Wall clock time and date at job start Tue Mar 31 2020 18:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99685 * 2 1 4 4 H 1.08999 * 109.47431 * 29.43245 * 3 2 1 5 5 C 1.53000 * 109.46935 * 269.43400 * 3 2 1 6 6 C 1.52999 * 109.47147 * 174.21527 * 5 3 2 7 7 C 1.52994 * 109.46941 * 175.00720 * 6 5 3 8 8 C 1.52997 * 109.47205 * 295.00734 * 6 5 3 9 9 C 1.53002 * 109.47148 * 149.43683 * 3 2 1 10 10 S 1.81402 * 109.46815 * 299.99713 * 9 3 2 11 11 O 1.42106 * 110.54474 * 291.62251 * 10 9 3 12 12 O 1.42105 * 110.54534 * 68.37872 * 10 9 3 13 13 N 1.65600 * 104.44734 * 180.02562 * 10 9 3 14 14 C 1.47022 * 125.64913 * 269.68885 * 13 10 9 15 15 C 1.54331 * 107.26841 * 178.85160 * 14 13 10 16 16 C 1.55161 * 103.01815 * 338.14177 * 15 14 13 17 17 O 1.42897 * 111.03709 * 277.21797 * 16 15 14 18 18 C 1.50703 * 111.00171 * 153.38018 * 16 15 14 19 19 H 1.07997 * 120.00076 * 247.79763 * 18 16 15 20 20 C 1.37876 * 119.99983 * 67.81012 * 18 16 15 21 21 N 1.31519 * 120.00112 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47121 * 59.99300 * 22 20 18 24 24 H 1.48500 * 109.46846 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46726 * 299.99082 * 22 20 18 26 26 C 1.47427 * 125.64983 * 90.00068 * 13 10 9 27 27 H 1.08999 * 109.46712 * 184.68573 * 1 2 3 28 28 H 1.09003 * 109.47429 * 304.68491 * 1 2 3 29 29 H 1.09000 * 109.47147 * 64.68457 * 1 2 3 30 30 H 1.08998 * 109.47120 * 294.21939 * 5 3 2 31 31 H 1.09000 * 109.47278 * 54.21302 * 5 3 2 32 32 H 1.09003 * 109.46944 * 55.00630 * 6 5 3 33 33 H 1.09003 * 109.47375 * 60.00174 * 7 6 5 34 34 H 1.09007 * 109.47304 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47363 * 299.99618 * 7 6 5 36 36 H 1.09000 * 109.47171 * 306.83682 * 8 6 5 37 37 H 1.09001 * 109.47351 * 66.83494 * 8 6 5 38 38 H 1.08996 * 109.47479 * 186.83609 * 8 6 5 39 39 H 1.08999 * 109.47313 * 59.99489 * 9 3 2 40 40 H 1.08993 * 109.47017 * 180.02562 * 9 3 2 41 41 H 1.09002 * 109.88119 * 298.40019 * 14 13 10 42 42 H 1.09007 * 109.88012 * 59.56256 * 14 13 10 43 43 H 1.09003 * 110.84945 * 219.67672 * 15 14 13 44 44 H 1.08999 * 110.67135 * 96.52170 * 15 14 13 45 45 H 0.96701 * 113.99933 * 292.21401 * 17 16 15 46 46 H 0.96996 * 120.00087 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.36739 * 322.93305 * 26 13 10 48 48 H 1.08998 * 110.36371 * 85.25277 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3403 2.0015 0.5050 5 6 2.2306 1.7656 -1.4424 6 6 2.7172 3.2162 -1.4464 7 6 3.0563 3.6364 -2.8779 8 6 1.6166 4.1248 -0.8953 9 6 3.3524 1.2663 0.7335 10 16 3.0910 0.7208 2.4437 11 8 2.3805 1.7078 3.1789 12 8 2.6954 -0.6437 2.4770 13 7 4.6051 0.7241 3.1144 14 6 5.5386 -0.4116 3.1282 15 6 6.8277 0.0635 3.8313 16 6 6.7602 1.6063 3.6798 17 8 7.2484 2.0180 2.4015 18 6 7.5151 2.2915 4.7896 19 1 6.9809 2.8674 5.5307 20 6 8.8879 2.1834 4.8585 21 7 9.5385 1.4820 3.9561 22 14 9.8237 3.0322 6.2346 23 1 9.3565 2.5125 7.5448 24 1 11.2763 2.7626 6.0849 25 1 9.5820 4.4959 6.1679 26 6 5.2377 1.8644 3.8022 27 1 -0.3633 -1.0242 0.0840 28 1 -0.3634 0.5848 0.8450 29 1 -0.3633 0.4394 -0.9290 30 1 2.9787 1.1301 -1.9162 31 1 1.2928 1.6955 -1.9935 32 1 3.6065 3.3028 -0.8220 33 1 2.1670 3.5498 -3.5023 34 1 3.4034 4.6697 -2.8807 35 1 3.8405 2.9891 -3.2705 36 1 0.6914 3.9488 -1.4440 37 1 1.4598 3.9061 0.1610 38 1 1.9144 5.1670 -1.0101 39 1 4.0222 0.5704 0.2285 40 1 3.7954 2.2622 0.7339 41 1 5.1003 -1.2451 3.6771 42 1 5.7665 -0.7166 2.1068 43 1 7.7112 -0.3347 3.3321 44 1 6.8196 -0.2214 4.8833 45 1 8.1969 1.8760 2.2784 46 1 10.5043 1.4056 4.0048 47 1 4.9707 2.7997 3.3103 48 1 4.9399 1.8877 4.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:19 Heat of formation + Delta-G solvation = -179.101194 kcal Electronic energy + Delta-G solvation = -29177.328714 eV Core-core repulsion = 25166.259769 eV Total energy + Delta-G solvation = -4011.068944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.06972 -38.01715 -36.73217 -36.24989 -35.55953 -34.26766 -32.14035 -31.91741 -29.24699 -28.25208 -27.39623 -27.27843 -26.68187 -24.85533 -22.42903 -21.44047 -19.99057 -19.76194 -18.51659 -17.55250 -17.06859 -16.93054 -16.68245 -15.53236 -15.42477 -15.02294 -14.97598 -14.80753 -14.42088 -14.06983 -13.98892 -13.59045 -13.31848 -13.13503 -12.87202 -12.60834 -12.53203 -12.39626 -12.23046 -11.88015 -11.79966 -11.76303 -11.70710 -11.61530 -11.43065 -11.32726 -11.22073 -10.99641 -10.79801 -10.74245 -10.72956 -10.62565 -10.53626 -10.40084 -10.01864 -9.74298 -9.41387 -8.69465 -8.31683 -8.18316 -6.30012 -4.37552 0.57398 3.05779 3.21276 3.26291 3.29749 3.41530 4.08858 4.25051 4.37330 4.48433 4.56023 4.73230 4.79296 4.87183 4.96849 5.10710 5.13242 5.20256 5.23616 5.41807 5.44711 5.48613 5.51743 5.55462 5.65683 5.71689 5.75034 5.82161 5.88840 5.94802 5.99981 6.05096 6.12799 6.19617 6.23134 6.37295 6.63684 6.82508 6.90044 6.96346 7.07658 7.35731 7.36614 7.73944 8.00601 8.64399 9.31164 9.45472 10.77611 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.003559 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.488098 B = 7865.083681 C = 8807.926010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.097 3.903 4 H 0.076 0.924 5 C -0.124 4.124 6 C -0.103 4.103 7 C -0.145 4.145 8 C -0.156 4.156 9 C -0.636 4.636 10 S 2.627 3.373 11 O -0.963 6.963 12 O -0.947 6.947 13 N -1.007 6.007 14 C 0.124 3.876 15 C -0.136 4.136 16 C 0.250 3.750 17 O -0.587 6.587 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.136 3.864 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.386 0.614 46 H 0.270 0.730 47 H 0.064 0.936 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 0.465 -10.926 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C 0.038 3.962 4 H 0.094 0.906 5 C -0.163 4.163 6 C -0.122 4.122 7 C -0.203 4.203 8 C -0.213 4.213 9 C -0.764 4.764 10 S 2.721 3.279 11 O -0.954 6.954 12 O -0.937 6.937 13 N -0.846 5.846 14 C -0.002 4.002 15 C -0.175 4.175 16 C 0.209 3.791 17 O -0.398 6.398 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.011 3.989 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.238 0.762 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.006 0.151 -10.670 17.607 hybrid contribution 1.524 0.670 0.183 1.675 sum -12.482 0.822 -10.487 16.323 Atomic orbital electron populations 1.22913 0.80550 1.03501 1.00160 1.88052 1.20169 1.26566 1.95036 1.21827 0.91881 0.85456 0.97028 0.90618 1.22047 1.02352 0.96426 0.95491 1.21201 0.99327 0.93979 0.97677 1.21815 1.01314 1.01391 0.95732 1.21967 0.98387 0.99749 1.01179 1.30880 1.05021 1.14250 1.26225 1.04429 0.72556 0.74523 0.76418 1.93560 1.70748 1.62794 1.68285 1.93559 1.80495 1.33205 1.86475 1.58499 1.34264 1.21877 1.69917 1.21781 0.90947 0.87353 1.00072 1.23186 0.94348 1.00197 0.99812 1.19602 0.87620 0.89033 0.82867 1.86029 1.30596 1.87216 1.35917 1.21496 0.92120 1.32611 1.11331 0.91633 1.24986 0.97528 0.94250 0.96199 1.69551 1.08983 1.40162 1.35099 0.86470 0.78401 0.80065 0.82001 1.20031 1.21158 1.20019 1.22137 0.94151 0.86543 0.96024 0.88907 0.93686 0.93692 0.90530 0.91228 0.90223 0.92859 0.92465 0.92514 0.92692 0.92311 0.92225 0.84086 0.83617 0.92466 0.92937 0.90070 0.91447 0.76173 0.92044 0.91720 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.88 101.05 1.10 1.36 16 2 O -0.38 -5.17 9.39 -41.97 -0.39 -5.56 16 3 C 0.10 1.21 2.11 -26.73 -0.06 1.15 16 4 H 0.08 0.88 6.03 -51.93 -0.31 0.56 16 5 C -0.12 -1.28 4.48 -26.73 -0.12 -1.40 16 6 C -0.10 -1.01 2.79 -90.62 -0.25 -1.26 16 7 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 8 C -0.16 -1.42 8.78 37.16 0.33 -1.09 16 9 C -0.64 -8.81 5.68 37.16 0.21 -8.60 16 10 S 2.63 46.18 5.45 -107.50 -0.59 45.59 16 11 O -0.96 -18.79 17.60 -57.54 -1.01 -19.80 16 12 O -0.95 -18.59 16.93 -61.89 -1.05 -19.64 16 13 N -1.01 -19.36 3.62 -111.41 -0.40 -19.76 16 14 C 0.12 2.36 6.90 -3.06 -0.02 2.34 16 15 C -0.14 -2.94 5.64 -24.89 -0.14 -3.08 16 16 C 0.25 5.86 0.89 -89.62 -0.08 5.78 16 17 O -0.59 -14.11 13.18 -35.23 -0.46 -14.57 16 18 C -0.54 -13.64 8.25 -34.44 -0.28 -13.93 16 19 H 0.07 1.64 7.77 -52.49 -0.41 1.24 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 21 N -0.90 -22.71 10.79 55.43 0.60 -22.11 16 22 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.14 2.87 6.06 -2.53 -0.02 2.85 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.43 7.98 -51.93 -0.41 0.02 16 29 H 0.04 0.36 7.90 -51.93 -0.41 -0.05 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.08 0.85 6.38 -51.93 -0.33 0.52 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.57 6.78 -51.93 -0.35 0.22 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.14 1.85 8.14 -51.92 -0.42 1.42 16 40 H 0.15 1.85 6.49 -51.93 -0.34 1.51 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 44 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 45 H 0.39 9.54 6.93 45.56 0.32 9.85 16 46 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 47 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.07 1.54 8.01 -51.93 -0.42 1.12 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -29.80 390.67 -9.22 -39.02 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.69 Total: 11.15 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 0.91 Total: -15.03 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.19 Total: -41.87 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -2.92 Total: -59.58 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.59 Total: 45.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.80 -9.22 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.085 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds