Wall clock time and date at job start Tue Mar 31 2020 18:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53001 * 110.88656 * 59.29707 * 4 3 2 6 6 O 1.42904 * 109.47173 * 300.70166 * 5 4 3 7 7 C 1.55163 * 111.00432 * 295.41531 * 4 3 2 8 8 C 1.54318 * 102.94341 * 277.42940 * 7 4 3 9 9 N 1.47030 * 107.27150 * 337.80641 * 8 7 4 10 10 S 1.65599 * 125.64793 * 178.97925 * 9 8 7 11 11 O 1.42090 * 104.27571 * 206.04537 * 10 9 8 12 12 O 1.42102 * 104.27638 * 333.90666 * 10 9 8 13 13 C 1.81408 * 104.44614 * 89.97473 * 10 9 8 14 14 C 1.52999 * 109.46767 * 179.97438 * 13 10 9 15 15 C 1.53005 * 109.47287 * 300.00129 * 14 13 10 16 16 C 1.53005 * 109.47152 * 59.99846 * 14 13 10 17 17 C 1.50693 * 109.47059 * 180.02562 * 14 13 10 18 18 H 1.07998 * 120.00673 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00041 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00253 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00039 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47448 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47308 * 119.99491 * 21 19 17 24 24 H 1.48494 * 109.47395 * 239.99669 * 21 19 17 25 25 C 1.47528 * 108.71416 * 358.94175 * 9 8 7 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 30 30 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 31 31 H 1.09001 * 109.46777 * 60.70303 * 5 4 3 32 32 H 1.09005 * 109.47170 * 180.70073 * 5 4 3 33 33 H 0.96696 * 114.00037 * 180.02562 * 6 5 4 34 34 H 1.09001 * 110.71475 * 35.79420 * 7 4 3 35 35 H 1.08997 * 110.72079 * 159.06114 * 7 4 3 36 36 H 1.09001 * 109.88454 * 97.22233 * 8 7 4 37 37 H 1.08996 * 109.87911 * 218.23410 * 8 7 4 38 38 H 1.08997 * 109.46991 * 299.99456 * 13 10 9 39 39 H 1.08996 * 109.47040 * 60.00236 * 13 10 9 40 40 H 1.08997 * 109.46996 * 59.99636 * 15 14 13 41 41 H 1.08998 * 109.47188 * 180.02562 * 15 14 13 42 42 H 1.09005 * 109.46628 * 300.00059 * 15 14 13 43 43 H 1.08999 * 109.46687 * 60.00492 * 16 14 13 44 44 H 1.08998 * 109.46713 * 179.97438 * 16 14 13 45 45 H 1.08991 * 109.46968 * 299.99915 * 16 14 13 46 46 H 0.96998 * 120.00641 * 180.02562 * 20 19 17 47 47 H 1.08997 * 110.37151 * 265.30730 * 25 9 8 48 48 H 1.08994 * 110.40858 * 142.95247 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0221 0.4138 -1.2281 6 8 3.4443 -0.8932 -1.2302 7 6 4.0403 0.5212 1.3093 8 6 4.0755 1.7009 2.3036 9 7 4.1590 2.9369 1.5117 10 16 4.1982 4.4749 2.1244 11 8 3.6684 5.2812 1.0813 12 8 3.5364 4.3699 3.3775 13 6 5.9627 4.8218 2.3636 14 6 6.1325 6.2320 2.9324 15 6 5.5402 7.2505 1.9562 16 6 5.4066 6.3310 4.2756 17 6 7.5983 6.5205 3.1305 18 1 8.3351 5.7728 2.8766 19 6 7.9988 7.7388 3.6369 20 7 7.1017 8.6492 3.9467 21 14 9.8157 8.0962 3.8832 22 1 10.6138 6.9169 3.4618 23 1 10.2036 9.2743 3.0666 24 1 10.0742 8.3813 5.3174 25 6 4.2030 2.5803 0.0808 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.6887 1.8463 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.7232 0.9447 -2.1319 32 1 5.1086 0.3306 -1.1981 33 1 3.7098 -1.4395 -1.9825 34 1 3.3435 -0.2464 1.6461 35 1 5.0376 0.1041 1.1704 36 1 3.1661 1.7065 2.9046 37 1 4.9474 1.6135 2.9517 38 1 6.3847 4.0961 3.0587 39 1 6.4797 4.7518 1.4066 40 1 4.4800 7.0419 1.8125 41 1 5.6616 8.2551 2.3613 42 1 6.0574 7.1799 0.9993 43 1 5.8287 5.6055 4.9710 44 1 5.5280 7.3355 4.6809 45 1 4.3465 6.1225 4.1318 46 1 7.3835 9.5064 4.3026 47 1 5.2351 2.5276 -0.2655 48 1 3.6406 3.3042 -0.5088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584851507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:45 Heat of formation + Delta-G solvation = -185.042316 kcal Electronic energy + Delta-G solvation = -29228.292282 eV Core-core repulsion = 25216.965711 eV Total energy + Delta-G solvation = -4011.326571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65201 -38.17604 -38.16825 -38.03097 -37.10894 -36.91139 -33.64592 -33.01920 -30.56791 -28.40177 -28.19327 -27.71402 -27.26399 -26.26389 -25.90089 -23.31388 -21.31022 -20.38800 -19.89587 -18.82199 -18.07257 -17.89918 -17.53702 -16.95763 -16.94652 -16.80487 -16.61749 -16.45363 -15.43820 -15.22483 -14.97039 -14.82248 -14.58534 -14.44736 -14.40192 -14.18186 -13.85727 -13.77764 -13.30279 -13.18177 -13.11034 -12.92443 -12.81075 -12.77736 -12.60901 -12.54639 -12.37233 -12.19682 -12.11871 -11.97657 -11.93911 -11.67895 -11.58638 -11.41475 -11.39307 -10.66501 -10.62537 -10.47052 -10.43383 -9.93270 -8.04115 -6.22965 -0.70934 1.42776 1.45854 1.55432 1.76294 2.43634 2.72722 2.86803 3.05968 3.18692 3.39018 3.57225 3.73696 4.00885 4.05968 4.11971 4.21735 4.31299 4.40161 4.45203 4.52118 4.54996 4.57778 4.59879 4.64028 4.66966 4.75168 4.83543 4.84351 4.87395 4.94857 4.96484 4.97886 5.05203 5.08885 5.18055 5.28885 5.36812 5.42428 5.51319 5.63754 5.95388 6.09803 6.31660 6.32623 6.82094 7.14598 7.45573 8.96006 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.003068 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.277854 B = 9125.160798 C = 9586.646130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.076 3.924 4 C -0.067 4.067 5 C 0.099 3.901 6 O -0.566 6.566 7 C -0.096 4.096 8 C 0.108 3.892 9 N -1.017 6.017 10 S 2.625 3.375 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.582 4.582 14 C 0.069 3.931 15 C -0.159 4.159 16 C -0.160 4.160 17 C -0.517 4.517 18 H 0.064 0.936 19 C 0.017 3.983 20 N -0.908 5.908 21 Si 0.955 3.045 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.120 3.880 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.388 0.612 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.030 0.970 46 H 0.261 0.739 47 H 0.103 0.897 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -19.476 -11.212 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.292 6.292 3 C -0.002 4.002 4 C -0.069 4.069 5 C 0.021 3.979 6 O -0.372 6.372 7 C -0.135 4.135 8 C -0.017 4.017 9 N -0.856 5.856 10 S 2.725 3.275 11 O -0.975 6.975 12 O -0.979 6.979 13 C -0.715 4.715 14 C 0.066 3.934 15 C -0.217 4.217 16 C -0.218 4.218 17 C -0.556 4.556 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.547 5.547 21 Si 0.782 3.218 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.005 4.005 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.121 0.879 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.199 -18.635 -10.384 22.514 hybrid contribution 1.325 0.730 -0.034 1.513 sum -5.874 -17.905 -10.417 21.532 Atomic orbital electron populations 1.22866 0.81064 1.03433 0.99893 1.88026 1.19528 1.26397 1.95237 1.22334 0.92920 0.85266 0.99632 1.21764 0.93520 0.94387 0.97249 1.21892 0.96875 0.84182 0.94978 1.86639 1.73480 1.25440 1.51690 1.22546 1.03026 0.95731 0.92211 1.21962 1.02095 0.83031 0.94602 1.58550 1.90294 1.21610 1.15115 1.04468 0.78647 0.71545 0.72827 1.93487 1.78456 1.67517 1.58021 1.93493 1.73714 1.85479 1.45164 1.30488 1.22235 1.07614 1.11189 1.17939 0.96930 0.86843 0.91643 1.22200 0.97126 1.03697 0.98666 1.22207 0.96724 1.03398 0.99433 1.21323 0.91163 1.00287 1.42802 0.91775 1.25692 1.01375 0.96127 0.95041 1.69947 1.34255 1.06442 1.44071 0.85543 0.80657 0.78177 0.77467 1.18849 1.20911 1.21035 1.22187 1.02491 0.95277 0.80541 0.94683 0.88390 0.93779 0.92935 0.94925 0.92704 0.91416 0.76334 0.89641 0.88580 0.92420 0.90065 0.84686 0.84343 0.95034 0.91059 0.93912 0.94151 0.91004 0.95106 0.92912 0.87879 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.37 -8.23 8.25 -128.37 -1.06 -9.29 16 3 C 0.08 1.66 4.87 71.98 0.35 2.01 16 4 C -0.07 -1.27 0.62 -50.79 -0.03 -1.31 16 5 C 0.10 1.36 5.99 71.98 0.43 1.79 16 6 O -0.57 -8.57 11.57 -128.37 -1.48 -10.05 16 7 C -0.10 -1.81 5.70 31.78 0.18 -1.63 16 8 C 0.11 2.53 6.53 86.73 0.57 3.09 16 9 N -1.02 -27.71 3.61 -506.18 -1.83 -29.53 16 10 S 2.63 96.86 4.68 -56.49 -0.26 96.59 16 11 O -0.98 -40.67 14.90 -127.65 -1.90 -42.57 16 12 O -0.99 -42.09 15.23 -127.65 -1.94 -44.03 16 13 C -0.58 -21.93 5.12 71.98 0.37 -21.56 16 14 C 0.07 3.30 0.52 -52.93 -0.03 3.28 16 15 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 16 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 17 C -0.52 -26.75 8.01 25.60 0.21 -26.54 16 18 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 19 C 0.02 0.90 5.15 84.66 0.44 1.33 16 20 N -0.91 -50.26 9.35 21.45 0.20 -50.05 16 21 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.12 2.54 6.01 86.84 0.52 3.07 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.83 7.84 -2.39 -0.02 0.81 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.39 2.50 9.12 -74.06 -0.68 1.82 16 34 H 0.08 1.73 7.61 -2.39 -0.02 1.71 16 35 H 0.10 1.44 8.03 -2.39 -0.02 1.42 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.13 4.56 8.14 -2.39 -0.02 4.54 16 39 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 41 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 42 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 45 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 46 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.10 1.62 8.04 -2.39 -0.02 1.61 16 48 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 Total: -1.00 -70.62 378.55 -0.62 -71.24 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.27 Total: 23.38 kcal Atomic # 6 Polarization: -54.93 SS G_CDS: 5.37 Total: -49.56 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.63 Total: -79.59 kcal Atomic # 8 Polarization: -99.56 SS G_CDS: -6.39 Total: -105.95 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 96.86 SS G_CDS: -0.26 Total: 96.59 kcal Total: -70.62 -0.62 -71.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584851507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.806 kcal (2) G-P(sol) polarization free energy of solvation -70.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds