Wall clock time and date at job start Tue Mar 31 2020 18:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.50696 * 109.47182 * 239.99996 * 2 1 3 5 5 H 1.07996 * 120.00046 * 239.99951 * 4 2 1 6 6 C 1.37878 * 120.00181 * 60.00157 * 4 2 1 7 7 N 1.31520 * 120.00004 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00383 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46710 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47299 * 119.99530 * 8 6 4 11 11 H 1.48498 * 109.47104 * 239.99832 * 8 6 4 12 12 C 1.53004 * 109.46957 * 119.99814 * 2 1 3 13 13 S 1.81396 * 109.47274 * 299.99834 * 12 2 1 14 14 O 1.42101 * 110.54066 * 68.37751 * 13 12 2 15 15 O 1.42099 * 110.54653 * 291.62502 * 13 12 2 16 16 N 1.65603 * 104.44797 * 179.97438 * 13 12 2 17 17 C 1.46493 * 119.99749 * 65.00490 * 16 13 12 18 18 C 1.53005 * 109.47149 * 164.99798 * 17 16 13 19 19 H 1.09000 * 109.47006 * 55.00134 * 18 17 16 20 20 C 1.52999 * 109.47138 * 294.99749 * 18 17 16 21 21 O 1.42903 * 109.46939 * 64.99671 * 20 18 17 22 22 C 1.53006 * 109.47069 * 174.99889 * 18 17 16 23 23 H 1.08995 * 111.01892 * 55.77621 * 22 18 17 24 24 C 1.55305 * 111.12200 * 180.02562 * 22 18 17 25 25 C 1.54382 * 102.43395 * 152.15163 * 24 22 18 26 26 O 1.43232 * 107.59109 * 338.54226 * 25 24 22 27 27 C 1.43649 * 109.97368 * 358.28680 * 26 25 24 28 28 H 1.09006 * 109.47135 * 300.00086 * 1 2 3 29 29 H 1.08997 * 109.47013 * 59.99893 * 1 2 3 30 30 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46919 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47265 * 299.99953 * 3 2 1 33 33 H 1.09006 * 109.47187 * 59.99946 * 3 2 1 34 34 H 0.96989 * 120.00200 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46492 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.46605 * 60.00320 * 12 2 1 37 37 H 0.96998 * 120.00219 * 244.99853 * 16 13 12 38 38 H 1.09000 * 109.47606 * 44.99557 * 17 16 13 39 39 H 1.09002 * 109.47429 * 284.99448 * 17 16 13 40 40 H 1.08991 * 109.47115 * 184.99726 * 20 18 17 41 41 H 1.09006 * 109.47128 * 305.00225 * 20 18 17 42 42 H 0.96700 * 113.99890 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.85041 * 33.86009 * 24 22 18 44 44 H 1.09001 * 110.84389 * 270.44146 * 24 22 18 45 45 H 1.09009 * 109.82643 * 98.05629 * 25 24 22 46 46 H 1.08999 * 109.83123 * 218.93188 * 25 24 22 47 47 H 1.08999 * 110.31137 * 143.34271 * 27 26 25 48 48 H 1.09000 * 110.31061 * 265.41699 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0530 -0.7408 3.9936 17 6 3.5013 -0.7981 4.2060 18 6 3.7902 -1.3346 5.6095 19 1 3.2934 -2.2959 5.7404 20 6 3.2672 -0.3441 6.6517 21 8 1.8431 -0.2662 6.5624 22 6 5.2995 -1.5122 5.7869 23 1 5.8288 -0.5804 5.5880 24 6 5.6364 -2.0571 7.2017 25 6 6.9573 -2.8183 6.9588 26 8 7.0272 -3.1295 5.5625 27 6 5.8418 -2.6660 4.8966 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7082 1.1609 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2492 37 1 1.4558 -1.2151 4.5930 38 1 3.9232 0.2019 4.1053 39 1 3.9514 -1.4586 3.4648 40 1 3.5508 -0.6819 7.6484 41 1 3.6973 0.6401 6.4655 42 1 1.4422 0.3451 7.1953 43 1 4.8573 -2.7340 7.5524 44 1 5.7839 -1.2394 7.9072 45 1 7.8029 -2.1908 7.2406 46 1 6.9676 -3.7373 7.5449 47 1 6.0877 -2.2926 3.9025 48 1 5.1080 -3.4691 4.8275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579127627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:23 Heat of formation + Delta-G solvation = -205.786879 kcal Electronic energy + Delta-G solvation = -28831.628031 eV Core-core repulsion = 24819.401909 eV Total energy + Delta-G solvation = -4012.226123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68374 -38.50825 -38.10512 -37.99759 -36.81590 -36.13996 -34.20511 -33.61897 -31.04283 -29.13005 -28.27071 -27.68230 -27.25130 -26.40692 -23.44817 -22.81598 -21.50871 -21.14344 -20.02782 -18.73140 -18.16263 -17.89751 -17.69840 -17.12299 -16.93468 -16.68665 -16.51276 -16.35158 -15.70993 -15.41080 -15.03796 -14.87509 -14.63591 -14.41534 -14.36499 -14.04698 -13.99422 -13.77534 -13.50055 -13.00204 -12.96668 -12.89394 -12.78710 -12.73156 -12.48874 -12.38203 -12.31826 -12.16844 -12.12107 -11.92079 -11.87670 -11.64553 -11.55867 -11.47704 -11.33401 -10.80027 -10.63372 -10.44518 -10.41548 -10.12392 -8.02440 -6.21001 -0.52400 1.43207 1.46199 1.55864 2.01384 2.44740 2.93184 2.96434 3.14161 3.19862 3.39824 3.56659 3.81215 3.88849 4.05622 4.07417 4.19124 4.22551 4.29446 4.34382 4.45657 4.53672 4.59341 4.61720 4.68809 4.79826 4.84031 4.87127 4.87911 4.90447 4.94332 4.98271 5.01785 5.08609 5.10683 5.19292 5.36659 5.39702 5.51888 5.65517 5.98078 6.08723 6.12535 6.32427 6.35327 6.84165 6.98020 7.47306 8.97623 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003351 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.985429 B = 8352.629169 C = 9843.563282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.591 4.591 13 S 2.617 3.383 14 O -0.997 6.997 15 O -0.994 6.994 16 N -1.099 6.099 17 C 0.108 3.892 18 C -0.074 4.074 19 H 0.095 0.905 20 C 0.078 3.922 21 O -0.588 6.588 22 C -0.110 4.110 23 H 0.098 0.902 24 C -0.144 4.144 25 C 0.043 3.957 26 O -0.411 6.411 27 C 0.047 3.953 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.425 0.575 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.393 0.607 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.524 -6.079 22.378 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.216 4.216 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.723 4.723 13 S 2.714 3.286 14 O -0.988 6.988 15 O -0.983 6.983 16 N -0.862 5.862 17 C -0.018 4.018 18 C -0.094 4.094 19 H 0.113 0.887 20 C 0.001 3.999 21 O -0.397 6.397 22 C -0.130 4.130 23 H 0.117 0.883 24 C -0.182 4.182 25 C -0.033 4.033 26 O -0.331 6.331 27 C -0.029 4.029 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.289 -5.627 21.681 24.249 hybrid contribution -0.067 -0.332 -0.692 0.770 sum 9.223 -5.959 20.989 23.688 Atomic orbital electron populations 1.22215 0.97928 1.00433 1.01290 1.17913 0.92219 0.92187 0.90972 1.22193 0.99818 0.98346 1.01286 1.21339 1.31512 1.12226 0.90419 0.91857 1.25690 0.95216 0.95674 1.01703 1.69954 1.37252 1.23776 1.23750 0.85556 0.78021 0.78741 0.79603 1.18930 1.21018 1.20922 1.30502 1.12529 1.13397 1.15850 1.04540 0.73410 0.74920 0.75718 1.93491 1.31820 1.87127 1.86327 1.93481 1.78485 1.40311 1.86056 1.55177 1.14923 1.70856 1.45217 1.21585 0.79562 1.02099 0.98580 1.21254 0.94692 1.00456 0.93046 0.88710 1.22284 0.81128 0.98186 0.98339 1.86377 1.20469 1.68894 1.63915 1.22841 0.94131 0.99942 0.96085 0.88328 1.23203 0.97260 1.01065 0.96646 1.23292 0.98403 0.99866 0.81789 1.88396 1.41457 1.81729 1.21559 1.23697 0.86963 0.95505 0.96758 0.94967 0.91055 0.94204 0.94045 0.91150 0.94906 0.92963 0.84561 0.84678 0.73759 0.91011 0.90287 0.91016 0.93588 0.75688 0.89490 0.88042 0.90601 0.90777 0.89294 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.15 7.77 71.98 0.56 -7.59 16 2 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 3 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 4 C -0.52 -27.02 8.01 25.60 0.21 -26.81 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.87 5.15 84.65 0.44 1.31 16 7 N -0.91 -50.73 9.35 21.45 0.20 -50.53 16 8 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C -0.59 -22.45 5.01 71.98 0.36 -22.09 16 13 S 2.62 95.96 4.49 -56.49 -0.25 95.71 16 14 O -1.00 -42.62 15.70 -127.65 -2.00 -44.62 16 15 O -0.99 -41.38 15.12 -127.65 -1.93 -43.31 16 16 N -1.10 -28.65 4.95 -187.49 -0.93 -29.58 16 17 C 0.11 2.21 5.46 86.38 0.47 2.68 16 18 C -0.07 -1.06 1.79 -10.79 -0.02 -1.08 16 19 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 20 C 0.08 1.05 6.29 71.98 0.45 1.50 16 21 O -0.59 -10.06 11.20 -148.98 -1.67 -11.73 16 22 C -0.11 -1.32 2.63 -9.14 -0.02 -1.35 16 23 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 24 C -0.14 -1.25 5.29 31.86 0.17 -1.08 16 25 C 0.04 0.51 7.80 72.45 0.56 1.08 16 26 O -0.41 -7.81 11.36 -148.98 -1.69 -9.50 16 27 C 0.05 0.72 6.54 72.84 0.48 1.20 16 28 H 0.03 1.56 5.46 -2.38 -0.01 1.55 16 29 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 33 H 0.03 1.57 5.46 -2.38 -0.01 1.56 16 34 H 0.26 13.91 8.31 -92.72 -0.77 13.14 16 35 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 36 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 37 H 0.42 10.27 7.19 -96.74 -0.70 9.58 16 38 H 0.07 1.59 7.70 -2.39 -0.02 1.57 16 39 H 0.08 1.37 7.39 -2.39 -0.02 1.35 16 40 H 0.07 0.60 7.09 -2.39 -0.02 0.58 16 41 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.39 3.94 9.12 -74.06 -0.68 3.26 16 43 H 0.09 0.66 8.03 -2.39 -0.02 0.64 16 44 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 45 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 1.36 8.03 -2.39 -0.02 1.34 16 48 H 0.07 0.99 7.99 -2.39 -0.02 0.97 16 Total: -1.00 -72.69 375.99 -2.47 -75.15 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.40 Total: 30.27 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 4.18 Total: -56.28 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.73 Total: -80.11 kcal Atomic # 8 Polarization: -101.87 SS G_CDS: -7.29 Total: -109.16 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 95.96 SS G_CDS: -0.25 Total: 95.71 kcal Total: -72.69 -2.47 -75.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579127627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.633 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds