Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 H 1.07999 * 120.00196 * 120.00212 * 4 2 1 6 6 C 1.37879 * 119.99394 * 300.00080 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 13 13 S 1.81399 * 109.47162 * 60.00198 * 12 2 1 14 14 O 1.42097 * 110.54031 * 291.62403 * 13 12 2 15 15 O 1.42096 * 110.54122 * 68.37573 * 13 12 2 16 16 N 1.65601 * 104.44938 * 179.97438 * 13 12 2 17 17 C 1.46927 * 120.62977 * 269.71959 * 16 13 12 18 18 C 1.52757 * 109.00798 * 233.58163 * 17 16 13 19 19 C 1.53041 * 109.38637 * 305.59302 * 18 17 16 20 20 O 1.42900 * 109.45022 * 181.25270 * 19 18 17 21 21 C 1.42904 * 113.99925 * 89.93635 * 20 19 18 22 22 C 1.53000 * 109.47075 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.46914 * 64.99892 * 22 21 20 24 24 C 1.53033 * 109.54036 * 61.23590 * 19 18 17 25 25 C 1.46924 * 120.62980 * 89.99822 * 16 13 12 26 26 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46930 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 12 2 1 35 35 H 1.08998 * 109.59041 * 353.42113 * 17 16 13 36 36 H 1.09008 * 109.58390 * 113.84455 * 17 16 13 37 37 H 1.08993 * 109.56590 * 185.55392 * 18 17 16 38 38 H 1.09003 * 109.35725 * 65.49769 * 18 17 16 39 39 H 1.09009 * 109.45813 * 301.21953 * 19 18 17 40 40 H 1.08997 * 109.46970 * 299.99879 * 21 20 19 41 41 H 1.09006 * 109.47018 * 60.00079 * 21 20 19 42 42 H 1.08998 * 109.47425 * 184.99816 * 22 21 20 43 43 H 1.09001 * 109.47006 * 305.00241 * 22 21 20 44 44 H 0.96697 * 113.99941 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.50241 * 178.68630 * 24 19 18 46 46 H 1.09000 * 109.49880 * 58.58492 * 24 19 18 47 47 H 1.09003 * 109.58937 * 246.15681 * 25 16 13 48 48 H 1.09001 * 109.58543 * 6.43721 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1677 -1.5866 4.8165 12 6 2.0400 -0.7213 -1.2493 13 16 1.4354 0.1339 -2.7304 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4099 -2.8544 16 7 2.0541 -0.7400 -3.9936 17 6 3.3632 -0.4010 -4.5683 18 6 3.2099 -0.2086 -6.0759 19 6 2.5598 -1.4538 -6.6834 20 8 2.4424 -1.2874 -8.0978 21 6 3.5742 -1.7553 -8.8341 22 6 3.3395 -1.5286 -10.3289 23 8 3.2704 -0.1259 -10.5928 24 6 1.1692 -1.6531 -6.0763 25 6 1.3019 -1.8654 -4.5649 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7094 1.1618 3.4843 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 3.7316 0.5213 -4.1192 36 1 4.0675 -1.2104 -4.3757 37 1 4.1906 -0.0541 -6.5258 38 1 2.5803 0.6604 -6.2672 39 1 3.1774 -2.3265 -6.4705 40 1 4.4636 -1.2097 -8.5187 41 1 3.7152 -2.8197 -8.6461 42 1 4.1616 -1.9649 -10.8961 43 1 2.4027 -2.0007 -10.6252 44 1 3.1223 0.0924 -11.5231 45 1 0.6975 -2.5266 -6.5263 46 1 0.5589 -0.7705 -6.2674 47 1 1.8346 -2.7966 -4.3721 48 1 0.3116 -1.9105 -4.1118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571106278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -171.222247 kcal Electronic energy + Delta-G solvation = -28618.614165 eV Core-core repulsion = 24607.886877 eV Total energy + Delta-G solvation = -4010.727288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.39186 -37.57238 -36.60957 -36.34228 -36.23446 -35.25654 -31.77305 -31.65772 -31.19713 -29.44007 -26.62792 -25.71315 -25.23228 -24.05771 -23.55542 -22.63018 -20.62876 -19.45411 -18.42431 -17.94934 -17.59833 -16.99551 -15.98997 -15.86182 -15.40803 -15.36388 -15.14527 -14.72067 -14.65584 -14.48858 -14.28799 -13.67959 -13.39942 -13.02367 -12.99949 -12.88031 -12.53008 -12.50331 -12.25410 -12.04587 -11.65706 -11.49941 -11.31705 -11.18679 -11.14261 -11.05605 -10.95822 -10.88111 -10.70196 -10.65001 -10.39587 -10.34039 -10.26969 -10.09904 -9.65259 -9.64179 -9.57640 -8.96134 -8.61893 -8.40781 -6.03713 -4.15685 0.83069 3.07272 3.24437 3.32897 3.35346 3.36841 3.88021 4.33522 4.41161 4.54569 4.58132 4.70535 4.76120 4.82723 4.86131 5.03241 5.05860 5.12332 5.17996 5.21485 5.25659 5.36387 5.46620 5.58689 5.60263 5.63588 5.72317 5.75768 5.85111 6.05259 6.17215 6.19819 6.38439 6.69888 6.70695 6.80105 6.91350 7.03134 7.04926 7.28103 7.31645 7.50558 7.67783 7.98248 8.09787 8.32940 8.83072 9.49727 10.97614 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.002568 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.444112 B =10902.883221 C =11033.030256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.581 4.581 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.961 6.961 16 N -1.010 6.010 17 C 0.120 3.880 18 C -0.152 4.152 19 C 0.093 3.907 20 O -0.374 6.374 21 C 0.060 3.940 22 C 0.078 3.922 23 O -0.565 6.565 24 C -0.127 4.127 25 C 0.121 3.879 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.378 0.622 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -7.582 -22.050 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.951 6.951 15 O -0.951 6.951 16 N -0.847 5.847 17 C -0.005 4.005 18 C -0.191 4.191 19 C 0.035 3.965 20 O -0.293 6.293 21 C -0.017 4.017 22 C 0.000 4.000 23 O -0.370 6.370 24 C -0.166 4.166 25 C -0.005 4.005 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.224 0.776 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.943 -6.585 -21.470 22.995 hybrid contribution 0.958 -1.255 0.591 1.686 sum 5.901 -7.840 -20.880 23.071 Atomic orbital electron populations 1.22272 0.96901 1.00609 1.02346 1.17943 0.92847 0.92222 0.89115 1.22275 0.99693 0.97827 1.02349 1.20979 1.31604 1.12038 0.89381 0.92291 1.24950 0.94921 0.95004 0.98955 1.69812 1.36382 1.22583 1.23371 0.86480 0.78633 0.79603 0.82918 1.19865 1.20948 1.20951 1.30578 1.11222 1.12774 1.16914 1.05743 0.74672 0.75073 0.75352 1.93526 1.29419 1.86508 1.85690 1.93526 1.78103 1.37831 1.85671 1.58053 1.29346 1.47143 1.50135 1.21276 0.84082 1.01822 0.93361 1.22279 1.01786 0.99599 0.95445 1.22065 0.97218 0.96848 0.80361 1.87995 1.39862 1.83844 1.17604 1.22567 0.90146 0.98043 0.90944 1.22192 1.00354 0.82832 0.94609 1.86592 1.95977 1.22955 1.31476 1.21924 0.96177 1.03604 0.94896 1.21384 0.97437 0.88661 0.93015 0.88656 0.95344 0.94489 0.94493 0.95339 0.88654 0.92791 0.86474 0.86469 0.88299 0.91641 0.90800 0.90353 0.92113 0.92578 0.92006 0.92348 0.92817 0.77554 0.90268 0.90370 0.91486 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C -0.58 -11.36 5.12 37.16 0.19 -11.17 16 13 S 2.59 48.70 4.49 -107.50 -0.48 48.21 16 14 O -0.96 -20.19 14.21 -57.54 -0.82 -21.00 16 15 O -0.96 -20.31 14.20 -57.54 -0.82 -21.12 16 16 N -1.01 -14.45 3.23 -113.76 -0.37 -14.82 16 17 C 0.12 1.47 6.40 -3.93 -0.03 1.45 16 18 C -0.15 -1.77 5.68 -26.83 -0.15 -1.92 16 19 C 0.09 1.00 2.57 -26.69 -0.07 0.93 16 20 O -0.37 -4.33 9.95 -40.09 -0.40 -4.73 16 21 C 0.06 0.50 6.13 37.16 0.23 0.73 16 22 C 0.08 0.55 7.43 37.16 0.28 0.83 16 23 O -0.56 -5.06 13.62 -40.09 -0.55 -5.60 16 24 C -0.13 -1.43 5.73 -26.61 -0.15 -1.58 16 25 C 0.12 1.44 6.43 -3.71 -0.02 1.42 16 26 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 27 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 31 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.10 1.30 6.85 -51.93 -0.36 0.94 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.54 7.79 -51.92 -0.40 0.13 16 40 H 0.06 0.47 7.84 -51.93 -0.41 0.07 16 41 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 1.52 9.12 45.56 0.42 1.94 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -34.04 377.70 -9.16 -43.21 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.32 Total: 4.99 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 0.40 Total: -26.78 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.15 Total: -38.49 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -2.58 Total: -52.46 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.48 Total: 48.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.04 -9.16 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571106278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.015 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds