Wall clock time and date at job start Tue Mar 31 2020 18:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53002 * 109.47223 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.45020 * 299.96669 * 4 3 2 6 6 C 1.53037 * 109.45877 * 179.97438 * 4 3 2 7 7 C 1.53196 * 109.31040 * 178.61574 * 6 4 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 4 9 9 S 1.65606 * 120.63323 * 126.37256 * 8 7 6 10 10 O 1.42097 * 104.27954 * 206.06759 * 9 8 7 11 11 O 1.42101 * 104.27316 * 333.92429 * 9 8 7 12 12 C 1.81398 * 104.44914 * 89.99399 * 9 8 7 13 13 C 1.52998 * 109.46818 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.47379 * 299.99855 * 13 12 9 15 15 C 1.53003 * 109.47300 * 59.99981 * 13 12 9 16 16 C 1.50707 * 109.47076 * 180.02562 * 13 12 9 17 17 H 1.08001 * 119.99628 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00013 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99909 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99921 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47493 * 59.99927 * 20 18 16 22 22 H 1.48502 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47131 * 299.99535 * 20 18 16 24 24 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 25 25 C 1.53040 * 109.45685 * 59.92642 * 4 3 2 26 26 H 1.08998 * 109.47391 * 300.00667 * 1 2 3 27 27 H 1.09002 * 109.46559 * 60.00531 * 1 2 3 28 28 H 1.09003 * 109.46694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47264 * 59.99682 * 3 2 1 30 30 H 1.09000 * 109.46604 * 299.99521 * 3 2 1 31 31 H 0.96701 * 114.00198 * 60.02512 * 5 4 3 32 32 H 1.08999 * 109.50017 * 58.65982 * 6 4 3 33 33 H 1.09004 * 109.49998 * 298.56579 * 6 4 3 34 34 H 1.08998 * 109.58545 * 174.42116 * 7 6 4 35 35 H 1.08999 * 109.58713 * 294.84595 * 7 6 4 36 36 H 1.08994 * 109.47207 * 300.00207 * 12 9 8 37 37 H 1.08997 * 109.47305 * 60.00555 * 12 9 8 38 38 H 1.08997 * 109.46725 * 60.00101 * 14 13 12 39 39 H 1.08994 * 109.47317 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.46771 * 300.00678 * 14 13 12 41 41 H 1.09004 * 109.46786 * 60.00372 * 15 13 12 42 42 H 1.09001 * 109.47040 * 179.97438 * 15 13 12 43 43 H 1.08997 * 109.47211 * 300.00148 * 15 13 12 44 44 H 0.97002 * 119.99688 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58617 * 173.39731 * 24 8 7 46 46 H 1.08995 * 109.59240 * 293.82509 * 24 8 7 47 47 H 1.09003 * 109.49938 * 61.44039 * 25 4 3 48 48 H 1.08991 * 109.50504 * 301.33686 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9562 0.4764 1.1682 6 6 4.1577 2.5828 0.0000 7 6 5.6841 2.4581 0.0356 8 7 6.1150 1.6054 -1.0806 9 16 7.2589 2.1353 -2.1545 10 8 6.9810 1.4139 -3.3468 11 8 7.1494 3.5515 -2.1127 12 6 8.8361 1.5973 -1.4380 13 6 9.9852 2.0335 -2.3491 14 6 9.8099 1.3993 -3.7304 15 6 9.9795 3.5576 -2.4833 16 6 11.2956 1.5860 -1.7542 17 1 11.3075 1.0451 -0.8195 18 6 12.4792 1.8682 -2.4026 19 7 12.4647 2.5274 -3.5406 20 14 14.1034 1.3142 -1.6649 21 1 14.1093 -0.1650 -1.5351 22 1 15.2188 1.7374 -2.5492 23 1 14.2735 1.9294 -0.3241 24 6 5.5116 0.2737 -1.2261 25 6 3.9871 0.4233 -1.2478 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.5991 -0.4198 1.2347 32 1 3.8170 3.1331 0.8771 33 1 3.8570 3.1145 -0.9029 34 1 6.1339 3.4459 -0.0645 35 1 5.9921 2.0081 0.9793 36 1 8.9613 2.0494 -0.4542 37 1 8.8401 0.5116 -1.3421 38 1 8.8622 1.7225 -4.1609 39 1 10.6288 1.7097 -4.3794 40 1 9.8140 0.3135 -3.6348 41 1 10.1045 4.0094 -1.4992 42 1 10.7984 3.8684 -3.1320 43 1 9.0317 3.8809 -2.9138 44 1 13.2974 2.7256 -3.9969 45 1 5.8475 -0.1798 -2.1586 46 1 5.8055 -0.3545 -0.3852 47 1 3.6882 0.9756 -2.1387 48 1 3.5252 -0.5638 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584541168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:49 Heat of formation + Delta-G solvation = -192.381897 kcal Electronic energy + Delta-G solvation = -29222.969041 eV Core-core repulsion = 25211.324202 eV Total energy + Delta-G solvation = -4011.644839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67740 -38.37172 -38.17104 -38.11391 -36.90657 -36.37916 -33.63151 -32.77721 -32.08132 -28.88221 -28.20687 -27.69977 -27.25367 -26.67841 -24.46004 -23.57597 -21.38906 -21.23596 -19.68741 -18.90487 -17.91432 -17.65751 -17.39967 -17.08592 -16.89885 -16.75400 -16.64260 -16.03956 -15.65656 -15.33036 -15.26215 -14.85801 -14.67092 -14.43565 -14.40527 -14.17279 -13.87365 -13.52997 -13.43960 -13.01512 -12.98477 -12.89391 -12.85456 -12.79428 -12.68878 -12.49248 -12.34842 -12.20269 -12.18760 -12.08595 -11.96612 -11.94840 -11.57234 -11.43244 -11.32345 -10.79174 -10.64572 -10.62092 -10.41529 -9.85875 -8.03302 -6.22152 -0.62473 1.45100 1.45170 1.52723 1.80603 2.44049 2.71594 2.91045 3.18000 3.23312 3.31082 3.59934 3.81016 3.92699 3.97751 4.11046 4.16542 4.22855 4.39130 4.42559 4.47420 4.58152 4.58742 4.59549 4.68341 4.74851 4.81806 4.84219 4.86061 4.86821 4.88223 4.98444 4.99004 5.08129 5.10497 5.24937 5.32536 5.38139 5.49723 5.63779 5.70858 5.96786 6.10966 6.15377 6.33966 6.82176 6.89568 7.45995 8.96377 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.002893 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.858984 B = 9676.248368 C = 9870.000069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.039 3.961 4 C 0.146 3.854 5 O -0.558 6.558 6 C -0.119 4.119 7 C 0.116 3.884 8 N -0.999 5.999 9 S 2.611 3.389 10 O -0.987 6.987 11 O -0.986 6.986 12 C -0.588 4.588 13 C 0.069 3.931 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.519 4.519 17 H 0.061 0.939 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.115 3.885 25 C -0.150 4.150 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.262 0.738 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.803 -4.483 9.647 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.038 4.038 4 C 0.104 3.896 5 O -0.366 6.366 6 C -0.158 4.158 7 C -0.008 4.008 8 N -0.838 5.838 9 S 2.710 3.290 10 O -0.978 6.978 11 O -0.977 6.977 12 C -0.720 4.720 13 C 0.067 3.933 14 C -0.217 4.217 15 C -0.217 4.217 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.010 4.010 25 C -0.189 4.189 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.239 0.761 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.463 -3.545 8.816 24.390 hybrid contribution 0.942 -0.696 0.307 1.211 sum -21.521 -4.241 9.122 23.756 Atomic orbital electron populations 1.22904 0.79444 1.03829 1.00665 1.87752 1.21398 1.27779 1.95583 1.23254 0.93557 0.85359 1.01671 1.21045 0.90553 0.92570 0.85385 1.86469 1.74974 1.32356 1.42780 1.21860 0.94922 0.94767 1.04233 1.21502 0.95481 0.94564 0.89276 1.57638 1.55287 1.26254 1.44648 1.04835 0.76126 0.73749 0.74290 1.93481 1.84199 1.74665 1.45415 1.93480 1.86485 1.30832 1.86859 1.30527 1.17522 1.12085 1.11846 1.17918 0.91978 0.92462 0.90900 1.22199 1.00354 0.99524 0.99618 1.22202 1.00775 0.97572 1.01161 1.21269 0.90657 1.36352 1.07533 0.92063 1.25687 1.02164 0.95068 0.95291 1.69939 1.27612 1.40456 1.16658 0.85663 0.79183 0.78754 0.78331 1.19724 1.21195 1.19700 1.21548 0.93755 0.82623 1.03081 1.22456 0.95189 1.02762 0.98483 0.93256 0.93557 0.88430 0.91612 0.91994 0.76069 0.88070 0.90088 0.89370 0.89507 0.84939 0.84982 0.94898 0.91020 0.94198 0.94150 0.91027 0.94857 0.92876 0.89794 0.89375 0.91501 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.00 9.50 -139.78 -1.33 -7.33 16 3 C 0.04 0.55 5.06 71.98 0.36 0.92 16 4 C 0.15 2.54 0.79 -10.77 -0.01 2.53 16 5 O -0.56 -9.71 11.70 -139.78 -1.64 -11.34 16 6 C -0.12 -2.25 5.11 30.67 0.16 -2.09 16 7 C 0.12 2.75 6.19 86.37 0.53 3.29 16 8 N -1.00 -27.75 3.22 -513.07 -1.65 -29.40 16 9 S 2.61 97.03 4.49 -56.49 -0.25 96.78 16 10 O -0.99 -41.29 14.21 -127.65 -1.81 -43.11 16 11 O -0.99 -40.96 14.21 -127.65 -1.81 -42.77 16 12 C -0.59 -23.01 5.12 71.98 0.37 -22.64 16 13 C 0.07 3.42 0.52 -52.92 -0.03 3.39 16 14 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 15 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 16 C -0.52 -27.50 8.01 25.60 0.21 -27.30 16 17 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 18 C 0.02 0.93 5.15 84.65 0.44 1.36 16 19 N -0.91 -50.84 9.35 21.45 0.20 -50.64 16 20 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.11 2.71 6.19 86.36 0.53 3.24 16 25 C -0.15 -2.93 4.95 30.67 0.15 -2.78 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.39 5.02 8.57 -74.06 -0.63 4.38 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 2.21 6.86 -2.39 -0.02 2.20 16 35 H 0.09 1.86 7.81 -2.39 -0.02 1.84 16 36 H 0.13 4.70 8.14 -2.39 -0.02 4.68 16 37 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 38 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 39 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.92 8.14 -2.38 -0.02 1.91 16 42 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 43 H 0.03 1.60 5.46 -2.39 -0.01 1.58 16 44 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.08 2.16 6.86 -2.39 -0.02 2.14 16 46 H 0.09 1.78 7.81 -2.39 -0.02 1.76 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.65 7.64 -2.39 -0.02 1.63 16 Total: -1.00 -68.04 373.55 -0.87 -68.91 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.32 Total: 27.84 kcal Atomic # 6 Polarization: -58.62 SS G_CDS: 5.08 Total: -53.54 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.45 Total: -80.04 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -6.59 Total: -104.55 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 97.03 SS G_CDS: -0.25 Total: 96.78 kcal Total: -68.04 -0.87 -68.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584541168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.470 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds