Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 H 1.07999 * 120.00196 * 120.00212 * 4 2 1 6 6 C 1.37879 * 119.99394 * 300.00080 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 13 13 S 1.81399 * 109.47162 * 60.00198 * 12 2 1 14 14 O 1.42097 * 110.54031 * 291.62403 * 13 12 2 15 15 O 1.42096 * 110.54122 * 68.37573 * 13 12 2 16 16 N 1.65601 * 104.44938 * 179.97438 * 13 12 2 17 17 C 1.46927 * 120.62977 * 269.71959 * 16 13 12 18 18 C 1.52757 * 109.00798 * 233.58163 * 17 16 13 19 19 C 1.53041 * 109.38637 * 305.59302 * 18 17 16 20 20 O 1.42900 * 109.45022 * 181.25270 * 19 18 17 21 21 C 1.42904 * 113.99925 * 89.93635 * 20 19 18 22 22 C 1.53000 * 109.47075 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.46914 * 64.99892 * 22 21 20 24 24 C 1.53033 * 109.54036 * 61.23590 * 19 18 17 25 25 C 1.46924 * 120.62980 * 89.99822 * 16 13 12 26 26 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 32 32 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46930 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 12 2 1 35 35 H 1.08998 * 109.59041 * 353.42113 * 17 16 13 36 36 H 1.09008 * 109.58390 * 113.84455 * 17 16 13 37 37 H 1.08993 * 109.56590 * 185.55392 * 18 17 16 38 38 H 1.09003 * 109.35725 * 65.49769 * 18 17 16 39 39 H 1.09009 * 109.45813 * 301.21953 * 19 18 17 40 40 H 1.08997 * 109.46970 * 299.99879 * 21 20 19 41 41 H 1.09006 * 109.47018 * 60.00079 * 21 20 19 42 42 H 1.08998 * 109.47425 * 184.99816 * 22 21 20 43 43 H 1.09001 * 109.47006 * 305.00241 * 22 21 20 44 44 H 0.96697 * 113.99941 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.50241 * 178.68630 * 24 19 18 46 46 H 1.09000 * 109.49880 * 58.58492 * 24 19 18 47 47 H 1.09003 * 109.58937 * 246.15681 * 25 16 13 48 48 H 1.09001 * 109.58543 * 6.43721 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1677 -1.5866 4.8165 12 6 2.0400 -0.7213 -1.2493 13 16 1.4354 0.1339 -2.7304 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4099 -2.8544 16 7 2.0541 -0.7400 -3.9936 17 6 3.3632 -0.4010 -4.5683 18 6 3.2099 -0.2086 -6.0759 19 6 2.5598 -1.4538 -6.6834 20 8 2.4424 -1.2874 -8.0978 21 6 3.5742 -1.7553 -8.8341 22 6 3.3395 -1.5286 -10.3289 23 8 3.2704 -0.1259 -10.5928 24 6 1.1692 -1.6531 -6.0763 25 6 1.3019 -1.8654 -4.5649 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7094 1.1618 3.4843 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 3.7316 0.5213 -4.1192 36 1 4.0675 -1.2104 -4.3757 37 1 4.1906 -0.0541 -6.5258 38 1 2.5803 0.6604 -6.2672 39 1 3.1774 -2.3265 -6.4705 40 1 4.4636 -1.2097 -8.5187 41 1 3.7152 -2.8197 -8.6461 42 1 4.1616 -1.9649 -10.8961 43 1 2.4027 -2.0007 -10.6252 44 1 3.1223 0.0924 -11.5231 45 1 0.6975 -2.5266 -6.5263 46 1 0.5589 -0.7705 -6.2674 47 1 1.8346 -2.7966 -4.3721 48 1 0.3116 -1.9105 -4.1118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571106278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -197.093688 kcal Electronic energy + Delta-G solvation = -28619.736035 eV Core-core repulsion = 24607.886877 eV Total energy + Delta-G solvation = -4011.849158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.22433 -38.33025 -38.18327 -38.10547 -37.07598 -36.82752 -33.62862 -32.66964 -32.12408 -30.10405 -28.30758 -27.69961 -27.25300 -24.97950 -24.46444 -23.23643 -21.61212 -21.28824 -19.67177 -18.97558 -18.51093 -17.98327 -17.72327 -17.15150 -16.93351 -16.67852 -16.08465 -15.90675 -15.71792 -15.34331 -15.22586 -14.99760 -14.68093 -14.43578 -14.43027 -14.07877 -13.85628 -13.80868 -13.54105 -13.28507 -13.00197 -12.94790 -12.89184 -12.75682 -12.51283 -12.49093 -12.26698 -12.13001 -12.11442 -11.95335 -11.92532 -11.80382 -11.57139 -11.53847 -11.31271 -10.93682 -10.62817 -10.42649 -10.40629 -9.95720 -8.02991 -6.21766 -0.64318 1.43194 1.46084 1.55755 1.79357 2.44273 2.66740 2.93453 3.18557 3.23791 3.44494 3.61290 3.85120 3.94429 4.07088 4.08451 4.21965 4.24639 4.27543 4.30674 4.38790 4.46156 4.57686 4.59718 4.69268 4.73974 4.77965 4.81684 4.85737 4.86435 4.86718 4.94611 4.99136 5.08050 5.15692 5.21460 5.29666 5.38412 5.49493 5.64769 5.68613 5.96478 6.11209 6.33785 6.34248 6.83482 6.93450 7.46610 8.97105 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.002568 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.444112 B =10902.883221 C =11033.030256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.514 4.514 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.582 4.582 13 S 2.606 3.394 14 O -0.989 6.989 15 O -0.991 6.991 16 N -1.004 6.004 17 C 0.114 3.886 18 C -0.150 4.150 19 C 0.094 3.906 20 O -0.398 6.398 21 C 0.049 3.951 22 C 0.074 3.926 23 O -0.596 6.596 24 C -0.126 4.126 25 C 0.113 3.887 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.261 0.739 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.395 0.605 45 H 0.101 0.899 46 H 0.049 0.951 47 H 0.106 0.894 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -10.307 -23.309 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.715 4.715 13 S 2.705 3.295 14 O -0.979 6.979 15 O -0.981 6.981 16 N -0.843 5.843 17 C -0.011 4.011 18 C -0.190 4.190 19 C 0.036 3.964 20 O -0.318 6.318 21 C -0.027 4.027 22 C -0.004 4.004 23 O -0.405 6.405 24 C -0.165 4.165 25 C -0.012 4.012 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.245 0.755 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.124 0.876 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.722 -9.311 -22.743 25.478 hybrid contribution 0.411 -0.400 0.856 1.031 sum 7.133 -9.711 -21.887 24.985 Atomic orbital electron populations 1.22204 0.97798 1.00540 1.01219 1.17939 0.92324 0.92099 0.91051 1.22208 0.99852 0.98508 1.01216 1.21319 1.31484 1.12224 0.90272 0.91726 1.25713 0.95231 0.95690 1.01789 1.69958 1.37316 1.23754 1.23775 0.85539 0.78019 0.78727 0.79529 1.18790 1.21039 1.21010 1.30487 1.12493 1.13336 1.15142 1.04980 0.73908 0.74757 0.75811 1.93482 1.31351 1.86890 1.86214 1.93481 1.78437 1.39974 1.86215 1.57697 1.30391 1.47519 1.48670 1.21537 0.83476 1.02753 0.93346 1.22270 1.02226 0.99186 0.95298 1.22073 0.96913 0.97169 0.80197 1.87976 1.41442 1.84415 1.17979 1.22873 0.89027 0.99494 0.91340 1.22363 1.01644 0.82097 0.94274 1.86535 1.96149 1.24348 1.33431 1.21918 0.96636 1.03316 0.94667 1.21682 0.97308 0.89077 0.93097 0.91145 0.95081 0.93945 0.94032 0.95098 0.91130 0.92959 0.84498 0.84383 0.89652 0.87805 0.89102 0.93493 0.89109 0.92876 0.89380 0.89480 0.92611 0.75534 0.88038 0.93242 0.87619 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.26 16 3 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 4 C -0.51 -26.61 8.01 25.60 0.21 -26.41 16 5 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 6 C 0.01 0.79 5.15 84.66 0.44 1.23 16 7 N -0.91 -50.65 9.35 21.45 0.20 -50.45 16 8 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C -0.58 -21.81 5.12 71.98 0.37 -21.45 16 13 S 2.61 96.59 4.49 -56.49 -0.25 96.34 16 14 O -0.99 -41.75 14.21 -127.65 -1.81 -43.57 16 15 O -0.99 -42.23 14.20 -127.65 -1.81 -44.04 16 16 N -1.00 -26.89 3.23 -513.83 -1.66 -28.55 16 17 C 0.11 2.53 6.40 86.22 0.55 3.08 16 18 C -0.15 -3.26 5.68 30.53 0.17 -3.09 16 19 C 0.09 1.77 2.57 30.62 0.08 1.85 16 20 O -0.40 -8.45 9.95 -144.34 -1.44 -9.89 16 21 C 0.05 0.69 6.13 71.98 0.44 1.13 16 22 C 0.07 0.87 7.43 71.98 0.53 1.41 16 23 O -0.60 -9.97 13.62 -144.34 -1.97 -11.94 16 24 C -0.13 -2.60 5.73 30.67 0.18 -2.42 16 25 C 0.11 2.42 6.43 86.36 0.56 2.97 16 26 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 27 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 31 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 32 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 33 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 34 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 35 H 0.09 2.15 6.85 -2.39 -0.02 2.13 16 36 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.09 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.18 7.79 -2.38 -0.02 1.16 16 40 H 0.05 0.77 7.84 -2.39 -0.02 0.75 16 41 H 0.09 0.75 8.09 -2.38 -0.02 0.73 16 42 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.40 2.77 9.12 -74.06 -0.68 2.10 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 2.15 6.86 -2.39 -0.02 2.13 16 Total: -1.00 -74.62 377.70 -1.83 -76.44 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.28 Total: 24.98 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 4.61 Total: -53.38 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.46 Total: -79.00 kcal Atomic # 8 Polarization: -102.40 SS G_CDS: -7.03 Total: -109.43 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 96.59 SS G_CDS: -0.25 Total: 96.34 kcal Total: -74.62 -1.83 -76.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571106278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.650 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds