Wall clock time and date at job start Tue Mar 31 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99843 * 2 1 4 4 O 1.21515 * 119.99741 * 0.02562 * 3 2 1 5 5 O 1.34677 * 119.99932 * 179.97438 * 3 2 1 6 6 C 1.35934 * 117.00226 * 185.02227 * 5 3 2 7 7 C 1.38795 * 120.02309 * 244.85039 * 6 5 3 8 8 C 1.38162 * 120.08751 * 179.76371 * 7 6 5 9 9 C 1.38174 * 120.12158 * 0.51571 * 8 7 6 10 10 C 1.38882 * 120.03885 * 359.73738 * 9 8 7 11 11 N 1.39934 * 120.04556 * 180.02562 * 10 9 8 12 12 C 1.34776 * 120.00127 * 215.00297 * 11 10 9 13 13 O 1.21585 * 120.00274 * 355.09319 * 12 11 10 14 14 N 1.34778 * 119.99900 * 175.09534 * 12 11 10 15 15 C 1.46506 * 119.99946 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47087 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47243 * 300.00114 * 16 15 14 18 18 C 1.53006 * 109.46868 * 60.00060 * 16 15 14 19 19 C 1.50699 * 109.46982 * 179.97438 * 16 15 14 20 20 H 1.08002 * 120.00155 * 5.53360 * 19 16 15 21 21 C 1.37878 * 119.99761 * 185.52313 * 19 16 15 22 22 N 1.31516 * 119.99781 * 185.63465 * 21 19 16 23 23 Si 1.86796 * 120.00357 * 5.64026 * 21 19 16 24 24 H 1.48501 * 109.47159 * 95.14532 * 23 21 19 25 25 H 1.48498 * 109.47324 * 215.15051 * 23 21 19 26 26 H 1.48506 * 109.47050 * 335.14926 * 23 21 19 27 27 C 1.38574 * 120.01398 * 65.12325 * 6 5 3 28 28 H 1.09003 * 109.47122 * 60.00423 * 1 2 3 29 29 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47544 * 299.99647 * 1 2 3 31 31 H 0.97001 * 119.99913 * 179.97438 * 2 1 3 32 32 H 1.08003 * 119.95448 * 0.02562 * 7 6 5 33 33 H 1.08000 * 119.94279 * 180.25370 * 8 7 6 34 34 H 1.08001 * 119.98204 * 179.76706 * 9 8 7 35 35 H 0.96998 * 120.00117 * 35.00485 * 11 10 9 36 36 H 0.96998 * 120.00351 * 359.97438 * 14 12 11 37 37 H 1.09001 * 109.46998 * 300.00192 * 15 14 12 38 38 H 1.09003 * 109.46766 * 59.99865 * 15 14 12 39 39 H 1.08999 * 109.47256 * 65.35438 * 17 16 15 40 40 H 1.09005 * 109.47021 * 185.35218 * 17 16 15 41 41 H 1.08996 * 109.47459 * 305.35142 * 17 16 15 42 42 H 1.09003 * 109.46722 * 60.00150 * 18 16 15 43 43 H 1.09002 * 109.46856 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.46950 * 299.99871 * 18 16 15 45 45 H 0.96999 * 119.99943 * 180.02562 * 22 21 19 46 46 H 1.07995 * 120.06565 * 359.95594 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2195 0.0005 5 8 3.4857 1.1673 0.0005 6 6 4.1028 2.3738 0.1065 7 6 4.8735 2.8542 -0.9430 8 6 5.4974 4.0825 -0.8387 9 6 5.3648 4.8318 0.3147 10 6 4.5991 4.3537 1.3702 11 7 4.4643 5.1126 2.5381 12 6 4.3847 4.4987 3.7353 13 8 4.3401 3.2851 3.7944 14 7 4.3546 5.2301 4.8669 15 6 4.2675 4.5628 6.1683 16 6 4.2500 5.6137 7.2801 17 6 5.5337 6.4438 7.2175 18 6 3.0397 6.5313 7.0955 19 6 4.1598 4.9272 8.6187 20 1 4.2091 3.8500 8.6776 21 6 4.0146 5.6746 9.7682 22 7 4.0471 5.0858 10.9438 23 14 3.7715 7.5233 9.6560 24 1 2.3202 7.8351 9.6973 25 1 4.4522 8.1824 10.7994 26 1 4.3489 8.0220 8.3819 27 6 3.9673 3.1223 1.2648 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.9823 2.2689 -1.8442 33 1 6.0932 4.4559 -1.6584 34 1 5.8565 5.7900 0.3953 35 1 4.4281 6.0805 2.4861 36 1 4.3905 6.1983 4.8198 37 1 3.3532 3.9710 6.2127 38 1 5.1299 3.9093 6.2999 39 1 5.5524 7.0145 6.2891 40 1 5.5656 7.1281 8.0654 41 1 6.3977 5.7802 7.2536 42 1 2.1252 5.9399 7.1402 43 1 3.0270 7.2797 7.8879 44 1 3.1045 7.0278 6.1273 45 1 3.9446 5.6115 11.7525 46 1 3.3710 2.7484 2.0839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495926512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:45 Heat of formation + Delta-G solvation = -43.823678 kcal Electronic energy + Delta-G solvation = -28742.552695 eV Core-core repulsion = 24634.198624 eV Total energy + Delta-G solvation = -4108.354071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45325 -40.38384 -38.77102 -37.37695 -36.72364 -35.03367 -34.49225 -33.42659 -31.55586 -30.52337 -29.53919 -27.36493 -26.44509 -25.97994 -24.89376 -23.64126 -22.80435 -21.35302 -20.78009 -19.61509 -19.29255 -18.30306 -17.99165 -16.80175 -16.49842 -16.31801 -16.10946 -15.49470 -15.42398 -15.32366 -14.82278 -14.57654 -14.31015 -14.03426 -13.74580 -13.59330 -13.29920 -13.00865 -12.75966 -12.64720 -12.60209 -12.33885 -12.22809 -12.08320 -11.90702 -11.46534 -11.25392 -10.94161 -10.46698 -10.38654 -10.30476 -10.22103 -10.08945 -9.84156 -9.64218 -9.08667 -8.88283 -8.70977 -8.62758 -8.53878 -8.13673 -6.14755 -4.15458 0.87879 1.23068 2.04781 2.52313 2.73780 3.21974 3.25125 3.27108 3.36287 3.65596 4.03298 4.33086 4.37722 4.74347 4.78318 4.95985 4.98430 5.11920 5.16535 5.22272 5.34623 5.41972 5.54507 5.69744 5.86332 5.99326 6.02713 6.03436 6.14141 6.17508 6.30214 6.32043 6.40255 6.46936 6.49320 6.56646 6.66238 6.73430 6.90676 6.92358 7.01013 7.04763 7.17226 7.39577 7.68153 8.08656 8.10731 8.43508 8.70732 8.88562 9.46894 10.98416 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002541 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.651966 B =11016.967833 C =12151.188632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.711 5.711 3 C 0.642 3.358 4 O -0.551 6.551 5 O -0.301 6.301 6 C 0.118 3.882 7 C -0.139 4.139 8 C -0.086 4.086 9 C -0.150 4.150 10 C 0.190 3.810 11 N -0.691 5.691 12 C 0.698 3.302 13 O -0.576 6.576 14 N -0.730 5.730 15 C 0.159 3.841 16 C 0.028 3.972 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.510 4.510 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.882 3.118 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.240 1.240 27 C -0.120 4.120 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.410 0.590 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.407 0.593 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -3.383 -26.059 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.370 5.370 3 C 0.395 3.605 4 O -0.437 6.437 5 O -0.213 6.213 6 C 0.076 3.924 7 C -0.159 4.159 8 C -0.105 4.105 9 C -0.171 4.171 10 C 0.094 3.906 11 N -0.339 5.339 12 C 0.398 3.602 13 O -0.453 6.453 14 N -0.384 5.384 15 C 0.036 3.964 16 C 0.027 3.973 17 C -0.202 4.202 18 C -0.204 4.204 19 C -0.548 4.548 20 H 0.096 0.904 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.715 3.285 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.166 1.166 27 C -0.141 4.141 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.243 0.757 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.519 -3.903 -25.659 25.999 hybrid contribution -0.041 1.539 0.238 1.557 sum -1.560 -2.365 -25.421 25.579 Atomic orbital electron populations 1.21616 0.76208 1.02989 1.03018 1.44387 1.07629 1.06352 1.78639 1.18405 0.80604 0.84916 0.76567 1.91055 1.67977 1.30518 1.54123 1.84267 1.19580 1.31919 1.85551 1.18068 0.96055 0.84504 0.93807 1.20917 1.01003 0.96428 0.97551 1.20694 0.99116 0.93266 0.97431 1.20972 0.99949 1.01998 0.94164 1.17216 0.95270 0.92097 0.86049 1.42666 1.77430 1.09790 1.03981 1.16029 0.78186 0.85786 0.80206 1.90911 1.56874 1.11734 1.85819 1.45538 1.77532 1.09785 1.05569 1.21465 1.01584 0.95291 0.78065 1.18741 0.91596 0.92273 0.94694 1.22358 0.99312 0.99522 0.99032 1.22369 1.00396 0.99412 0.98226 1.20742 1.51123 0.95155 0.87775 0.90447 1.24998 0.94321 0.98440 0.95151 1.69904 1.49582 1.36217 0.97587 0.87366 0.77857 0.86528 0.76778 1.21566 1.23258 1.16582 1.21480 1.00216 0.94833 0.97616 0.91763 0.89579 0.91560 0.75534 0.85187 0.84727 0.85146 0.75729 0.77103 0.91881 0.91831 0.95981 0.92398 0.93268 0.92712 0.93933 0.95205 0.92561 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.70 59.85 0.64 1.33 16 2 N -0.71 -6.26 5.72 -72.11 -0.41 -6.67 16 3 C 0.64 8.54 8.50 54.06 0.46 9.00 16 4 O -0.55 -9.13 15.63 -19.28 -0.30 -9.43 16 5 O -0.30 -4.05 10.10 -24.73 -0.25 -4.30 16 6 C 0.12 1.67 5.40 -39.25 -0.21 1.46 16 7 C -0.14 -1.54 9.98 -39.40 -0.39 -1.93 16 8 C -0.09 -0.81 10.03 -39.63 -0.40 -1.21 16 9 C -0.15 -1.56 9.96 -39.37 -0.39 -1.95 16 10 C 0.19 2.59 6.30 -83.71 -0.53 2.06 16 11 N -0.69 -9.01 5.34 -14.24 -0.08 -9.09 16 12 C 0.70 11.79 8.41 -86.92 -0.73 11.05 16 13 O -0.58 -11.96 13.76 5.29 0.07 -11.89 16 14 N -0.73 -11.85 5.00 -65.22 -0.33 -12.17 16 15 C 0.16 3.16 4.51 -4.04 -0.02 3.14 16 16 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 17 C -0.14 -2.87 7.60 37.16 0.28 -2.59 16 18 C -0.15 -2.94 7.48 37.16 0.28 -2.66 16 19 C -0.51 -13.60 8.62 -34.44 -0.30 -13.90 16 20 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 2.02 5.42 -17.82 -0.10 1.93 16 22 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 23 Si 0.88 20.76 22.87 -169.99 -3.89 16.88 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.24 -5.04 4.24 56.52 0.24 -4.80 16 27 C -0.12 -1.91 7.73 -39.25 -0.30 -2.21 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 2.42 8.94 -40.82 -0.36 2.06 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.41 3.81 8.84 -40.82 -0.36 3.45 16 36 H 0.39 5.38 6.22 -40.82 -0.25 5.12 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.02 0.35 7.02 -51.93 -0.36 -0.01 16 40 H 0.06 1.21 4.11 -51.93 -0.21 1.00 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.90 2.20 -51.93 -0.11 0.78 16 44 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.15 2.79 6.21 -52.49 -0.33 2.46 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -35.67 369.85 -6.92 -42.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.30 Total: 10.51 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.79 Total: 4.04 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.04 Total: -53.97 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.48 Total: -25.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -3.89 Total: 16.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.67 -6.92 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495926512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.240 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds