Wall clock time and date at job start Tue Mar 31 2020 18:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47215 * 2 1 4 4 C 1.52997 * 109.47377 * 239.99988 * 2 1 3 5 5 O 1.45203 * 109.47342 * 119.99726 * 2 1 3 6 6 C 1.34636 * 116.99692 * 60.00258 * 5 2 1 7 7 O 1.21517 * 119.99968 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00049 * 179.97438 * 6 5 2 9 9 C 1.47733 * 134.39571 * 179.97438 * 8 6 5 10 10 C 1.53294 * 85.85530 * 155.90629 * 9 8 6 11 11 C 1.52464 * 128.85248 * 243.35296 * 10 9 8 12 12 C 1.52323 * 128.81825 * 163.01180 * 10 9 8 13 13 H 1.08994 * 117.51962 * 225.38580 * 12 10 9 14 14 C 1.50706 * 117.51597 * 10.45907 * 12 10 9 15 15 O 1.21296 * 119.99641 * 359.83768 * 14 12 10 16 16 N 1.34776 * 120.00117 * 179.82609 * 14 12 10 17 17 C 1.37097 * 119.99833 * 180.02562 * 16 14 12 18 18 H 1.07999 * 119.99710 * 141.53285 * 17 16 14 19 19 C 1.38951 * 120.00047 * 321.52779 * 17 16 14 20 20 N 1.31415 * 120.00113 * 157.41725 * 19 17 16 21 21 Si 1.86803 * 120.00126 * 337.41438 * 19 17 16 22 22 H 1.48494 * 109.46988 * 93.83019 * 21 19 17 23 23 H 1.48500 * 109.47266 * 213.83210 * 21 19 17 24 24 H 1.48504 * 109.46806 * 333.83285 * 21 19 17 25 25 C 1.46502 * 119.99755 * 0.02562 * 16 14 12 26 26 C 1.47203 * 109.47032 * 275.39486 * 25 16 14 27 27 N 9.18423 * 150.62629 * 225.23349 * 5 1 2 28 28 C 1.47720 * 134.39406 * 359.97438 * 8 6 5 29 29 H 1.09002 * 109.47224 * 299.99822 * 1 2 3 30 30 H 1.09002 * 109.47405 * 60.00191 * 1 2 3 31 31 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47163 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46778 * 300.00193 * 3 2 1 34 34 H 1.09002 * 109.46879 * 59.99967 * 3 2 1 35 35 H 1.09006 * 109.47102 * 300.00376 * 4 2 1 36 36 H 1.09002 * 109.47000 * 59.99572 * 4 2 1 37 37 H 1.08996 * 109.47555 * 179.97438 * 4 2 1 38 38 H 1.08997 * 113.80592 * 41.67339 * 9 8 6 39 39 H 1.09001 * 113.81090 * 270.14083 * 9 8 6 40 40 H 1.08996 * 117.50826 * 134.69375 * 11 10 9 41 41 H 1.09011 * 117.58060 * 349.53028 * 11 10 9 42 42 H 0.97002 * 119.99816 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46653 * 155.39667 * 25 16 14 44 44 H 1.08998 * 109.46986 * 35.39304 * 25 16 14 45 45 H 1.09004 * 113.81449 * 89.85562 * 28 8 6 46 46 H 1.09002 * 113.81346 * 318.33019 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4166 9 6 1.8711 -4.0496 2.8945 10 6 3.1801 -3.8510 3.6670 11 6 4.5055 -4.5876 3.5084 12 6 3.7352 -4.6632 4.8299 13 1 4.1391 -4.1141 5.6804 14 6 3.0483 -5.9629 5.1620 15 8 2.0890 -6.3247 4.5139 16 7 3.5001 -6.7232 6.1790 17 6 2.8755 -7.9057 6.4808 18 1 3.4594 -8.7644 6.7777 19 6 1.4912 -7.9995 6.4046 20 7 0.9195 -9.1727 6.2508 21 14 0.4428 -6.4578 6.5210 22 1 0.1539 -5.9514 5.1553 23 1 -0.8329 -6.7776 7.2106 24 1 1.1742 -5.4188 7.2898 25 6 4.6586 -6.2860 6.9620 26 6 5.8959 -6.6983 6.2794 27 7 6.8497 -7.0156 5.7553 28 6 2.9028 -2.3452 3.5925 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2494 38 1 1.9346 -4.8003 2.1067 39 1 0.9972 -4.1742 3.5340 40 1 5.4156 -3.9880 3.4895 41 1 4.5160 -5.4781 2.8798 42 1 -0.0468 -9.2381 6.1973 43 1 4.6207 -6.7410 7.9518 44 1 4.6421 -5.2006 7.0600 45 1 2.3380 -1.9592 4.4411 46 1 3.7830 -1.7467 3.3575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492794973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:26 Heat of formation + Delta-G solvation = 8.466064 kcal Electronic energy + Delta-G solvation = -29580.680624 eV Core-core repulsion = 25474.594006 eV Total energy + Delta-G solvation = -4106.086618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93483 -40.04147 -38.66515 -36.70852 -36.28982 -34.73962 -34.33545 -33.92270 -32.17374 -28.06661 -27.80267 -27.60904 -27.54636 -26.31942 -25.54709 -22.72503 -22.04279 -20.16190 -19.39082 -18.53875 -18.01710 -17.76604 -17.12580 -16.69841 -16.36300 -16.19510 -15.45798 -15.12961 -14.89139 -14.48555 -14.23247 -14.15446 -13.93100 -13.64804 -13.35628 -13.13859 -13.08984 -12.71013 -12.68978 -12.48501 -12.41906 -12.36904 -12.11859 -12.07369 -12.00719 -11.66984 -11.61729 -11.45819 -11.21091 -11.02457 -10.77220 -10.72332 -10.47974 -10.25713 -10.13626 -10.05557 -9.79325 -8.82291 -8.69051 -8.62704 -7.97856 -6.32939 -4.10116 1.95693 2.85758 2.96643 3.05403 3.17000 3.35879 3.48097 3.57568 3.67319 3.93500 4.01452 4.41576 4.46684 4.52394 4.53308 4.56806 4.64510 4.71306 4.96460 5.11624 5.15127 5.24381 5.27435 5.32433 5.32843 5.35161 5.47502 5.50092 5.55501 5.55802 5.67025 5.67371 5.72105 5.77965 5.80408 5.84779 5.95481 6.06698 6.12512 6.12954 6.17674 6.45626 7.66766 7.70258 7.70946 7.91288 8.35049 8.54543 8.68282 9.24346 9.53923 10.71487 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003197 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.370561 B = 8754.995709 C = 9851.568161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.674 3.326 7 O -0.569 6.569 8 N -0.632 5.632 9 C 0.189 3.811 10 C -0.155 4.155 11 C -0.112 4.112 12 C -0.155 4.155 13 H 0.123 0.877 14 C 0.472 3.528 15 O -0.525 6.525 16 N -0.452 5.452 17 C -0.363 4.363 18 H 0.097 0.903 19 C 0.097 3.903 20 N -0.854 5.854 21 Si 0.912 3.088 22 H -0.249 1.249 23 H -0.309 1.309 24 H -0.279 1.279 25 C 0.193 3.807 26 C 0.204 3.796 27 N -0.444 5.444 28 C 0.150 3.850 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 20.680 -4.899 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.430 3.570 7 O -0.459 6.459 8 N -0.375 5.375 9 C 0.070 3.930 10 C -0.157 4.157 11 C -0.149 4.149 12 C -0.177 4.177 13 H 0.141 0.859 14 C 0.263 3.737 15 O -0.406 6.406 16 N -0.174 5.174 17 C -0.488 4.488 18 H 0.115 0.885 19 C -0.114 4.114 20 N -0.488 5.488 21 Si 0.743 3.257 22 H -0.175 1.175 23 H -0.239 1.239 24 H -0.204 1.204 25 C 0.065 3.935 26 C -0.115 4.115 27 N -0.123 5.123 28 C 0.027 3.973 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.143 0.857 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.063 19.884 -6.522 21.317 hybrid contribution -0.904 0.743 0.389 1.233 sum 3.160 20.627 -6.133 21.750 Atomic orbital electron populations 1.22516 0.94092 1.05172 1.02301 1.22041 0.94350 0.91450 0.82343 1.21845 1.02177 0.92616 1.02982 1.22519 1.01511 1.03647 0.96389 1.86298 1.71822 1.23627 1.46154 1.17417 0.78139 0.80007 0.81403 1.90899 1.41382 1.70427 1.43146 1.48704 1.53614 1.14970 1.20169 1.22575 0.95799 0.79573 0.95099 1.22434 0.96881 0.94125 1.02227 1.22804 0.93009 1.01639 0.97494 1.22336 1.04080 0.97784 0.93518 0.85930 1.19364 0.86856 0.85930 0.81591 1.90572 1.27203 1.72098 1.50701 1.43466 1.26069 1.21206 1.26654 1.18823 0.90547 0.87032 1.52401 0.88505 1.25260 0.97079 0.97343 0.91713 1.69770 1.11611 1.25212 1.42183 0.86422 0.78250 0.82645 0.78399 1.17474 1.23852 1.20445 1.19158 0.78788 1.00464 0.95075 1.30090 0.94676 0.92972 0.93790 1.80977 1.13074 1.09227 1.08993 1.22680 0.93777 0.93902 0.86939 0.92242 0.91238 0.89314 0.91534 0.90242 0.91540 0.89294 0.91273 0.92223 0.89249 0.88235 0.87723 0.87671 0.91503 0.85725 0.87755 0.88949 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.15 0.31 -1.67 16 2 C 0.13 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.36 -4.93 9.87 -40.31 -0.40 -5.33 16 6 C 0.67 10.69 8.22 54.05 0.44 11.14 16 7 O -0.57 -10.31 12.61 -19.29 -0.24 -10.55 16 8 N -0.63 -9.44 3.61 -187.54 -0.68 -10.12 16 9 C 0.19 3.11 7.27 -3.22 -0.02 3.08 16 10 C -0.16 -2.16 3.04 -154.95 -0.47 -2.63 16 11 C -0.11 -1.50 10.24 -26.93 -0.28 -1.77 16 12 C -0.15 -2.26 5.19 -92.04 -0.48 -2.74 16 13 H 0.12 1.34 6.52 -51.93 -0.34 1.01 16 14 C 0.47 9.57 5.67 -10.98 -0.06 9.51 16 15 O -0.52 -12.67 10.16 5.54 0.06 -12.61 16 16 N -0.45 -9.23 2.20 -117.93 -0.26 -9.49 16 17 C -0.36 -9.17 9.72 -14.93 -0.15 -9.31 16 18 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 19 C 0.10 2.62 4.77 -17.47 -0.08 2.53 16 20 N -0.85 -24.60 13.96 55.50 0.77 -23.82 16 21 Si 0.91 21.86 24.83 -169.99 -4.22 17.64 16 22 H -0.25 -6.19 6.11 56.52 0.35 -5.84 16 23 H -0.31 -7.49 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.19 2.76 5.65 -6.83 -0.04 2.72 16 26 C 0.20 3.26 15.57 -20.84 -0.32 2.94 16 27 N -0.44 -7.99 18.52 42.06 0.78 -7.21 16 28 C 0.15 1.73 8.89 -3.23 -0.03 1.70 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.10 1.77 8.01 -51.93 -0.42 1.35 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 42 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 1.55 8.00 -51.93 -0.42 1.14 16 44 H 0.10 1.05 6.24 -51.93 -0.32 0.73 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -33.87 381.65 -5.87 -39.74 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.79 Total: 1.55 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -0.64 Total: 14.46 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.62 Total: -50.64 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.58 Total: -28.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.22 Total: 17.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.87 -5.87 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492794973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.204 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds