Wall clock time and date at job start Tue Mar 31 2020 18:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.08996 * 109.46846 * 309.98089 * 3 2 1 5 5 C 1.52996 * 109.46937 * 189.98131 * 3 2 1 6 6 C 1.53001 * 109.47006 * 69.98425 * 3 2 1 7 7 H 1.09000 * 109.46843 * 173.37734 * 6 3 2 8 8 N 1.46499 * 109.47108 * 53.37788 * 6 3 2 9 9 C 1.34782 * 119.99788 * 93.24935 * 8 6 3 10 10 O 1.21507 * 119.99944 * 5.30532 * 9 8 6 11 11 O 1.34636 * 120.00006 * 185.30054 * 9 8 6 12 12 C 1.45193 * 117.00097 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47311 * 293.37498 * 6 3 2 14 14 O 1.21275 * 119.99652 * 114.87711 * 13 6 3 15 15 N 1.34779 * 120.00010 * 294.88670 * 13 6 3 16 16 C 1.39469 * 119.99762 * 184.28459 * 15 13 6 17 17 C 1.38601 * 119.58187 * 336.91466 * 16 15 13 18 18 C 1.40810 * 118.80006 * 179.97438 * 17 16 15 19 19 C 1.41533 * 120.99956 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00122 * 322.99783 * 19 18 17 21 21 C 1.40034 * 119.99825 * 142.99440 * 19 18 17 22 22 N 1.30745 * 120.00107 * 168.69502 * 21 19 18 23 23 Si 1.86804 * 120.00146 * 348.68923 * 21 19 18 24 24 H 1.48493 * 109.46931 * 93.18823 * 23 21 19 25 25 H 1.48494 * 109.47156 * 213.19036 * 23 21 19 26 26 H 1.48497 * 109.46859 * 333.19319 * 23 21 19 27 27 C 1.41175 * 118.00380 * 0.02562 * 18 17 16 28 28 C 1.37598 * 119.01778 * 359.97438 * 27 18 17 29 29 N 1.32077 * 121.10606 * 0.02562 * 28 27 18 30 30 H 1.08998 * 109.47262 * 168.12515 * 1 2 3 31 31 H 1.08996 * 109.46755 * 288.12587 * 1 2 3 32 32 H 1.08998 * 109.46895 * 48.12286 * 1 2 3 33 33 H 1.09002 * 109.47179 * 239.99665 * 2 1 3 34 34 H 1.09006 * 109.46944 * 119.99754 * 2 1 3 35 35 H 1.08993 * 109.47885 * 306.18573 * 5 3 2 36 36 H 1.09006 * 109.47176 * 66.18404 * 5 3 2 37 37 H 1.09004 * 109.47077 * 186.18056 * 5 3 2 38 38 H 0.96996 * 119.99982 * 273.24034 * 8 6 3 39 39 H 1.09002 * 109.47409 * 299.99941 * 12 11 9 40 40 H 1.09003 * 109.47216 * 60.00203 * 12 11 9 41 41 H 1.09007 * 109.47146 * 180.02562 * 12 11 9 42 42 H 0.96996 * 119.99939 * 4.28317 * 15 13 6 43 43 H 1.08002 * 120.60075 * 0.02562 * 17 16 15 44 44 H 0.97002 * 120.00257 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.49476 * 180.02562 * 27 18 17 46 46 H 1.07991 * 119.44693 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5386 2.0051 -0.7874 5 6 3.5494 1.4497 -0.2500 6 6 1.7446 2.0879 1.3554 7 1 2.2100 3.0726 1.3981 8 7 2.2847 1.2456 2.4254 9 6 3.5214 1.4793 2.9078 10 8 4.1504 2.4456 2.5244 11 8 4.0597 0.6422 3.8144 12 6 5.3950 0.9561 4.2903 13 6 0.2544 2.2286 1.5306 14 8 -0.3152 1.6058 2.4014 15 7 -0.4452 3.0466 0.7194 16 6 -1.8083 3.2460 0.9374 17 6 -2.5367 2.2930 1.6319 18 6 -3.9116 2.5112 1.8431 19 6 -4.6998 1.5687 2.5455 20 1 -4.5158 0.5117 2.4219 21 6 -5.7184 2.0066 3.4010 22 7 -6.5857 1.1515 3.8763 23 14 -5.8378 3.8127 3.8632 24 1 -6.7604 4.5032 2.9267 25 1 -6.3560 3.9356 5.2493 26 1 -4.4919 4.4347 3.7808 27 6 -4.4806 3.6979 1.3321 28 6 -3.6766 4.5859 0.6550 29 7 -2.3903 4.3438 0.4782 30 1 -0.3634 -1.0056 -0.2115 31 1 -0.3633 0.3197 0.9767 32 1 -0.3633 0.6860 -0.7652 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 4.0406 0.7979 0.4723 36 1 3.7523 1.0915 -1.2593 37 1 3.9309 2.4650 -0.1414 38 1 1.7523 0.5199 2.7869 39 1 6.0884 0.9621 3.4494 40 1 5.3904 1.9376 4.7645 41 1 5.7089 0.2039 5.0142 42 1 -0.0007 3.4966 -0.0160 43 1 -2.0582 1.3995 2.0050 44 1 -7.2914 1.4549 4.4686 45 1 -5.5311 3.9062 1.4714 46 1 -4.1045 5.4960 0.2617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496397354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:01 Heat of formation + Delta-G solvation = -77.118691 kcal Electronic energy + Delta-G solvation = -30001.599212 eV Core-core repulsion = 25891.801361 eV Total energy + Delta-G solvation = -4109.797851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27000 -40.18732 -38.57189 -37.20067 -36.06989 -34.79591 -33.83718 -33.53397 -31.32108 -30.50265 -29.52041 -28.17173 -26.83444 -25.96143 -23.63890 -22.72445 -21.81562 -21.41977 -20.79789 -19.79398 -19.14149 -18.10908 -17.31340 -17.00449 -16.66960 -16.14413 -15.96169 -15.61585 -15.09657 -14.80953 -14.38379 -14.27117 -14.02346 -13.84397 -13.65875 -13.42623 -13.20129 -13.07935 -12.96484 -12.67845 -12.51426 -12.29734 -12.12931 -11.68791 -11.55898 -11.37993 -11.07292 -10.97170 -10.94932 -10.87015 -10.81326 -10.65263 -10.53566 -10.04387 -9.83740 -9.63816 -9.41165 -9.03179 -8.36940 -8.17038 -7.41880 -6.97719 -4.68535 1.89605 2.10188 2.51305 2.61631 2.87789 3.08339 3.15140 3.19486 3.28354 3.94146 4.06002 4.45580 4.48544 4.55596 4.63604 4.91573 4.92681 5.00019 5.17076 5.27123 5.28767 5.32266 5.39008 5.57442 5.59198 5.60307 5.72198 5.87156 6.00890 6.04912 6.10431 6.15168 6.20670 6.22931 6.32078 6.43322 6.49554 6.66490 6.99048 7.06218 7.18731 7.22457 7.49830 7.76301 7.86368 8.14921 8.26652 8.32388 8.45732 8.69585 9.17297 10.04412 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003260 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.217879 B = 8586.886877 C = 9125.786722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 C -0.102 4.102 4 H 0.089 0.911 5 C -0.140 4.140 6 C 0.150 3.850 7 H 0.124 0.876 8 N -0.686 5.686 9 C 0.653 3.347 10 O -0.572 6.572 11 O -0.370 6.370 12 C 0.057 3.943 13 C 0.517 3.483 14 O -0.502 6.502 15 N -0.644 5.644 16 C 0.336 3.664 17 C -0.247 4.247 18 C 0.119 3.881 19 C -0.439 4.439 20 H 0.095 0.905 21 C 0.087 3.913 22 N -0.808 5.808 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.247 1.247 27 C -0.290 4.290 28 C 0.134 3.866 29 N -0.593 5.593 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.418 0.582 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.406 0.594 43 H 0.148 0.852 44 H 0.286 0.714 45 H 0.110 0.890 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.294 -0.810 -4.313 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.108 0.892 5 C -0.197 4.197 6 C 0.042 3.958 7 H 0.142 0.858 8 N -0.346 5.346 9 C 0.406 3.594 10 O -0.461 6.461 11 O -0.283 6.283 12 C -0.037 4.037 13 C 0.302 3.698 14 O -0.377 6.377 15 N -0.288 5.288 16 C 0.114 3.886 17 C -0.272 4.272 18 C 0.111 3.889 19 C -0.470 4.470 20 H 0.113 0.887 21 C -0.133 4.133 22 N -0.433 5.433 23 Si 0.737 3.263 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.171 1.171 27 C -0.313 4.313 28 C -0.020 4.020 29 N -0.313 5.313 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.241 0.759 43 H 0.165 0.835 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.634 -0.324 -4.120 19.087 hybrid contribution -0.729 0.181 0.540 0.925 sum 17.905 -0.144 -3.580 18.260 Atomic orbital electron populations 1.22379 0.94902 1.02397 1.04716 1.21589 0.96593 0.95041 1.02337 1.21699 0.98022 0.97839 0.94649 0.89246 1.21790 0.93909 1.02721 1.01274 1.20853 0.90888 0.96950 0.87140 0.85802 1.44168 1.14176 1.36922 1.39341 1.17949 0.82329 0.80981 0.78112 1.90989 1.62172 1.30016 1.62911 1.86262 1.34334 1.51737 1.55995 1.23199 0.78700 1.02448 0.99384 1.20264 0.88688 0.79457 0.81351 1.90691 1.69590 1.44080 1.33322 1.43048 1.08294 1.46014 1.31481 1.17958 0.82461 0.91621 0.96565 1.22463 0.93602 1.02460 1.08652 1.17939 0.91097 0.91034 0.88868 1.19431 1.10666 0.95646 1.21228 0.88719 1.26095 0.92507 1.00342 0.94334 1.69603 1.11083 1.37489 1.25117 0.86290 0.80804 0.82131 0.77087 1.19285 1.21535 1.17065 1.22012 0.99955 1.00517 1.08816 1.21626 0.87990 0.97254 0.95145 1.66661 1.13306 1.20950 1.30373 0.92569 0.89686 0.92601 0.91662 0.91612 0.92955 0.92327 0.91699 0.74401 0.91858 0.91789 0.87985 0.75878 0.83479 0.90300 0.87182 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 8.76 37.16 0.33 -2.11 16 2 C -0.12 -1.23 5.30 -26.73 -0.14 -1.37 16 3 C -0.10 -1.02 2.36 -90.62 -0.21 -1.23 16 4 H 0.09 0.80 7.49 -51.93 -0.39 0.41 16 5 C -0.14 -1.30 8.04 37.16 0.30 -1.00 16 6 C 0.15 1.81 2.33 -69.08 -0.16 1.65 16 7 H 0.12 1.49 7.25 -51.93 -0.38 1.11 16 8 N -0.69 -8.41 3.73 -59.86 -0.22 -8.64 16 9 C 0.65 8.39 7.37 54.06 0.40 8.79 16 10 O -0.57 -8.30 14.71 -19.28 -0.28 -8.58 16 11 O -0.37 -4.19 10.61 -40.31 -0.43 -4.62 16 12 C 0.06 0.45 10.56 101.05 1.07 1.52 16 13 C 0.52 7.98 4.39 -10.98 -0.05 7.93 16 14 O -0.50 -9.44 10.93 5.56 0.06 -9.38 16 15 N -0.64 -10.36 5.32 -11.49 -0.06 -10.42 16 16 C 0.34 7.08 7.48 -154.70 -1.16 5.92 16 17 C -0.25 -5.84 8.64 -38.48 -0.33 -6.18 16 18 C 0.12 3.02 4.98 -106.56 -0.53 2.49 16 19 C -0.44 -11.83 9.64 -37.65 -0.36 -12.20 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 21 C 0.09 2.26 5.48 -17.34 -0.09 2.16 16 22 N -0.81 -21.38 13.92 55.55 0.77 -20.60 16 23 Si 0.91 20.72 24.60 -169.99 -4.18 16.54 16 24 H -0.27 -5.76 6.79 56.52 0.38 -5.38 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.25 -5.90 6.78 56.52 0.38 -5.52 16 27 C -0.29 -6.79 7.17 -38.70 -0.28 -7.06 16 28 C 0.13 2.86 11.15 -17.68 -0.20 2.66 16 29 N -0.59 -12.69 10.36 -12.52 -0.13 -12.82 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.33 4.02 -51.93 -0.21 1.12 16 32 H 0.05 0.74 7.99 -51.93 -0.41 0.32 16 33 H 0.06 0.61 8.11 -51.93 -0.42 0.18 16 34 H 0.07 0.69 6.83 -51.93 -0.35 0.34 16 35 H 0.05 0.54 6.92 -51.93 -0.36 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.42 5.13 7.65 -40.82 -0.31 4.82 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.41 5.25 8.39 -40.82 -0.34 4.91 16 43 H 0.15 3.52 5.06 -52.53 -0.27 3.26 16 44 H 0.29 6.86 8.29 -40.82 -0.34 6.52 16 45 H 0.11 2.52 5.27 -52.49 -0.28 2.24 16 46 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -30.88 366.62 -6.64 -37.53 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.27 Total: 13.51 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.43 Total: 1.97 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.36 Total: -52.48 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.65 Total: -22.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.18 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.88 -6.64 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496397354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.591 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds