Wall clock time and date at job start Tue Mar 31 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34232 * 116.99814 * 2 1 4 4 O 1.20820 * 120.00036 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99798 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47362 * 180.02562 * 5 3 2 7 7 C 1.38103 * 119.57761 * 125.02194 * 6 5 3 8 8 C 1.38797 * 119.31141 * 179.97438 * 7 6 5 9 9 C 1.38392 * 118.49422 * 359.74865 * 8 7 6 10 10 C 1.38999 * 119.10447 * 0.49464 * 9 8 7 11 11 N 1.39397 * 119.69940 * 179.77609 * 10 9 8 12 12 C 1.34779 * 120.00491 * 185.07721 * 11 10 9 13 13 O 1.21582 * 119.99728 * 354.90288 * 12 11 10 14 14 N 1.34774 * 120.00438 * 174.91222 * 12 11 10 15 15 C 1.46496 * 120.00087 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47141 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46939 * 299.99694 * 16 15 14 18 18 C 1.52998 * 109.47087 * 59.99465 * 16 15 14 19 19 C 1.50698 * 109.47117 * 179.97438 * 16 15 14 20 20 H 1.08003 * 120.00247 * 359.97438 * 19 16 15 21 21 C 1.37874 * 120.00161 * 180.02562 * 19 16 15 22 22 N 1.31517 * 119.99792 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00287 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47366 * 89.99610 * 23 21 19 25 25 H 1.48496 * 109.46877 * 209.99868 * 23 21 19 26 26 H 1.48500 * 109.47045 * 329.99717 * 23 21 19 27 27 N 1.31908 * 119.57623 * 305.00590 * 6 5 3 28 28 H 1.08993 * 109.47255 * 59.99462 * 1 2 3 29 29 H 1.09004 * 109.46797 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46805 * 299.99679 * 1 2 3 31 31 H 1.09009 * 109.46994 * 59.99803 * 5 3 2 32 32 H 1.09000 * 109.47569 * 300.00458 * 5 3 2 33 33 H 1.08007 * 120.33968 * 359.95706 * 7 6 5 34 34 H 1.07998 * 120.75204 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.45047 * 180.27082 * 9 8 7 36 36 H 0.96999 * 119.99901 * 5.06529 * 11 10 9 37 37 H 0.96999 * 119.99604 * 359.71296 * 14 12 11 38 38 H 1.09006 * 109.46454 * 299.99281 * 15 14 12 39 39 H 1.09000 * 109.47558 * 59.99020 * 15 14 12 40 40 H 1.09002 * 109.47025 * 60.00128 * 17 16 15 41 41 H 1.08999 * 109.46891 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.46713 * 300.00010 * 17 16 15 43 43 H 1.09006 * 109.47356 * 59.99872 * 18 16 15 44 44 H 1.08999 * 109.47195 * 180.02562 * 18 16 15 45 45 H 1.09002 * 109.47480 * 300.00241 * 18 16 15 46 46 H 0.97000 * 120.00227 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9937 2.7200 0.0002 7 6 4.8484 3.1776 0.9837 8 6 5.2389 4.5095 0.9788 9 6 4.7576 5.3350 -0.0224 10 6 3.8963 4.8078 -0.9775 11 7 3.4004 5.6292 -1.9887 12 6 2.4863 5.1525 -2.8569 13 8 2.1629 3.9812 -2.8167 14 7 1.9310 5.9740 -3.7696 15 6 0.9370 5.4558 -4.7128 16 6 0.4692 6.5855 -5.6326 17 6 -0.1573 7.7005 -4.7928 18 6 1.6660 7.1414 -6.4069 19 6 -0.5528 6.0523 -6.6033 20 1 -0.8397 5.0117 -6.5680 21 6 -1.1209 6.8927 -7.5371 22 7 -0.7712 8.1598 -7.5803 23 14 -2.3882 6.2320 -8.7398 24 1 -3.7459 6.3708 -8.1544 25 1 -2.3150 7.0010 -10.0080 26 1 -2.1113 4.7989 -9.0132 27 7 3.5468 3.5316 -0.9388 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.9557 0.7809 -0.8909 32 1 3.9565 0.7805 0.8891 33 1 5.2090 2.5060 1.7489 34 1 5.9067 4.8920 1.7365 35 1 5.0445 6.3755 -0.0590 36 1 3.7131 6.5441 -2.0675 37 1 2.1861 6.9094 -3.7990 38 1 1.3834 4.6612 -5.3108 39 1 0.0842 5.0601 -4.1612 40 1 0.5822 8.0860 -4.0910 41 1 -0.4902 8.5055 -5.4480 42 1 -1.0099 7.3044 -4.2412 43 1 2.1124 6.3471 -7.0051 44 1 1.3328 7.9465 -7.0618 45 1 2.4055 7.5269 -5.7051 46 1 -1.1705 8.7510 -8.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590962653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:47 Heat of formation + Delta-G solvation = -62.380892 kcal Electronic energy + Delta-G solvation = -29000.143144 eV Core-core repulsion = 24890.984371 eV Total energy + Delta-G solvation = -4109.158773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92806 -40.16998 -39.10372 -36.60095 -36.31796 -34.78511 -33.25246 -32.96217 -31.59942 -30.61209 -28.85747 -27.14721 -25.70407 -25.63071 -24.96609 -23.39242 -22.84088 -20.91405 -20.58941 -18.79127 -18.26713 -17.67429 -17.41106 -16.64221 -16.48514 -16.14424 -15.83137 -15.53355 -15.29349 -14.71560 -14.47961 -14.16191 -13.91386 -13.61558 -13.46210 -13.31814 -13.02544 -12.85546 -12.74256 -12.28035 -12.16619 -12.14764 -12.00239 -11.40201 -11.18075 -10.89317 -10.74118 -10.67716 -10.63166 -10.37315 -10.31142 -10.19778 -9.98263 -9.77983 -9.60435 -9.31805 -8.91383 -8.76488 -8.45068 -8.34186 -8.06065 -6.00467 -4.10167 0.99403 1.31749 2.35564 2.70864 2.76777 3.29910 3.36651 3.41220 3.53729 3.97787 4.04711 4.39551 4.49336 4.64592 4.84321 4.91102 4.97073 5.05846 5.09383 5.17710 5.23155 5.26423 5.28652 5.48218 5.57423 5.80340 6.05201 6.21686 6.23016 6.39123 6.44199 6.52359 6.74722 6.81922 6.84410 6.92780 7.05495 7.10473 7.13501 7.39718 7.57952 7.71555 7.87112 8.02293 8.03174 8.14897 8.39902 8.49100 8.89769 9.06538 9.55472 11.01049 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002848 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.500618 B = 9830.524053 C =11546.285554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.367 6.367 3 C 0.459 3.541 4 O -0.472 6.472 5 C -0.057 4.057 6 C 0.163 3.837 7 C -0.206 4.206 8 C -0.046 4.046 9 C -0.215 4.215 10 C 0.395 3.605 11 N -0.674 5.674 12 C 0.684 3.316 13 O -0.529 6.529 14 N -0.730 5.730 15 C 0.152 3.848 16 C 0.057 3.943 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.505 4.505 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 N -0.447 5.447 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.410 0.590 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.005 0.995 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 -8.439 18.430 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.355 6.355 5 C -0.095 4.095 6 C 0.023 3.977 7 C -0.228 4.228 8 C -0.072 4.072 9 C -0.239 4.239 10 C 0.161 3.839 11 N -0.322 5.322 12 C 0.383 3.617 13 O -0.400 6.400 14 N -0.386 5.386 15 C 0.029 3.971 16 C 0.056 3.944 17 C -0.188 4.188 18 C -0.187 4.187 19 C -0.543 4.543 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 N -0.161 5.161 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.246 0.754 37 H 0.227 0.773 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.024 0.976 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.477 -9.329 17.561 22.960 hybrid contribution -0.089 1.113 -0.138 1.125 sum 11.388 -8.216 17.424 22.378 Atomic orbital electron populations 1.23218 0.76283 1.03300 1.02765 1.86440 1.23478 1.33631 1.84922 1.23212 0.91480 0.81589 0.73788 1.90770 1.66522 1.35937 1.42305 1.20156 0.89217 0.93533 1.06619 1.20337 0.92780 0.94046 0.90579 1.21695 1.02911 0.96989 1.01229 1.21217 0.96701 0.92858 0.96420 1.21436 1.03297 1.01661 0.97517 1.18117 0.90369 0.88177 0.87222 1.42905 1.43741 1.15277 1.30274 1.16180 0.79763 0.85956 0.79819 1.91032 1.62987 1.14456 1.71486 1.45557 1.45396 1.12206 1.35440 1.21607 0.88468 0.97907 0.89109 1.18362 0.93673 0.90683 0.91704 1.21822 0.97660 1.01375 0.97898 1.21821 0.95821 1.01581 0.99516 1.20990 1.22244 0.95930 1.15168 0.92404 1.24875 0.96598 0.94841 0.97203 1.69806 1.43098 1.03970 1.35672 0.86565 0.81756 0.79061 0.80466 1.20722 1.21285 1.19881 1.67407 1.22389 1.02282 1.24044 0.91579 0.88335 0.92206 0.85889 0.86285 0.84847 0.84503 0.84720 0.75370 0.77307 0.92862 0.92891 0.97587 0.89631 0.95445 0.95433 0.89629 0.97582 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -4.58 10.57 -39.26 -0.41 -4.99 16 3 C 0.46 6.55 7.89 36.00 0.28 6.83 16 4 O -0.47 -8.85 15.08 -18.75 -0.28 -9.13 16 5 C -0.06 -0.60 6.21 -29.04 -0.18 -0.78 16 6 C 0.16 2.11 5.76 -82.61 -0.48 1.64 16 7 C -0.21 -1.97 9.70 -39.42 -0.38 -2.35 16 8 C -0.05 -0.41 10.17 -39.32 -0.40 -0.81 16 9 C -0.21 -2.27 9.94 -39.24 -0.39 -2.66 16 10 C 0.39 5.85 7.42 -154.70 -1.15 4.71 16 11 N -0.67 -9.92 5.39 -15.82 -0.09 -10.01 16 12 C 0.68 13.15 8.52 -86.92 -0.74 12.41 16 13 O -0.53 -12.40 14.61 5.29 0.08 -12.32 16 14 N -0.73 -13.65 4.96 -65.22 -0.32 -13.98 16 15 C 0.15 3.37 4.50 -4.04 -0.02 3.35 16 16 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 17 C -0.13 -2.99 8.08 37.16 0.30 -2.68 16 18 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 19 C -0.50 -13.46 8.01 -34.44 -0.28 -13.74 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 21 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.89 -23.84 9.35 55.43 0.52 -23.32 16 23 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.45 -7.57 6.75 -8.60 -0.06 -7.63 16 28 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.12 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.12 0.72 7.86 -51.93 -0.41 0.31 16 33 H 0.13 0.81 7.94 -52.48 -0.42 0.39 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.41 4.33 8.72 -40.82 -0.36 3.97 16 37 H 0.39 6.43 6.18 -40.82 -0.25 6.18 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 45 H 0.01 0.10 6.87 -51.93 -0.36 -0.25 16 46 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -35.77 381.93 -8.61 -44.38 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.54 Total: 7.60 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.23 Total: 7.67 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.05 Total: -54.94 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.62 Total: -26.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.77 -8.61 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590962653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds