Wall clock time and date at job start Tue Mar 31 2020 18:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53001 * 110.88656 * 59.29707 * 4 3 2 6 6 O 1.42904 * 109.47173 * 300.70166 * 5 4 3 7 7 C 1.55163 * 111.00432 * 295.41531 * 4 3 2 8 8 C 1.54318 * 102.94341 * 277.42940 * 7 4 3 9 9 N 1.47030 * 107.27150 * 337.80641 * 8 7 4 10 10 S 1.65599 * 125.64793 * 178.97925 * 9 8 7 11 11 O 1.42090 * 104.27571 * 206.04537 * 10 9 8 12 12 O 1.42102 * 104.27638 * 333.90666 * 10 9 8 13 13 C 1.81408 * 104.44614 * 89.97473 * 10 9 8 14 14 C 1.52999 * 109.46767 * 179.97438 * 13 10 9 15 15 C 1.53005 * 109.47287 * 300.00129 * 14 13 10 16 16 C 1.53005 * 109.47152 * 59.99846 * 14 13 10 17 17 C 1.50693 * 109.47059 * 180.02562 * 14 13 10 18 18 H 1.07998 * 120.00673 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00041 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00253 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00039 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47448 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47308 * 119.99491 * 21 19 17 24 24 H 1.48494 * 109.47395 * 239.99669 * 21 19 17 25 25 C 1.47528 * 108.71416 * 358.94175 * 9 8 7 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 30 30 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 31 31 H 1.09001 * 109.46777 * 60.70303 * 5 4 3 32 32 H 1.09005 * 109.47170 * 180.70073 * 5 4 3 33 33 H 0.96696 * 114.00037 * 180.02562 * 6 5 4 34 34 H 1.09001 * 110.71475 * 35.79420 * 7 4 3 35 35 H 1.08997 * 110.72079 * 159.06114 * 7 4 3 36 36 H 1.09001 * 109.88454 * 97.22233 * 8 7 4 37 37 H 1.08996 * 109.87911 * 218.23410 * 8 7 4 38 38 H 1.08997 * 109.46991 * 299.99456 * 13 10 9 39 39 H 1.08996 * 109.47040 * 60.00236 * 13 10 9 40 40 H 1.08997 * 109.46996 * 59.99636 * 15 14 13 41 41 H 1.08998 * 109.47188 * 180.02562 * 15 14 13 42 42 H 1.09005 * 109.46628 * 300.00059 * 15 14 13 43 43 H 1.08999 * 109.46687 * 60.00492 * 16 14 13 44 44 H 1.08998 * 109.46713 * 179.97438 * 16 14 13 45 45 H 1.08991 * 109.46968 * 299.99915 * 16 14 13 46 46 H 0.96998 * 120.00641 * 180.02562 * 20 19 17 47 47 H 1.08997 * 110.37151 * 265.30730 * 25 9 8 48 48 H 1.08994 * 110.40858 * 142.95247 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0221 0.4138 -1.2281 6 8 3.4443 -0.8932 -1.2302 7 6 4.0403 0.5212 1.3093 8 6 4.0755 1.7009 2.3036 9 7 4.1590 2.9369 1.5117 10 16 4.1982 4.4749 2.1244 11 8 3.6684 5.2812 1.0813 12 8 3.5364 4.3699 3.3775 13 6 5.9627 4.8218 2.3636 14 6 6.1325 6.2320 2.9324 15 6 5.5402 7.2505 1.9562 16 6 5.4066 6.3310 4.2756 17 6 7.5983 6.5205 3.1305 18 1 8.3351 5.7728 2.8766 19 6 7.9988 7.7388 3.6369 20 7 7.1017 8.6492 3.9467 21 14 9.8157 8.0962 3.8832 22 1 10.6138 6.9169 3.4618 23 1 10.2036 9.2743 3.0666 24 1 10.0742 8.3813 5.3174 25 6 4.2030 2.5803 0.0808 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.6887 1.8463 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.7232 0.9447 -2.1319 32 1 5.1086 0.3306 -1.1981 33 1 3.7098 -1.4395 -1.9825 34 1 3.3435 -0.2464 1.6461 35 1 5.0376 0.1041 1.1704 36 1 3.1661 1.7065 2.9046 37 1 4.9474 1.6135 2.9517 38 1 6.3847 4.0961 3.0587 39 1 6.4797 4.7518 1.4066 40 1 4.4800 7.0419 1.8125 41 1 5.6616 8.2551 2.3613 42 1 6.0574 7.1799 0.9993 43 1 5.8287 5.6055 4.9710 44 1 5.5280 7.3355 4.6809 45 1 4.3465 6.1225 4.1318 46 1 7.3835 9.5064 4.3026 47 1 5.2351 2.5276 -0.2655 48 1 3.6406 3.3042 -0.5088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584851507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:45 Heat of formation + Delta-G solvation = -160.950455 kcal Electronic energy + Delta-G solvation = -29227.247581 eV Core-core repulsion = 25216.965711 eV Total energy + Delta-G solvation = -4010.281869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.78780 -37.19131 -36.58892 -36.43661 -36.27406 -35.31701 -32.09992 -31.67835 -29.63955 -27.46222 -26.68864 -25.73790 -25.51251 -25.25350 -25.03187 -22.30874 -19.58300 -19.43281 -18.56225 -17.44873 -17.35934 -16.58172 -16.08843 -16.03816 -15.87639 -15.36670 -15.21944 -14.80523 -14.49817 -14.28852 -13.89803 -13.54512 -13.31573 -13.08103 -12.97779 -12.85764 -12.52954 -12.43995 -12.13419 -12.01365 -11.65691 -11.53759 -11.42150 -11.14885 -11.09743 -11.06824 -10.93669 -10.89964 -10.72315 -10.64557 -10.37692 -10.29821 -10.12218 -10.03785 -9.67452 -9.64319 -9.59688 -8.93818 -8.62274 -8.42437 -6.05368 -4.17424 0.77186 3.07890 3.23541 3.32054 3.34634 3.52931 3.94554 4.30634 4.35824 4.39559 4.55305 4.67435 4.80098 5.02246 5.15282 5.18739 5.19164 5.20419 5.22561 5.29930 5.33790 5.40950 5.47341 5.54944 5.60847 5.64797 5.69074 5.77991 5.80822 6.00355 6.06997 6.19585 6.36159 6.48572 6.68497 6.77487 6.88423 7.02023 7.12072 7.29391 7.48216 7.53930 7.66096 7.96018 8.07645 8.30966 8.81362 9.48131 10.95998 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.003068 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.277854 B = 9125.160798 C = 9586.646130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.078 3.922 4 C -0.068 4.068 5 C 0.096 3.904 6 O -0.547 6.547 7 C -0.107 4.107 8 C 0.116 3.884 9 N -1.021 6.021 10 S 2.606 3.394 11 O -0.960 6.960 12 O -0.958 6.958 13 C -0.580 4.580 14 C 0.081 3.919 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.502 4.502 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.129 3.871 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.370 0.630 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.027 0.973 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.027 0.973 46 H 0.262 0.738 47 H 0.075 0.925 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -17.380 -9.876 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.001 3.999 4 C -0.069 4.069 5 C 0.017 3.983 6 O -0.350 6.350 7 C -0.145 4.145 8 C -0.009 4.009 9 N -0.857 5.857 10 S 2.707 3.293 11 O -0.951 6.951 12 O -0.948 6.948 13 C -0.714 4.714 14 C 0.079 3.921 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.003 3.997 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.215 0.785 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.427 -16.532 -9.035 20.638 hybrid contribution 1.796 0.148 -0.423 1.851 sum -6.631 -16.383 -9.458 20.045 Atomic orbital electron populations 1.22711 0.82112 1.02311 0.99595 1.88051 1.18282 1.26457 1.95207 1.22315 0.91907 0.85274 1.00375 1.21755 0.94358 0.94827 0.96003 1.21922 0.95953 0.84411 0.95991 1.86698 1.72968 1.25067 1.50279 1.22594 1.02060 0.96933 0.92954 1.21740 1.01959 0.83204 0.94006 1.58980 1.90681 1.22596 1.13462 1.05382 0.79331 0.70864 0.73749 1.93527 1.78161 1.65825 1.57552 1.93538 1.73183 1.84607 1.43509 1.30565 1.20820 1.10123 1.09890 1.17947 0.97896 0.84242 0.92021 1.22274 0.96686 1.04726 0.98412 1.22273 0.96273 1.04844 0.98737 1.20981 0.89997 1.00119 1.43006 0.92248 1.24944 0.97679 0.96071 0.95071 1.69807 1.32621 1.06206 1.43523 0.86475 0.85019 0.78267 0.77855 1.19835 1.20935 1.20933 1.21875 1.00624 0.94698 0.82457 0.94476 0.89886 0.94567 0.93359 0.92931 0.93658 0.93355 0.78480 0.89127 0.90561 0.91174 0.91476 0.86409 0.86434 0.95413 0.88619 0.94474 0.94459 0.88611 0.95420 0.92774 0.90707 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.36 -4.23 8.25 -56.78 -0.47 -4.69 16 3 C 0.08 0.90 4.87 37.16 0.18 1.08 16 4 C -0.07 -0.72 0.62 -152.35 -0.09 -0.81 16 5 C 0.10 0.81 5.99 37.16 0.22 1.04 16 6 O -0.55 -4.93 11.57 -56.78 -0.66 -5.58 16 7 C -0.11 -1.13 5.70 -24.90 -0.14 -1.27 16 8 C 0.12 1.46 6.53 -3.06 -0.02 1.44 16 9 N -1.02 -14.72 3.61 -111.34 -0.40 -15.12 16 10 S 2.61 49.03 4.68 -107.50 -0.50 48.53 16 11 O -0.96 -20.00 14.90 -57.54 -0.86 -20.86 16 12 O -0.96 -20.38 15.23 -57.54 -0.88 -21.25 16 13 C -0.58 -11.37 5.12 37.16 0.19 -11.18 16 14 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 15 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 16 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 17 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.88 -24.09 9.35 55.43 0.52 -23.58 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.13 1.53 6.01 -2.47 -0.01 1.51 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.66 7.84 -51.93 -0.41 0.26 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.37 1.74 9.12 45.56 0.42 2.16 16 34 H 0.09 1.00 7.61 -51.93 -0.40 0.60 16 35 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 41 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 45 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 48 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -33.06 378.55 -8.42 -41.48 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.43 Total: 4.06 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 1.57 Total: -24.25 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.12 Total: -38.69 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.86 Total: -52.39 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.50 Total: 48.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.06 -8.42 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584851507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.471 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds