Wall clock time and date at job start Tue Mar 31 2020 18:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46945 * 2 1 4 4 C 1.52992 * 109.47155 * 239.99806 * 2 1 3 5 5 O 1.45200 * 109.47027 * 119.99569 * 2 1 3 6 6 C 1.34639 * 116.99950 * 60.00210 * 5 2 1 7 7 O 1.21509 * 120.00124 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00622 * 179.97438 * 6 5 2 9 9 C 1.39459 * 120.00573 * 185.30939 * 8 6 5 10 10 C 1.39366 * 120.39431 * 32.86865 * 9 8 6 11 11 C 1.38289 * 118.43371 * 179.97438 * 10 9 8 12 12 C 1.39491 * 119.14378 * 359.97438 * 11 10 9 13 13 C 1.47905 * 119.64104 * 179.97438 * 12 11 10 14 14 O 1.21557 * 119.99770 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00217 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00179 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47353 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47402 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00112 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00283 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99746 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00389 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46922 * 60.00317 * 22 20 18 24 24 H 1.48498 * 109.47331 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47237 * 300.00491 * 22 20 18 26 26 N 1.32809 * 120.71799 * 359.97438 * 12 11 10 27 27 C 1.31357 * 121.70802 * 0.04260 * 26 12 11 28 28 H 1.09001 * 109.47534 * 300.00596 * 1 2 3 29 29 H 1.09007 * 109.46982 * 60.00268 * 1 2 3 30 30 H 1.09000 * 109.47479 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46986 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47281 * 299.99937 * 3 2 1 33 33 H 1.08997 * 109.47647 * 59.99838 * 3 2 1 34 34 H 1.09000 * 109.47611 * 300.00149 * 4 2 1 35 35 H 1.09003 * 109.47573 * 60.00455 * 4 2 1 36 36 H 1.09005 * 109.47129 * 179.97438 * 4 2 1 37 37 H 0.96999 * 119.99384 * 5.30849 * 8 6 5 38 38 H 1.07999 * 120.78700 * 359.95383 * 10 9 8 39 39 H 1.07995 * 120.42689 * 179.72854 * 11 10 9 40 40 H 0.96999 * 119.99778 * 359.97438 * 15 13 12 41 41 H 1.08996 * 109.47593 * 299.99943 * 16 15 13 42 42 H 1.09002 * 109.47197 * 60.00245 * 16 15 13 43 43 H 1.09003 * 109.46649 * 300.00259 * 17 16 15 44 44 H 1.09002 * 109.46629 * 60.00069 * 17 16 15 45 45 H 0.97001 * 119.99810 * 179.97438 * 21 20 18 46 46 H 1.07997 * 119.60483 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5042 8 7 2.0679 -2.6657 2.4167 9 6 1.7870 -4.0277 2.5208 10 6 1.7276 -4.8247 1.3791 11 6 1.4464 -6.1703 1.5293 12 6 1.2338 -6.6811 2.8098 13 6 0.9317 -8.1186 2.9831 14 8 0.8704 -8.8480 2.0127 15 7 0.7245 -8.6197 4.2170 16 6 0.4259 -10.0435 4.3887 17 6 0.2362 -10.3492 5.8759 18 6 -0.0716 -11.8138 6.0524 19 1 -0.1260 -12.4619 5.1903 20 6 -0.2826 -12.3266 7.3147 21 7 -0.2158 -11.5374 8.3647 22 14 -0.6634 -14.1422 7.5337 23 1 0.4619 -14.9517 7.0012 24 1 -0.8464 -14.4390 8.9772 25 1 -1.9079 -14.4793 6.7968 26 7 1.2996 -5.8906 3.8750 27 6 1.5640 -4.6084 3.7680 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.5626 -2.2173 3.1204 38 1 1.8968 -4.4014 0.4000 39 1 1.3883 -6.8166 0.6660 40 1 0.7738 -8.0376 4.9914 41 1 -0.4870 -10.2913 3.8472 42 1 1.2523 -10.6377 3.9986 43 1 1.1495 -10.1016 6.4170 44 1 -0.5900 -9.7550 6.2663 45 1 -0.3647 -11.8981 9.2528 46 1 1.6089 -3.9969 4.6570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496764062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:17 Heat of formation + Delta-G solvation = -86.952619 kcal Electronic energy + Delta-G solvation = -27641.251552 eV Core-core repulsion = 23531.027269 eV Total energy + Delta-G solvation = -4110.224283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69787 -40.55600 -38.92323 -37.78049 -35.60861 -34.89175 -34.49617 -32.87138 -32.33567 -30.73377 -29.30143 -27.92340 -27.86859 -25.63921 -24.43549 -23.84935 -22.61523 -21.07932 -20.73248 -20.33411 -18.94630 -18.07331 -17.73325 -16.94400 -16.60790 -16.56262 -16.20974 -15.23360 -15.14096 -14.98792 -14.81174 -14.73768 -14.44384 -14.08592 -13.99114 -13.81492 -13.26853 -13.01832 -12.98219 -12.73736 -12.67026 -12.45133 -12.40893 -12.25286 -12.11475 -11.85040 -11.31891 -11.17414 -10.98636 -10.89590 -10.64321 -10.63144 -10.28395 -10.18869 -9.93727 -9.73906 -9.43086 -9.19902 -8.75929 -8.47599 -8.29228 -6.04854 -4.07817 0.41348 1.02636 1.49356 2.20247 2.92457 3.34319 3.37884 3.40123 3.43602 3.57647 3.86102 4.15259 4.17823 4.23499 4.37434 4.44277 4.46329 4.59574 4.83525 4.97208 4.98205 5.04546 5.10269 5.19466 5.28813 5.31885 5.35209 5.39753 5.49610 5.56332 5.72422 5.79274 5.83753 5.84394 6.01626 6.33325 6.37999 6.40071 6.70349 6.76990 6.92734 7.49841 7.59270 7.67222 7.73313 7.93140 8.07624 8.31315 8.61834 8.97840 9.56591 11.06633 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036952 B = 0.001676 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.556807 B =16704.065799 C =17115.995813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.358 6.358 6 C 0.652 3.348 7 O -0.545 6.545 8 N -0.645 5.645 9 C 0.123 3.877 10 C -0.086 4.086 11 C -0.090 4.090 12 C 0.072 3.928 13 C 0.560 3.440 14 O -0.545 6.545 15 N -0.698 5.698 16 C 0.119 3.881 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.432 5.432 27 C 0.084 3.916 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.408 0.592 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.262 0.738 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 29.727 -15.626 34.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.243 4.243 5 O -0.273 6.273 6 C 0.407 3.593 7 O -0.432 6.432 8 N -0.297 5.297 9 C 0.026 3.974 10 C -0.114 4.114 11 C -0.111 4.111 12 C -0.067 4.067 13 C 0.344 3.656 14 O -0.423 6.423 15 N -0.347 5.347 16 C -0.003 4.003 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 N -0.143 5.143 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.258 0.742 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.244 0.756 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.131 28.645 -15.776 33.272 hybrid contribution 0.157 0.082 0.116 0.212 sum 6.288 28.727 -15.660 33.317 Atomic orbital electron populations 1.22540 0.93636 1.05268 1.02843 1.22190 0.94610 0.91574 0.81645 1.21878 1.02368 0.92203 1.03392 1.22538 1.01712 1.03513 0.96491 1.86313 1.71049 1.22925 1.47024 1.18029 0.78491 0.80888 0.81926 1.90959 1.39332 1.70218 1.42728 1.41807 1.58213 1.07243 1.22395 1.18722 1.00653 0.82019 0.95991 1.21596 0.98179 0.92497 0.99121 1.22058 0.95681 0.94896 0.98485 1.21402 1.00689 0.94942 0.89650 1.17777 0.78183 0.85407 0.84238 1.90771 1.52840 1.59146 1.39505 1.46221 1.68239 1.12443 1.07796 1.21823 0.99932 0.77410 1.01149 1.19330 0.97855 0.97410 0.87936 1.21013 1.48725 0.93534 0.92816 0.92271 1.24994 0.95217 0.98127 0.95932 1.69957 1.49497 1.35323 0.98435 0.86569 0.78998 0.85001 0.76925 1.20139 1.21277 1.20132 1.67611 1.09845 1.04363 1.32497 1.22609 0.98438 0.91468 0.95406 0.91971 0.90808 0.89306 0.91326 0.89865 0.91311 0.89361 0.90784 0.91972 0.74195 0.83031 0.82862 0.75617 0.92249 0.92254 0.95787 0.95789 0.92824 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 8.37 37.16 0.31 -0.92 16 2 C 0.14 0.87 1.13 -90.62 -0.10 0.77 16 3 C -0.14 -0.57 8.85 37.16 0.33 -0.24 16 4 C -0.19 -1.17 8.37 37.15 0.31 -0.86 16 5 O -0.36 -2.77 9.94 -40.32 -0.40 -3.17 16 6 C 0.65 5.85 7.81 54.05 0.42 6.27 16 7 O -0.55 -6.08 9.56 -19.28 -0.18 -6.26 16 8 N -0.64 -4.72 5.34 -14.15 -0.08 -4.80 16 9 C 0.12 1.19 6.31 -83.55 -0.53 0.66 16 10 C -0.09 -0.95 8.75 -39.14 -0.34 -1.29 16 11 C -0.09 -1.16 9.62 -39.10 -0.38 -1.54 16 12 C 0.07 1.09 6.74 -83.02 -0.56 0.53 16 13 C 0.56 10.36 7.80 -12.30 -0.10 10.26 16 14 O -0.54 -11.45 16.31 5.32 0.09 -11.36 16 15 N -0.70 -13.32 5.54 -61.23 -0.34 -13.66 16 16 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 N -0.43 -5.86 9.52 -9.65 -0.09 -5.96 16 27 C 0.08 0.85 11.12 -17.33 -0.19 0.65 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.81 5.88 -51.93 -0.31 0.50 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.75 5.88 -51.93 -0.31 0.44 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.42 1.77 8.92 -40.82 -0.36 1.41 16 38 H 0.15 1.58 6.47 -52.49 -0.34 1.24 16 39 H 0.15 1.91 7.63 -52.49 -0.40 1.51 16 40 H 0.41 7.26 7.79 -40.82 -0.32 6.94 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 46 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -33.56 386.76 -7.51 -41.07 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.65 Total: 3.75 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.40 Total: 3.64 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.23 Total: -50.06 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.50 Total: -20.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.56 -7.51 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496764062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.880 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds