Wall clock time and date at job start Tue Mar 31 2020 18:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46816 * 2 1 4 4 C 1.50699 * 109.47047 * 119.99863 * 2 1 3 5 5 H 1.07997 * 119.99387 * 125.40926 * 4 2 1 6 6 C 1.37876 * 120.00401 * 305.41522 * 4 2 1 7 7 N 1.31505 * 119.99971 * 150.78854 * 6 4 2 8 8 Si 1.86798 * 119.99769 * 330.79017 * 6 4 2 9 9 H 1.48496 * 109.47060 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47046 * 299.99906 * 8 6 4 11 11 H 1.48505 * 109.47054 * 59.99843 * 8 6 4 12 12 C 1.53000 * 109.46881 * 240.00418 * 2 1 3 13 13 S 1.81396 * 109.47540 * 60.00155 * 12 2 1 14 14 O 1.42106 * 110.54130 * 291.62371 * 13 12 2 15 15 O 1.42097 * 110.54341 * 68.36819 * 13 12 2 16 16 N 1.65602 * 104.45052 * 179.97438 * 13 12 2 17 17 C 1.46498 * 120.00005 * 64.99862 * 16 13 12 18 18 H 1.09005 * 109.47113 * 335.00057 * 17 16 13 19 19 C 1.53001 * 109.47124 * 94.99850 * 17 16 13 20 20 O 1.42899 * 109.47070 * 64.99963 * 19 17 16 21 21 C 1.52994 * 109.47073 * 215.00306 * 17 16 13 22 22 H 1.09006 * 109.51919 * 299.99435 * 21 17 16 23 23 C 1.53175 * 109.52403 * 179.87728 * 21 17 16 24 24 C 1.53171 * 109.04053 * 183.11059 * 23 21 17 25 25 C 1.53095 * 109.16342 * 56.97465 * 24 23 21 26 26 O 1.42908 * 109.41528 * 302.39591 * 25 24 23 27 27 C 1.42908 * 114.15186 * 61.12329 * 26 25 24 28 28 H 1.08995 * 109.47488 * 292.48046 * 1 2 3 29 29 H 1.09004 * 109.47145 * 52.48321 * 1 2 3 30 30 H 1.09004 * 109.47187 * 172.47878 * 1 2 3 31 31 H 1.08998 * 109.47057 * 183.42124 * 3 2 1 32 32 H 1.08997 * 109.47656 * 303.42513 * 3 2 1 33 33 H 1.09004 * 109.46823 * 63.42552 * 3 2 1 34 34 H 0.97010 * 120.00511 * 354.96195 * 7 6 4 35 35 H 1.09004 * 109.46826 * 180.02562 * 12 2 1 36 36 H 1.08993 * 109.47287 * 299.99438 * 12 2 1 37 37 H 0.96998 * 119.99430 * 245.00008 * 16 13 12 38 38 H 1.08999 * 109.47020 * 185.00059 * 19 17 16 39 39 H 1.08997 * 109.47131 * 305.00209 * 19 17 16 40 40 H 0.96691 * 114.00265 * 179.97438 * 20 19 17 41 41 H 1.09006 * 109.54277 * 302.97344 * 23 21 17 42 42 H 1.09005 * 109.54880 * 63.15351 * 23 21 17 43 43 H 1.08993 * 109.52775 * 176.88233 * 24 23 21 44 44 H 1.09002 * 109.52522 * 297.07402 * 24 23 21 45 45 H 1.09004 * 109.47945 * 62.37945 * 25 24 23 46 46 H 1.08997 * 109.48294 * 182.39819 * 25 24 23 47 47 H 1.09002 * 109.53399 * 178.92783 * 27 26 25 48 48 H 1.08999 * 109.42804 * 58.88984 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7232 -1.5348 1.1337 6 6 1.6098 -0.3080 2.4797 7 7 1.5397 -1.1791 3.4623 8 14 1.1368 1.4746 2.7763 9 1 0.7201 1.6474 4.1910 10 1 2.3025 2.3498 2.4926 11 1 0.0112 1.8437 1.8806 12 6 2.0399 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0541 -0.7399 -3.9937 17 6 1.6254 -2.1245 -4.2061 18 1 1.2830 -2.5478 -3.2617 19 6 0.4822 -2.1542 -5.2225 20 8 0.9621 -1.7080 -6.4924 21 6 2.8013 -2.9467 -4.7369 22 1 3.1443 -2.5242 -5.6814 23 6 2.3552 -4.3955 -4.9565 24 6 3.5590 -5.2253 -5.4133 25 6 4.6726 -5.1122 -4.3689 26 8 5.0187 -3.7372 -4.1904 27 6 3.9448 -2.9204 -3.7194 28 1 -0.3634 0.3929 0.9495 29 1 -0.3634 0.6259 -0.8151 30 1 -0.3634 -1.0189 -0.1345 31 1 3.1282 1.4432 -0.0613 32 1 1.6274 1.9739 -0.8576 33 1 1.7275 1.9383 0.9191 34 1 1.7146 -2.1179 3.2917 35 1 3.1300 -0.7216 -1.2491 36 1 1.6767 -1.7488 -1.2493 37 1 2.7004 -0.3348 -4.5929 38 1 0.1040 -3.1724 -5.3142 39 1 -0.3201 -1.4975 -4.8862 40 1 0.2894 -1.7013 -7.1868 41 1 1.9649 -4.8023 -4.0236 42 1 1.5786 -4.4261 -5.7208 43 1 3.2631 -6.2690 -5.5187 44 1 3.9184 -4.8491 -6.3711 45 1 4.3261 -5.5258 -3.4217 46 1 5.5476 -5.6662 -4.7089 47 1 4.2947 -1.8959 -3.5923 48 1 3.5894 -3.3046 -2.7632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573386535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:04 Heat of formation + Delta-G solvation = -199.094254 kcal Electronic energy + Delta-G solvation = -29745.014636 eV Core-core repulsion = 25733.078727 eV Total energy + Delta-G solvation = -4011.935909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73669 -38.56338 -38.43482 -38.05710 -36.95694 -36.08800 -34.26957 -34.11350 -31.89382 -29.16837 -28.85232 -28.14065 -26.61286 -26.04278 -24.62498 -22.46739 -21.76328 -21.11298 -20.18802 -19.08977 -18.72428 -18.10692 -17.74676 -17.14208 -17.01993 -16.92388 -16.53953 -16.23938 -15.75194 -15.46985 -15.22798 -15.10038 -14.93941 -14.69039 -14.53478 -14.17489 -14.01491 -13.84187 -13.72260 -13.50578 -13.18187 -13.09089 -12.99000 -12.79036 -12.74301 -12.63672 -12.30597 -12.10034 -12.01041 -11.97948 -11.78528 -11.76439 -11.53537 -11.25725 -11.00494 -10.83524 -10.79812 -10.59370 -10.30041 -10.21528 -8.75078 -6.32140 -0.70954 1.42009 1.45529 1.68140 1.77558 2.43286 2.73316 2.91368 2.94611 3.22507 3.36111 3.54354 3.72216 3.78972 3.85879 3.98602 4.02289 4.13501 4.20713 4.27520 4.33974 4.38574 4.43796 4.51893 4.55228 4.59574 4.69192 4.70399 4.73027 4.80957 4.82691 4.85582 4.95287 4.95970 5.09292 5.12880 5.18888 5.27402 5.39606 5.44516 5.54830 6.00025 6.04860 6.08717 6.24871 6.59496 6.93567 7.35819 8.59023 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.004153 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.213627 B = 6740.228795 C = 7796.176094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.050 3.950 3 C -0.187 4.187 4 C -0.597 4.597 5 H 0.038 0.962 6 C 0.003 3.997 7 N -0.919 5.919 8 Si 1.059 2.941 9 H -0.303 1.303 10 H -0.265 1.265 11 H -0.248 1.248 12 C -0.584 4.584 13 S 2.614 3.386 14 O -0.980 6.980 15 O -0.987 6.987 16 N -1.103 6.103 17 C 0.152 3.848 18 H 0.102 0.898 19 C 0.058 3.942 20 O -0.577 6.577 21 C -0.110 4.110 22 H 0.091 0.909 23 C -0.120 4.120 24 C -0.148 4.148 25 C 0.047 3.953 26 O -0.402 6.402 27 C 0.053 3.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.261 0.739 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.424 0.576 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.394 0.606 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -7.729 -21.334 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.047 3.953 3 C -0.244 4.244 4 C -0.635 4.635 5 H 0.056 0.944 6 C -0.199 4.199 7 N -0.552 5.552 8 Si 0.886 3.114 9 H -0.231 1.231 10 H -0.191 1.191 11 H -0.173 1.173 12 C -0.716 4.716 13 S 2.710 3.290 14 O -0.969 6.969 15 O -0.978 6.978 16 N -0.863 5.863 17 C 0.044 3.956 18 H 0.120 0.880 19 C -0.021 4.021 20 O -0.385 6.385 21 C -0.130 4.130 22 H 0.109 0.891 23 C -0.158 4.158 24 C -0.185 4.185 25 C -0.029 4.029 26 O -0.321 6.321 27 C -0.024 4.024 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.260 0.740 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.243 0.757 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.010 -5.869 -19.865 20.714 hybrid contribution 0.540 -1.715 -0.796 1.966 sum 0.530 -7.584 -20.661 22.015 Atomic orbital electron populations 1.22618 0.96853 1.01996 1.01555 1.18151 0.92609 0.92010 0.92533 1.22813 1.02767 0.97832 1.00946 1.21736 1.31276 1.18805 0.91692 0.94418 1.26673 0.93375 1.07029 0.92845 1.70959 1.43667 1.03669 1.36918 0.84125 0.78652 0.73664 0.74938 1.23103 1.19129 1.17338 1.30432 1.12639 1.13388 1.15127 1.04798 0.74459 0.74218 0.75547 1.93526 1.31001 1.86619 1.85800 1.93525 1.78392 1.39770 1.86090 1.55419 1.61146 1.24239 1.45518 1.21104 0.94802 0.80590 0.99082 0.88041 1.22716 0.95148 0.99910 0.84347 1.86408 1.41866 1.89984 1.20205 1.21859 0.94187 0.96598 1.00372 0.89077 1.21727 0.98579 0.92693 1.02778 1.22127 0.95448 1.01661 0.99286 1.22834 0.99507 0.82093 0.98505 1.87916 1.36399 1.20578 1.87229 1.22779 0.87929 0.95821 0.95842 0.92665 0.92922 0.92175 0.91379 0.92402 0.93388 0.92940 0.84621 0.84715 0.73995 0.90072 0.93339 0.75656 0.91037 0.89526 0.88863 0.91248 0.92966 0.87815 0.88934 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.52 7.38 71.98 0.53 -6.99 16 2 C 0.05 2.21 0.52 -52.93 -0.03 2.18 16 3 C -0.19 -8.07 7.33 71.98 0.53 -7.55 16 4 C -0.60 -31.69 8.42 25.60 0.22 -31.47 16 5 H 0.04 2.14 7.99 -2.91 -0.02 2.11 16 6 C 0.00 0.18 5.05 84.66 0.43 0.60 16 7 N -0.92 -55.09 13.69 21.45 0.29 -54.80 16 8 Si 1.06 50.05 23.47 68.60 1.61 51.66 16 9 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 10 H -0.26 -11.66 6.72 99.48 0.67 -10.99 16 11 H -0.25 -10.63 5.79 99.48 0.58 -10.06 16 12 C -0.58 -20.35 4.90 71.98 0.35 -20.00 16 13 S 2.61 84.15 4.41 -56.49 -0.25 83.90 16 14 O -0.98 -35.11 14.84 -127.65 -1.89 -37.01 16 15 O -0.99 -36.94 15.77 -127.65 -2.01 -38.96 16 16 N -1.10 -26.20 4.60 -169.39 -0.78 -26.97 16 17 C 0.15 3.03 2.06 44.99 0.09 3.12 16 18 H 0.10 1.90 7.15 -2.38 -0.02 1.89 16 19 C 0.06 1.04 6.38 71.98 0.46 1.50 16 20 O -0.58 -9.58 12.73 -148.98 -1.90 -11.47 16 21 C -0.11 -1.97 1.88 -10.71 -0.02 -1.99 16 22 H 0.09 1.79 7.56 -2.38 -0.02 1.77 16 23 C -0.12 -1.67 4.87 30.71 0.15 -1.52 16 24 C -0.15 -1.93 6.14 30.68 0.19 -1.74 16 25 C 0.05 0.78 6.85 72.01 0.49 1.27 16 26 O -0.40 -9.28 10.76 -148.98 -1.60 -10.89 16 27 C 0.05 1.13 5.94 72.01 0.43 1.56 16 28 H 0.05 2.50 4.47 -2.39 -0.01 2.49 16 29 H 0.05 2.11 6.02 -2.38 -0.01 2.10 16 30 H 0.06 2.49 8.13 -2.38 -0.02 2.47 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.06 2.33 5.72 -2.39 -0.01 2.32 16 33 H 0.05 2.10 2.28 -2.38 -0.01 2.10 16 34 H 0.26 15.63 8.73 -92.70 -0.81 14.82 16 35 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 36 H 0.13 4.20 7.44 -2.39 -0.02 4.18 16 37 H 0.42 9.13 8.80 -96.75 -0.85 8.28 16 38 H 0.08 1.01 6.79 -2.39 -0.02 0.99 16 39 H 0.05 1.05 7.37 -2.39 -0.02 1.04 16 40 H 0.39 3.31 9.12 -74.06 -0.68 2.64 16 41 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 42 H 0.09 0.99 6.74 -2.38 -0.02 0.98 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.99 7.69 -2.39 -0.02 1.98 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.74 364.72 -3.46 -75.21 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.75 Total: 30.36 kcal Atomic # 6 Polarization: -64.84 SS G_CDS: 3.82 Total: -61.03 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -0.49 Total: -81.78 kcal Atomic # 8 Polarization: -90.92 SS G_CDS: -7.41 Total: -98.32 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.61 Total: 51.66 kcal Atomic # 16 Polarization: 84.15 SS G_CDS: -0.25 Total: 83.90 kcal Total: -71.74 -3.46 -75.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573386535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.888 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds