Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99843 * 2 1 4 4 O 1.21515 * 119.99741 * 0.02562 * 3 2 1 5 5 O 1.34677 * 119.99932 * 179.97438 * 3 2 1 6 6 C 1.35934 * 117.00226 * 185.02227 * 5 3 2 7 7 C 1.38795 * 120.02309 * 244.85039 * 6 5 3 8 8 C 1.38162 * 120.08751 * 179.76371 * 7 6 5 9 9 C 1.38174 * 120.12158 * 0.51571 * 8 7 6 10 10 C 1.38882 * 120.03885 * 359.73738 * 9 8 7 11 11 N 1.39934 * 120.04556 * 180.02562 * 10 9 8 12 12 C 1.34776 * 120.00127 * 215.00297 * 11 10 9 13 13 O 1.21585 * 120.00274 * 355.09319 * 12 11 10 14 14 N 1.34778 * 119.99900 * 175.09534 * 12 11 10 15 15 C 1.46506 * 119.99946 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47087 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47243 * 300.00114 * 16 15 14 18 18 C 1.53006 * 109.46868 * 60.00060 * 16 15 14 19 19 C 1.50699 * 109.46982 * 179.97438 * 16 15 14 20 20 H 1.08002 * 120.00155 * 5.53360 * 19 16 15 21 21 C 1.37878 * 119.99761 * 185.52313 * 19 16 15 22 22 N 1.31516 * 119.99781 * 185.63465 * 21 19 16 23 23 Si 1.86796 * 120.00357 * 5.64026 * 21 19 16 24 24 H 1.48501 * 109.47159 * 95.14532 * 23 21 19 25 25 H 1.48498 * 109.47324 * 215.15051 * 23 21 19 26 26 H 1.48506 * 109.47050 * 335.14926 * 23 21 19 27 27 C 1.38574 * 120.01398 * 65.12325 * 6 5 3 28 28 H 1.09003 * 109.47122 * 60.00423 * 1 2 3 29 29 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47544 * 299.99647 * 1 2 3 31 31 H 0.97001 * 119.99913 * 179.97438 * 2 1 3 32 32 H 1.08003 * 119.95448 * 0.02562 * 7 6 5 33 33 H 1.08000 * 119.94279 * 180.25370 * 8 7 6 34 34 H 1.08001 * 119.98204 * 179.76706 * 9 8 7 35 35 H 0.96998 * 120.00117 * 35.00485 * 11 10 9 36 36 H 0.96998 * 120.00351 * 359.97438 * 14 12 11 37 37 H 1.09001 * 109.46998 * 300.00192 * 15 14 12 38 38 H 1.09003 * 109.46766 * 59.99865 * 15 14 12 39 39 H 1.08999 * 109.47256 * 65.35438 * 17 16 15 40 40 H 1.09005 * 109.47021 * 185.35218 * 17 16 15 41 41 H 1.08996 * 109.47459 * 305.35142 * 17 16 15 42 42 H 1.09003 * 109.46722 * 60.00150 * 18 16 15 43 43 H 1.09002 * 109.46856 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.46950 * 299.99871 * 18 16 15 45 45 H 0.96999 * 119.99943 * 180.02562 * 22 21 19 46 46 H 1.07995 * 120.06565 * 359.95594 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2195 0.0005 5 8 3.4857 1.1673 0.0005 6 6 4.1028 2.3738 0.1065 7 6 4.8735 2.8542 -0.9430 8 6 5.4974 4.0825 -0.8387 9 6 5.3648 4.8318 0.3147 10 6 4.5991 4.3537 1.3702 11 7 4.4643 5.1126 2.5381 12 6 4.3847 4.4987 3.7353 13 8 4.3401 3.2851 3.7944 14 7 4.3546 5.2301 4.8669 15 6 4.2675 4.5628 6.1683 16 6 4.2500 5.6137 7.2801 17 6 5.5337 6.4438 7.2175 18 6 3.0397 6.5313 7.0955 19 6 4.1598 4.9272 8.6187 20 1 4.2091 3.8500 8.6776 21 6 4.0146 5.6746 9.7682 22 7 4.0471 5.0858 10.9438 23 14 3.7715 7.5233 9.6560 24 1 2.3202 7.8351 9.6973 25 1 4.4522 8.1824 10.7994 26 1 4.3489 8.0220 8.3819 27 6 3.9673 3.1223 1.2648 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.9823 2.2689 -1.8442 33 1 6.0932 4.4559 -1.6584 34 1 5.8565 5.7900 0.3953 35 1 4.4281 6.0805 2.4861 36 1 4.3905 6.1983 4.8198 37 1 3.3532 3.9710 6.2127 38 1 5.1299 3.9093 6.2999 39 1 5.5524 7.0145 6.2891 40 1 5.5656 7.1281 8.0654 41 1 6.3977 5.7802 7.2536 42 1 2.1252 5.9399 7.1402 43 1 3.0270 7.2797 7.8879 44 1 3.1045 7.0278 6.1273 45 1 3.9446 5.6115 11.7525 46 1 3.3710 2.7484 2.0839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495926512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = -73.062022 kcal Electronic energy + Delta-G solvation = -28743.820565 eV Core-core repulsion = 24634.198624 eV Total energy + Delta-G solvation = -4109.621941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44407 -41.60922 -39.85210 -38.69624 -38.00274 -35.94762 -35.65369 -35.06782 -33.47227 -31.44800 -30.57452 -28.09077 -28.03582 -27.54588 -26.87563 -24.58078 -23.85549 -22.30794 -22.05357 -21.00347 -20.55257 -19.60048 -19.08678 -18.08959 -17.80417 -17.42737 -17.32514 -17.16653 -16.70690 -16.24164 -15.91878 -15.80801 -15.53435 -15.30909 -15.03694 -14.86031 -14.56014 -14.40989 -14.31504 -13.98520 -13.76318 -13.69226 -13.30252 -13.16570 -13.01702 -12.72335 -12.39436 -12.35750 -12.15111 -12.03597 -11.99321 -11.77631 -11.47925 -11.19811 -10.99769 -10.71867 -10.44491 -10.28326 -10.14358 -9.80883 -9.15578 -8.29401 -6.35015 -0.03262 0.28637 1.20190 1.36223 1.37489 1.50067 1.50405 1.54445 1.98696 2.34709 2.72863 3.07739 3.12264 3.27163 3.92066 4.02150 4.07153 4.16387 4.28837 4.30142 4.38392 4.40018 4.50006 4.53440 4.64467 4.71490 4.79806 4.84640 4.86349 4.91508 5.04249 5.06726 5.14272 5.17620 5.24680 5.32454 5.37107 5.42115 5.50428 5.50958 5.70916 5.77547 5.92372 5.97213 6.22628 6.29032 6.70600 6.96882 7.16171 7.31282 7.43099 8.88050 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002541 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.651966 B =11016.967833 C =12151.188632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.694 5.694 3 C 0.632 3.368 4 O -0.592 6.592 5 O -0.304 6.304 6 C 0.091 3.909 7 C -0.136 4.136 8 C -0.074 4.074 9 C -0.134 4.134 10 C 0.165 3.835 11 N -0.670 5.670 12 C 0.696 3.304 13 O -0.621 6.621 14 N -0.716 5.716 15 C 0.176 3.824 16 C 0.029 3.971 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.515 4.515 20 H 0.026 0.974 21 C 0.012 3.988 22 N -0.953 5.953 23 Si 0.940 3.060 24 H -0.287 1.287 25 H -0.314 1.314 26 H -0.186 1.186 27 C -0.153 4.153 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.048 0.952 31 H 0.425 0.575 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.428 0.572 36 H 0.412 0.588 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.264 0.736 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -0.409 -30.125 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.354 5.354 3 C 0.385 3.615 4 O -0.481 6.481 5 O -0.216 6.216 6 C 0.048 3.952 7 C -0.155 4.155 8 C -0.092 4.092 9 C -0.155 4.155 10 C 0.070 3.930 11 N -0.320 5.320 12 C 0.396 3.604 13 O -0.501 6.501 14 N -0.371 5.371 15 C 0.051 3.949 16 C 0.027 3.973 17 C -0.201 4.201 18 C -0.204 4.204 19 C -0.553 4.553 20 H 0.044 0.956 21 C -0.185 4.185 22 N -0.593 5.593 23 Si 0.770 3.230 24 H -0.215 1.215 25 H -0.244 1.244 26 H -0.109 1.109 27 C -0.174 4.174 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.173 0.827 33 H 0.199 0.801 34 H 0.187 0.813 35 H 0.267 0.733 36 H 0.250 0.750 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.384 -0.920 -29.803 29.820 hybrid contribution -0.389 0.401 1.404 1.511 sum -0.773 -0.519 -28.400 28.415 Atomic orbital electron populations 1.21857 0.74761 1.05526 1.02117 1.44515 1.08477 1.05674 1.76739 1.18807 0.80576 0.85610 0.76513 1.91005 1.68590 1.32204 1.56286 1.84259 1.19672 1.32140 1.85525 1.18449 0.97347 0.84892 0.94496 1.21341 0.99635 0.97309 0.97262 1.21287 0.97836 0.91950 0.98104 1.21406 0.98089 1.03184 0.92803 1.17499 0.96682 0.91800 0.87051 1.42336 1.76432 1.10705 1.02529 1.16165 0.77794 0.85208 0.81213 1.90904 1.58579 1.14073 1.86592 1.45086 1.77644 1.10383 1.04033 1.20946 0.99473 0.94707 0.79739 1.18660 0.93876 0.92836 0.91882 1.22273 0.97441 0.99278 1.01064 1.22320 0.98704 0.98833 1.00576 1.21068 1.50004 0.93284 0.90960 0.95583 1.25936 0.94027 1.04147 0.94393 1.70083 1.52015 1.38515 0.98675 0.86446 0.77912 0.79944 0.78739 1.21475 1.24356 1.10945 1.21318 1.01784 0.96857 0.97481 0.91836 0.85284 0.93290 0.73790 0.82677 0.80117 0.81301 0.73276 0.74986 0.94344 0.94043 0.91256 0.93122 0.94011 0.93821 0.94416 0.90514 0.92702 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 10.70 127.77 1.37 2.64 16 2 N -0.69 -12.29 5.72 -612.44 -3.50 -15.80 16 3 C 0.63 17.54 8.50 129.79 1.10 18.64 16 4 O -0.59 -20.66 15.63 19.79 0.31 -20.35 16 5 O -0.30 -8.48 10.10 0.31 0.00 -8.48 16 6 C 0.09 2.58 5.40 22.48 0.12 2.70 16 7 C -0.14 -2.68 9.98 22.39 0.22 -2.46 16 8 C -0.07 -1.05 10.03 22.24 0.22 -0.83 16 9 C -0.13 -2.25 9.96 22.41 0.22 -2.03 16 10 C 0.17 4.29 6.30 38.14 0.24 4.53 16 11 N -0.67 -16.28 5.34 -317.22 -1.69 -17.98 16 12 C 0.70 23.31 8.41 179.05 1.51 24.81 16 13 O -0.62 -27.08 13.76 -3.98 -0.05 -27.14 16 14 N -0.72 -22.09 5.00 -478.52 -2.39 -24.48 16 15 C 0.18 7.12 4.51 86.38 0.39 7.51 16 16 C 0.03 1.20 0.50 -52.93 -0.03 1.18 16 17 C -0.14 -5.22 7.60 71.98 0.55 -4.68 16 18 C -0.15 -5.47 7.48 71.98 0.54 -4.93 16 19 C -0.51 -28.59 8.62 25.60 0.22 -28.36 16 20 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 21 C 0.01 0.66 5.42 84.65 0.46 1.12 16 22 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 23 Si 0.94 42.10 22.87 68.60 1.57 43.67 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.19 -6.79 4.24 99.48 0.42 -6.36 16 27 C -0.15 -5.03 7.73 22.49 0.17 -4.86 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.42 4.80 8.94 -92.71 -0.83 3.97 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.43 6.46 8.84 -92.71 -0.82 5.64 16 36 H 0.41 9.53 6.22 -92.71 -0.58 8.95 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.88 7.02 -2.39 -0.02 1.86 16 40 H 0.05 1.92 4.11 -2.38 -0.01 1.91 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.45 2.20 -2.39 -0.01 1.44 16 44 H 0.08 2.12 6.86 -2.39 -0.02 2.11 16 45 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.10 4.33 6.21 -2.91 -0.02 4.31 16 Total: -1.00 -87.56 369.85 0.39 -87.17 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -1.46 Total: 27.91 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 7.31 Total: 14.98 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -7.29 Total: -117.76 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: 0.26 Total: -55.97 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.57 Total: 43.67 kcal Total: -87.56 0.39 -87.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495926512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.105 kcal (2) G-P(sol) polarization free energy of solvation -87.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds