Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.08996 * 109.46846 * 309.98089 * 3 2 1 5 5 C 1.52996 * 109.46937 * 189.98131 * 3 2 1 6 6 C 1.53001 * 109.47006 * 69.98425 * 3 2 1 7 7 H 1.09000 * 109.46843 * 173.37734 * 6 3 2 8 8 N 1.46499 * 109.47108 * 53.37788 * 6 3 2 9 9 C 1.34782 * 119.99788 * 93.24935 * 8 6 3 10 10 O 1.21507 * 119.99944 * 5.30532 * 9 8 6 11 11 O 1.34636 * 120.00006 * 185.30054 * 9 8 6 12 12 C 1.45193 * 117.00097 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47311 * 293.37498 * 6 3 2 14 14 O 1.21275 * 119.99652 * 114.87711 * 13 6 3 15 15 N 1.34779 * 120.00010 * 294.88670 * 13 6 3 16 16 C 1.39469 * 119.99762 * 184.28459 * 15 13 6 17 17 C 1.38601 * 119.58187 * 336.91466 * 16 15 13 18 18 C 1.40810 * 118.80006 * 179.97438 * 17 16 15 19 19 C 1.41533 * 120.99956 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00122 * 322.99783 * 19 18 17 21 21 C 1.40034 * 119.99825 * 142.99440 * 19 18 17 22 22 N 1.30745 * 120.00107 * 168.69502 * 21 19 18 23 23 Si 1.86804 * 120.00146 * 348.68923 * 21 19 18 24 24 H 1.48493 * 109.46931 * 93.18823 * 23 21 19 25 25 H 1.48494 * 109.47156 * 213.19036 * 23 21 19 26 26 H 1.48497 * 109.46859 * 333.19319 * 23 21 19 27 27 C 1.41175 * 118.00380 * 0.02562 * 18 17 16 28 28 C 1.37598 * 119.01778 * 359.97438 * 27 18 17 29 29 N 1.32077 * 121.10606 * 0.02562 * 28 27 18 30 30 H 1.08998 * 109.47262 * 168.12515 * 1 2 3 31 31 H 1.08996 * 109.46755 * 288.12587 * 1 2 3 32 32 H 1.08998 * 109.46895 * 48.12286 * 1 2 3 33 33 H 1.09002 * 109.47179 * 239.99665 * 2 1 3 34 34 H 1.09006 * 109.46944 * 119.99754 * 2 1 3 35 35 H 1.08993 * 109.47885 * 306.18573 * 5 3 2 36 36 H 1.09006 * 109.47176 * 66.18404 * 5 3 2 37 37 H 1.09004 * 109.47077 * 186.18056 * 5 3 2 38 38 H 0.96996 * 119.99982 * 273.24034 * 8 6 3 39 39 H 1.09002 * 109.47409 * 299.99941 * 12 11 9 40 40 H 1.09003 * 109.47216 * 60.00203 * 12 11 9 41 41 H 1.09007 * 109.47146 * 180.02562 * 12 11 9 42 42 H 0.96996 * 119.99939 * 4.28317 * 15 13 6 43 43 H 1.08002 * 120.60075 * 0.02562 * 17 16 15 44 44 H 0.97002 * 120.00257 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.49476 * 180.02562 * 27 18 17 46 46 H 1.07991 * 119.44693 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5386 2.0051 -0.7874 5 6 3.5494 1.4497 -0.2500 6 6 1.7446 2.0879 1.3554 7 1 2.2100 3.0726 1.3981 8 7 2.2847 1.2456 2.4254 9 6 3.5214 1.4793 2.9078 10 8 4.1504 2.4456 2.5244 11 8 4.0597 0.6422 3.8144 12 6 5.3950 0.9561 4.2903 13 6 0.2544 2.2286 1.5306 14 8 -0.3152 1.6058 2.4014 15 7 -0.4452 3.0466 0.7194 16 6 -1.8083 3.2460 0.9374 17 6 -2.5367 2.2930 1.6319 18 6 -3.9116 2.5112 1.8431 19 6 -4.6998 1.5687 2.5455 20 1 -4.5158 0.5117 2.4219 21 6 -5.7184 2.0066 3.4010 22 7 -6.5857 1.1515 3.8763 23 14 -5.8378 3.8127 3.8632 24 1 -6.7604 4.5032 2.9267 25 1 -6.3560 3.9356 5.2493 26 1 -4.4919 4.4347 3.7808 27 6 -4.4806 3.6979 1.3321 28 6 -3.6766 4.5859 0.6550 29 7 -2.3903 4.3438 0.4782 30 1 -0.3634 -1.0056 -0.2115 31 1 -0.3633 0.3197 0.9767 32 1 -0.3633 0.6860 -0.7652 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 4.0406 0.7979 0.4723 36 1 3.7523 1.0915 -1.2593 37 1 3.9309 2.4650 -0.1414 38 1 1.7523 0.5199 2.7869 39 1 6.0884 0.9621 3.4494 40 1 5.3904 1.9376 4.7645 41 1 5.7089 0.2039 5.0142 42 1 -0.0007 3.4966 -0.0160 43 1 -2.0582 1.3995 2.0050 44 1 -7.2914 1.4549 4.4686 45 1 -5.5311 3.9062 1.4714 46 1 -4.1045 5.4960 0.2617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496397354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = -98.700678 kcal Electronic energy + Delta-G solvation = -30002.535077 eV Core-core repulsion = 25891.801361 eV Total energy + Delta-G solvation = -4110.733717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45003 -41.35748 -40.12733 -38.30426 -37.04747 -36.40630 -35.47074 -34.67076 -33.19589 -31.56007 -30.92172 -29.14013 -27.93720 -27.71846 -24.71748 -24.13986 -23.18626 -22.74600 -22.17568 -20.79218 -20.20687 -19.83378 -18.62064 -18.04159 -17.87662 -17.55190 -17.37106 -16.98458 -16.46969 -16.12618 -16.08714 -15.41043 -15.30881 -15.00216 -14.84085 -14.76800 -14.51366 -14.41696 -14.20986 -13.96167 -13.65761 -13.41169 -13.16637 -12.98146 -12.88888 -12.77406 -12.66187 -12.57527 -11.98630 -11.87670 -11.86653 -11.77196 -11.74577 -11.57848 -11.35798 -11.23463 -10.80797 -10.30729 -10.17882 -10.02927 -9.09872 -8.92189 -6.71120 0.45191 0.69135 0.95047 1.23822 1.37291 1.40653 1.48367 1.63318 1.89730 2.09244 2.63674 3.13997 3.33895 3.43611 3.59671 3.72456 4.00240 4.01450 4.25969 4.35378 4.36145 4.39166 4.50011 4.54179 4.57551 4.63960 4.69900 4.70373 4.73450 4.85855 4.90461 5.01330 5.10084 5.13176 5.22093 5.23266 5.28640 5.29112 5.38551 5.42704 5.46851 5.78303 6.05183 6.14594 6.22085 6.30873 6.54175 6.69753 6.98598 7.17328 7.41298 8.16148 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003260 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.217879 B = 8586.886877 C = 9125.786722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.107 0.893 5 C -0.132 4.132 6 C 0.161 3.839 7 H 0.132 0.868 8 N -0.686 5.686 9 C 0.654 3.346 10 O -0.589 6.589 11 O -0.377 6.377 12 C 0.049 3.951 13 C 0.520 3.480 14 O -0.534 6.534 15 N -0.634 5.634 16 C 0.349 3.651 17 C -0.270 4.270 18 C 0.106 3.894 19 C -0.478 4.478 20 H 0.056 0.944 21 C 0.051 3.949 22 N -0.848 5.848 23 Si 0.966 3.034 24 H -0.242 1.242 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.301 4.301 28 C 0.139 3.861 29 N -0.583 5.583 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.133 0.867 42 H 0.425 0.575 43 H 0.136 0.864 44 H 0.296 0.704 45 H 0.117 0.883 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.228 1.288 -5.678 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.125 0.875 5 C -0.189 4.189 6 C 0.052 3.948 7 H 0.150 0.850 8 N -0.346 5.346 9 C 0.408 3.592 10 O -0.480 6.480 11 O -0.290 6.290 12 C -0.044 4.044 13 C 0.308 3.692 14 O -0.411 6.411 15 N -0.280 5.280 16 C 0.124 3.876 17 C -0.295 4.295 18 C 0.097 3.903 19 C -0.509 4.509 20 H 0.074 0.926 21 C -0.164 4.164 22 N -0.475 5.475 23 Si 0.788 3.212 24 H -0.166 1.166 25 H -0.203 1.203 26 H -0.188 1.188 27 C -0.323 4.323 28 C -0.015 4.015 29 N -0.302 5.302 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.151 0.849 42 H 0.264 0.736 43 H 0.154 0.846 44 H 0.106 0.894 45 H 0.134 0.866 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 20.596 1.760 -5.503 21.391 hybrid contribution -1.130 -0.509 0.897 1.530 sum 19.466 1.251 -4.605 20.042 Atomic orbital electron populations 1.22319 0.97005 1.02061 1.02800 1.21548 0.94398 0.95712 1.03238 1.21725 0.98971 0.97383 0.93468 0.87527 1.21720 0.92653 1.02420 1.02115 1.20867 0.87742 0.97747 0.88395 0.85040 1.44205 1.14215 1.36753 1.39456 1.17998 0.82231 0.80867 0.78136 1.90971 1.62625 1.30768 1.63641 1.86276 1.35910 1.51434 1.55405 1.23528 0.77200 1.03485 1.00211 1.20931 0.90017 0.78032 0.80268 1.90692 1.70629 1.45074 1.34725 1.42960 1.06436 1.46310 1.32320 1.18083 0.84275 0.90504 0.94727 1.22503 0.93570 1.03223 1.10186 1.18094 0.91684 0.91739 0.88778 1.19381 1.13090 0.94355 1.24111 0.92596 1.26769 0.91848 1.04069 0.93729 1.69633 1.12143 1.39209 1.26484 0.85475 0.80222 0.77550 0.77936 1.16581 1.20289 1.18843 1.22156 1.00710 1.00180 1.09304 1.22309 0.87677 0.98018 0.93542 1.66900 1.13460 1.20296 1.29547 0.92785 0.92507 0.92864 0.89657 0.91818 0.93992 0.90354 0.91972 0.74524 0.91312 0.92083 0.84942 0.73642 0.84623 0.89365 0.86562 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 8.76 71.98 0.63 -4.14 16 2 C -0.11 -2.13 5.30 30.60 0.16 -1.97 16 3 C -0.10 -1.67 2.36 -10.79 -0.03 -1.70 16 4 H 0.11 1.54 7.49 -2.39 -0.02 1.52 16 5 C -0.13 -2.08 8.04 71.98 0.58 -1.50 16 6 C 0.16 3.63 2.33 44.25 0.10 3.74 16 7 H 0.13 2.88 7.25 -2.39 -0.02 2.86 16 8 N -0.69 -16.32 3.73 -573.72 -2.14 -18.46 16 9 C 0.65 16.09 7.37 129.79 0.96 17.05 16 10 O -0.59 -16.26 14.71 19.82 0.29 -15.96 16 11 O -0.38 -8.13 10.61 -55.45 -0.59 -8.72 16 12 C 0.05 0.70 10.56 113.37 1.20 1.89 16 13 C 0.52 15.74 4.39 87.66 0.39 16.13 16 14 O -0.53 -20.63 10.93 -3.01 -0.03 -20.66 16 15 N -0.63 -19.45 5.32 -308.65 -1.64 -21.09 16 16 C 0.35 14.31 7.48 132.75 0.99 15.31 16 17 C -0.27 -13.09 8.64 22.99 0.20 -12.89 16 18 C 0.11 5.48 4.98 -21.12 -0.11 5.37 16 19 C -0.48 -27.31 9.64 23.52 0.23 -27.09 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 21 C 0.05 2.75 5.48 85.29 0.47 3.22 16 22 N -0.85 -46.66 13.92 21.84 0.30 -46.35 16 23 Si 0.97 42.67 24.60 68.60 1.69 44.36 16 24 H -0.24 -9.61 6.79 99.48 0.68 -8.94 16 25 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.26 -12.29 6.78 99.48 0.67 -11.61 16 27 C -0.30 -13.77 7.17 22.84 0.16 -13.60 16 28 C 0.14 5.52 11.15 84.50 0.94 6.47 16 29 N -0.58 -23.39 10.36 -193.53 -2.01 -25.39 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.83 4.02 -2.39 -0.01 1.82 16 32 H 0.05 1.36 7.99 -2.39 -0.02 1.35 16 33 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.06 1.27 6.83 -2.38 -0.02 1.25 16 35 H 0.04 0.76 6.92 -2.39 -0.02 0.74 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 37 H 0.06 1.04 8.03 -2.39 -0.02 1.03 16 38 H 0.42 10.26 7.65 -92.71 -0.71 9.55 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.42 9.82 8.39 -92.71 -0.78 9.05 16 43 H 0.14 6.87 5.06 -3.56 -0.02 6.86 16 44 H 0.30 14.55 8.29 -92.71 -0.77 13.78 16 45 H 0.12 5.13 5.27 -2.91 -0.02 5.11 16 46 H 0.18 5.40 8.06 -2.92 -0.02 5.37 16 Total: -1.00 -69.54 366.62 2.23 -67.31 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -0.51 Total: 38.69 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.87 Total: 6.29 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -5.49 Total: -111.30 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.33 Total: -45.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.69 Total: 44.36 kcal Total: -69.54 2.23 -67.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496397354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.395 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds