4.90184 4.97839 5.05522 5.11923 5.18892 5.28699 5.30563 5.47659 5.56647 5.73976 6.07378 6.15946 6.62396 7.01251 7.08882 7.14699 7.37107 7.97507 8.67862 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.002060 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.029038 B =13592.160321 C =13714.972008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.490 5.490 3 C -0.334 4.334 4 H 0.039 0.961 5 C 0.010 3.990 6 N -0.910 5.910 7 Si 0.950 3.050 8 H -0.235 1.235 9 H -0.292 1.292 10 H -0.263 1.263 11 C 0.464 3.536 12 O -0.602 6.602 13 C -0.079 4.079 14 C 0.116 3.884 15 C -0.140 4.140 16 C -0.085 4.085 17 C 0.103 3.897 18 N -0.636 5.636 19 C 0.651 3.349 20 O -0.568 6.568 21 O -0.361 6.361 22 C 0.125 3.875 23 C -0.181 4.181 24 C -0.137 4.137 25 C -0.182 4.182 26 C 0.078 3.922 27 N -0.472 5.472 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.279 0.721 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.431 0.569 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -31.658 1.920 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.213 5.213 3 C -0.462 4.462 4 H 0.057 0.943 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.773 3.227 8 H -0.160 1.160 9 H -0.219 1.219 10 H -0.187 1.187 11 C 0.253 3.747 12 O -0.485 6.485 13 C -0.119 4.119 14 C -0.023 4.023 15 C -0.160 4.160 16 C -0.113 4.113 17 C 0.007 3.993 18 N -0.289 5.289 19 C 0.406 3.594 20 O -0.457 6.457 21 O -0.275 6.275 22 C 0.089 3.911 23 C -0.238 4.238 24 C -0.194 4.194 25 C -0.239 4.239 26 C -0.083 4.083 27 N -0.180 5.180 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.187 0.813 35 H 0.170 0.830 36 H 0.270 0.730 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.691 -31.058 1.483 31.101 hybrid contribution 0.479 0.263 -0.110 0.558 sum 1.171 -30.794 1.373 30.847 Atomic orbital electron populations 1.22261 0.79915 1.02897 1.03466 1.43832 1.06130 1.04399 1.66918 1.18585 1.09025 0.87882 1.30677 0.94255 1.26152 0.99545 0.93845 0.99654 1.69919 1.46445 0.99183 1.39192 0.85825 0.79642 0.78536 0.78653 1.15974 1.21861 1.18707 1.21014 0.88047 0.85880 0.79749 1.90542 1.16441 1.87750 1.53812 1.20669 0.96589 0.87580 1.07071 1.20898 0.94139 0.95104 0.92120 1.22111 1.00886 0.93547 0.99444 1.21666 0.94408 0.98267 0.96979 1.18551 0.93813 0.90207 0.96703 1.41818 1.16605 1.05348 1.65162 1.18120 0.83125 0.81378 0.76807 1.90917 1.20137 1.81663 1.52978 1.86341 1.39761 1.21527 1.79897 1.22508 0.96814 0.77523 0.94260 1.22487 0.98800 1.03019 0.99506 1.21903 0.95769 0.97813 1.03879 1.22499 1.02234 1.04589 0.94579 1.22843 0.98388 0.89979 0.97076 1.67444 1.03232 1.21602 1.25738 0.90427 0.92850 0.88300 0.91135 0.85996 0.84349 0.81315 0.83038 0.73019 0.91904 0.88919 0.91897 0.91175 0.87814 0.91099 0.91689 0.88915 0.91922 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.03 8.92 127.77 1.14 3.17 16 2 N -0.49 -23.98 2.58 -658.89 -1.70 -25.68 16 3 C -0.33 -20.15 9.34 84.04 0.79 -19.36 16 4 H 0.04 2.80 7.89 -2.91 -0.02 2.77 16 5 C 0.01 0.57 5.23 84.93 0.44 1.02 16 6 N -0.91 -55.15 13.96 21.66 0.30 -54.84 16 7 Si 0.95 42.78 25.23 68.60 1.73 44.51 16 8 H -0.24 -9.03 6.64 99.48 0.66 -8.37 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 C 0.46 21.94 7.56 87.66 0.66 22.60 16 12 O -0.60 -34.76 15.19 -3.06 -0.05 -34.81 16 13 C -0.08 -2.54 4.70 29.10 0.14 -2.40 16 14 C 0.12 3.85 5.77 42.56 0.25 4.10 16 15 C -0.14 -3.71 9.70 22.34 0.22 -3.49 16 16 C -0.09 -2.23 8.77 22.58 0.20 -2.03 16 17 C 0.10 2.66 6.33 38.23 0.24 2.90 16 18 N -0.64 -12.82 5.36 -429.12 -2.30 -15.12 16 19 C 0.65 14.10 7.83 129.79 1.02 15.11 16 20 O -0.57 -14.36 9.52 19.79 0.19 -14.17 16 21 O -0.36 -6.58 9.94 -55.62 -0.55 -7.13 16 22 C 0.12 1.75 1.13 -10.80 -0.01 1.74 16 23 C -0.18 -2.55 8.37 71.98 0.60 -1.94 16 24 C -0.14 -1.11 8.85 71.98 0.64 -0.48 16 25 C -0.18 -2.53 8.37 71.98 0.60 -1.93 16 26 C 0.08 2.29 11.12 84.84 0.94 3.23 16 27 N -0.47 -17.47 9.21 -183.38 -1.69 -19.16 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 2.04 3.55 -2.39 -0.01 2.03 16 30 H 0.10 2.64 6.57 -2.39 -0.02 2.62 16 31 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.12 3.36 7.41 -2.39 -0.02 3.35 16 33 H 0.14 3.23 7.83 -2.39 -0.02 3.21 16 34 H 0.17 3.25 7.94 -2.91 -0.02 3.22 16 35 H 0.15 3.73 6.41 -2.91 -0.02 3.71 16 36 H 0.43 6.24 8.93 -92.71 -0.83 5.41 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.06 1.24 5.88 -2.38 -0.01 1.23 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -85.31 373.63 3.94 -81.38 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.14 Total: 22.82 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 7.86 Total: 22.22 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -5.39 Total: -114.81 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -0.41 Total: -56.12 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.73 Total: 44.51 kcal Total: -85.31 3.94 -81.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492255738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.234 kcal (2) G-P(sol) polarization free energy of solvation -85.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds