Wall clock time and date at job start Tue Mar 31 2020 18:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53002 * 109.47223 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.45020 * 299.96669 * 4 3 2 6 6 C 1.53037 * 109.45877 * 179.97438 * 4 3 2 7 7 C 1.53196 * 109.31040 * 178.61574 * 6 4 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 4 9 9 S 1.65606 * 120.63323 * 126.37256 * 8 7 6 10 10 O 1.42097 * 104.27954 * 206.06759 * 9 8 7 11 11 O 1.42101 * 104.27316 * 333.92429 * 9 8 7 12 12 C 1.81398 * 104.44914 * 89.99399 * 9 8 7 13 13 C 1.52998 * 109.46818 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.47379 * 299.99855 * 13 12 9 15 15 C 1.53003 * 109.47300 * 59.99981 * 13 12 9 16 16 C 1.50707 * 109.47076 * 180.02562 * 13 12 9 17 17 H 1.08001 * 119.99628 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00013 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99909 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99921 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47493 * 59.99927 * 20 18 16 22 22 H 1.48502 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47131 * 299.99535 * 20 18 16 24 24 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 25 25 C 1.53040 * 109.45685 * 59.92642 * 4 3 2 26 26 H 1.08998 * 109.47391 * 300.00667 * 1 2 3 27 27 H 1.09002 * 109.46559 * 60.00531 * 1 2 3 28 28 H 1.09003 * 109.46694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47264 * 59.99682 * 3 2 1 30 30 H 1.09000 * 109.46604 * 299.99521 * 3 2 1 31 31 H 0.96701 * 114.00198 * 60.02512 * 5 4 3 32 32 H 1.08999 * 109.50017 * 58.65982 * 6 4 3 33 33 H 1.09004 * 109.49998 * 298.56579 * 6 4 3 34 34 H 1.08998 * 109.58545 * 174.42116 * 7 6 4 35 35 H 1.08999 * 109.58713 * 294.84595 * 7 6 4 36 36 H 1.08994 * 109.47207 * 300.00207 * 12 9 8 37 37 H 1.08997 * 109.47305 * 60.00555 * 12 9 8 38 38 H 1.08997 * 109.46725 * 60.00101 * 14 13 12 39 39 H 1.08994 * 109.47317 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.46771 * 300.00678 * 14 13 12 41 41 H 1.09004 * 109.46786 * 60.00372 * 15 13 12 42 42 H 1.09001 * 109.47040 * 179.97438 * 15 13 12 43 43 H 1.08997 * 109.47211 * 300.00148 * 15 13 12 44 44 H 0.97002 * 119.99688 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58617 * 173.39731 * 24 8 7 46 46 H 1.08995 * 109.59240 * 293.82509 * 24 8 7 47 47 H 1.09003 * 109.49938 * 61.44039 * 25 4 3 48 48 H 1.08991 * 109.50504 * 301.33686 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9562 0.4764 1.1682 6 6 4.1577 2.5828 0.0000 7 6 5.6841 2.4581 0.0356 8 7 6.1150 1.6054 -1.0806 9 16 7.2589 2.1353 -2.1545 10 8 6.9810 1.4139 -3.3468 11 8 7.1494 3.5515 -2.1127 12 6 8.8361 1.5973 -1.4380 13 6 9.9852 2.0335 -2.3491 14 6 9.8099 1.3993 -3.7304 15 6 9.9795 3.5576 -2.4833 16 6 11.2956 1.5860 -1.7542 17 1 11.3075 1.0451 -0.8195 18 6 12.4792 1.8682 -2.4026 19 7 12.4647 2.5274 -3.5406 20 14 14.1034 1.3142 -1.6649 21 1 14.1093 -0.1650 -1.5351 22 1 15.2188 1.7374 -2.5492 23 1 14.2735 1.9294 -0.3241 24 6 5.5116 0.2737 -1.2261 25 6 3.9871 0.4233 -1.2478 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.5991 -0.4198 1.2347 32 1 3.8170 3.1331 0.8771 33 1 3.8570 3.1145 -0.9029 34 1 6.1339 3.4459 -0.0645 35 1 5.9921 2.0081 0.9793 36 1 8.9613 2.0494 -0.4542 37 1 8.8401 0.5116 -1.3421 38 1 8.8622 1.7225 -4.1609 39 1 10.6288 1.7097 -4.3794 40 1 9.8140 0.3135 -3.6348 41 1 10.1045 4.0094 -1.4992 42 1 10.7984 3.8684 -3.1320 43 1 9.0317 3.8809 -2.9138 44 1 13.2974 2.7256 -3.9969 45 1 5.8475 -0.1798 -2.1586 46 1 5.8055 -0.3545 -0.3852 47 1 3.6882 0.9756 -2.1387 48 1 3.5252 -0.5638 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584541168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:50 Heat of formation + Delta-G solvation = -168.993663 kcal Electronic energy + Delta-G solvation = -29221.954851 eV Core-core repulsion = 25211.324202 eV Total energy + Delta-G solvation = -4010.630649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88637 -37.66979 -36.58438 -36.24468 -35.60360 -35.18276 -31.93278 -31.63615 -31.15665 -28.12398 -26.61685 -26.00501 -25.69647 -25.20507 -23.53412 -22.68668 -20.42854 -19.42082 -18.41093 -17.46354 -16.91872 -16.74509 -16.19397 -15.96682 -15.72377 -15.34055 -15.28457 -14.76762 -14.51610 -14.32924 -14.20004 -13.74905 -13.36975 -13.07593 -12.96706 -12.61401 -12.48009 -12.31145 -12.11521 -12.00265 -11.95558 -11.75756 -11.40333 -11.25265 -11.13860 -11.03472 -10.97449 -10.90305 -10.68018 -10.55358 -10.36372 -10.24621 -10.10059 -10.07371 -9.97425 -9.62922 -9.52887 -8.87042 -8.57295 -8.38075 -6.01438 -4.13356 0.87503 3.12840 3.28517 3.30281 3.33742 3.35679 4.00683 4.35507 4.43706 4.46376 4.57535 4.64435 4.76656 4.89730 4.94016 4.99555 5.08976 5.11376 5.23635 5.25369 5.27148 5.32833 5.50750 5.60784 5.66780 5.69854 5.77279 5.78989 5.89294 5.98078 6.16809 6.27822 6.41933 6.69291 6.73258 6.77037 6.82060 6.92884 7.06472 7.33502 7.52461 7.52567 7.69643 7.99914 8.11666 8.35288 8.84988 9.51863 10.99835 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.002893 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.858984 B = 9676.248368 C = 9870.000069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.034 3.966 4 C 0.143 3.857 5 O -0.550 6.550 6 C -0.117 4.117 7 C 0.125 3.875 8 N -1.009 6.009 9 S 2.593 3.407 10 O -0.963 6.963 11 O -0.963 6.963 12 C -0.582 4.582 13 C 0.082 3.918 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.502 4.502 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.123 3.877 25 C -0.153 4.153 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.380 0.620 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 -3.614 7.865 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.043 4.043 4 C 0.102 3.898 5 O -0.356 6.356 6 C -0.156 4.156 7 C -0.001 4.001 8 N -0.845 5.845 9 S 2.692 3.308 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.715 4.715 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.541 4.541 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.523 5.523 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.002 4.002 25 C -0.192 4.192 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.997 -2.665 7.029 22.302 hybrid contribution 0.576 -0.940 0.832 1.381 sum -20.421 -3.605 7.861 22.177 Atomic orbital electron populations 1.22742 0.80726 1.02828 1.00027 1.87784 1.19992 1.27767 1.95454 1.23353 0.94745 0.85140 1.01045 1.21124 0.89501 0.93243 0.85933 1.86497 1.74648 1.31527 1.42949 1.21824 0.96661 0.93846 1.03270 1.21267 0.93821 0.95178 0.89791 1.57971 1.56689 1.25113 1.44707 1.05678 0.76201 0.74550 0.74324 1.93520 1.83938 1.74309 1.43593 1.93519 1.86190 1.29309 1.86367 1.30568 1.18004 1.10913 1.12033 1.17926 0.90675 0.92994 0.90441 1.22271 1.01108 0.99359 0.99368 1.22274 1.01502 0.96790 1.01555 1.20919 0.89498 1.36358 1.07341 0.92371 1.24941 0.99035 0.94893 0.94896 1.69797 1.27073 1.39699 1.15685 0.86593 0.82937 0.79044 0.79023 1.20284 1.21195 1.20274 1.21306 0.92469 0.83669 1.02805 1.22469 0.96743 1.01843 0.98169 0.94074 0.94016 0.89518 0.92429 0.92424 0.77216 0.90077 0.89979 0.88670 0.90667 0.86459 0.86481 0.95387 0.88678 0.94505 0.94495 0.88676 0.95369 0.92708 0.88794 0.91115 0.90678 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.38 9.50 -44.85 -0.43 -3.81 16 3 C 0.03 0.29 5.06 37.16 0.19 0.48 16 4 C 0.14 1.42 0.79 -90.58 -0.07 1.35 16 5 O -0.55 -5.56 11.70 -44.85 -0.52 -6.09 16 6 C -0.12 -1.24 5.11 -26.61 -0.14 -1.37 16 7 C 0.12 1.59 6.19 -3.71 -0.02 1.57 16 8 N -1.01 -14.72 3.22 -113.52 -0.37 -15.09 16 9 S 2.59 48.91 4.49 -107.50 -0.48 48.42 16 10 O -0.96 -20.23 14.21 -57.54 -0.82 -21.05 16 11 O -0.96 -20.14 14.21 -57.54 -0.82 -20.96 16 12 C -0.58 -11.63 5.12 37.16 0.19 -11.44 16 13 C 0.08 2.01 0.52 -155.65 -0.08 1.93 16 14 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 15 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 16 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 20 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.12 1.56 6.19 -3.71 -0.02 1.53 16 25 C -0.15 -1.65 4.95 -26.61 -0.13 -1.78 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.38 2.97 8.57 45.56 0.39 3.36 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.25 6.86 -51.93 -0.36 0.90 16 35 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 36 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 37 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 39 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 43 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.09 1.26 6.86 -51.93 -0.36 0.90 16 46 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.80 7.64 -51.93 -0.40 0.41 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -32.18 373.55 -8.41 -40.60 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.34 Total: 6.33 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 1.23 Total: -25.97 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.15 Total: -38.92 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -2.59 Total: -51.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.48 Total: 48.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.18 -8.41 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584541168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.396 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds