Wall clock time and date at job start Tue Mar 31 2020 18:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99685 * 2 1 4 4 H 1.08999 * 109.47431 * 29.43245 * 3 2 1 5 5 C 1.53000 * 109.46935 * 269.43400 * 3 2 1 6 6 C 1.52999 * 109.47147 * 174.21527 * 5 3 2 7 7 C 1.52994 * 109.46941 * 175.00720 * 6 5 3 8 8 C 1.52997 * 109.47205 * 295.00734 * 6 5 3 9 9 C 1.53002 * 109.47148 * 149.43683 * 3 2 1 10 10 S 1.81402 * 109.46815 * 299.99713 * 9 3 2 11 11 O 1.42106 * 110.54474 * 291.62251 * 10 9 3 12 12 O 1.42105 * 110.54534 * 68.37872 * 10 9 3 13 13 N 1.65600 * 104.44734 * 180.02562 * 10 9 3 14 14 C 1.47022 * 125.64913 * 269.68885 * 13 10 9 15 15 C 1.54331 * 107.26841 * 178.85160 * 14 13 10 16 16 C 1.55161 * 103.01815 * 338.14177 * 15 14 13 17 17 O 1.42897 * 111.03709 * 277.21797 * 16 15 14 18 18 C 1.50703 * 111.00171 * 153.38018 * 16 15 14 19 19 H 1.07997 * 120.00076 * 247.79763 * 18 16 15 20 20 C 1.37876 * 119.99983 * 67.81012 * 18 16 15 21 21 N 1.31519 * 120.00112 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47121 * 59.99300 * 22 20 18 24 24 H 1.48500 * 109.46846 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46726 * 299.99082 * 22 20 18 26 26 C 1.47427 * 125.64983 * 90.00068 * 13 10 9 27 27 H 1.08999 * 109.46712 * 184.68573 * 1 2 3 28 28 H 1.09003 * 109.47429 * 304.68491 * 1 2 3 29 29 H 1.09000 * 109.47147 * 64.68457 * 1 2 3 30 30 H 1.08998 * 109.47120 * 294.21939 * 5 3 2 31 31 H 1.09000 * 109.47278 * 54.21302 * 5 3 2 32 32 H 1.09003 * 109.46944 * 55.00630 * 6 5 3 33 33 H 1.09003 * 109.47375 * 60.00174 * 7 6 5 34 34 H 1.09007 * 109.47304 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47363 * 299.99618 * 7 6 5 36 36 H 1.09000 * 109.47171 * 306.83682 * 8 6 5 37 37 H 1.09001 * 109.47351 * 66.83494 * 8 6 5 38 38 H 1.08996 * 109.47479 * 186.83609 * 8 6 5 39 39 H 1.08999 * 109.47313 * 59.99489 * 9 3 2 40 40 H 1.08993 * 109.47017 * 180.02562 * 9 3 2 41 41 H 1.09002 * 109.88119 * 298.40019 * 14 13 10 42 42 H 1.09007 * 109.88012 * 59.56256 * 14 13 10 43 43 H 1.09003 * 110.84945 * 219.67672 * 15 14 13 44 44 H 1.08999 * 110.67135 * 96.52170 * 15 14 13 45 45 H 0.96701 * 113.99933 * 292.21401 * 17 16 15 46 46 H 0.96996 * 120.00087 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.36739 * 322.93305 * 26 13 10 48 48 H 1.08998 * 110.36371 * 85.25277 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3403 2.0015 0.5050 5 6 2.2306 1.7656 -1.4424 6 6 2.7172 3.2162 -1.4464 7 6 3.0563 3.6364 -2.8779 8 6 1.6166 4.1248 -0.8953 9 6 3.3524 1.2663 0.7335 10 16 3.0910 0.7208 2.4437 11 8 2.3805 1.7078 3.1789 12 8 2.6954 -0.6437 2.4770 13 7 4.6051 0.7241 3.1144 14 6 5.5386 -0.4116 3.1282 15 6 6.8277 0.0635 3.8313 16 6 6.7602 1.6063 3.6798 17 8 7.2484 2.0180 2.4015 18 6 7.5151 2.2915 4.7896 19 1 6.9809 2.8674 5.5307 20 6 8.8879 2.1834 4.8585 21 7 9.5385 1.4820 3.9561 22 14 9.8237 3.0322 6.2346 23 1 9.3565 2.5125 7.5448 24 1 11.2763 2.7626 6.0849 25 1 9.5820 4.4959 6.1679 26 6 5.2377 1.8644 3.8022 27 1 -0.3633 -1.0242 0.0840 28 1 -0.3634 0.5848 0.8450 29 1 -0.3633 0.4394 -0.9290 30 1 2.9787 1.1301 -1.9162 31 1 1.2928 1.6955 -1.9935 32 1 3.6065 3.3028 -0.8220 33 1 2.1670 3.5498 -3.5023 34 1 3.4034 4.6697 -2.8807 35 1 3.8405 2.9891 -3.2705 36 1 0.6914 3.9488 -1.4440 37 1 1.4598 3.9061 0.1610 38 1 1.9144 5.1670 -1.0101 39 1 4.0222 0.5704 0.2285 40 1 3.7954 2.2622 0.7339 41 1 5.1003 -1.2451 3.6771 42 1 5.7665 -0.7166 2.1068 43 1 7.7112 -0.3347 3.3321 44 1 6.8196 -0.2214 4.8833 45 1 8.1969 1.8760 2.2784 46 1 10.5043 1.4056 4.0048 47 1 4.9707 2.7997 3.3103 48 1 4.9399 1.8877 4.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592077743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:19 Heat of formation + Delta-G solvation = -200.457232 kcal Electronic energy + Delta-G solvation = -29178.254781 eV Core-core repulsion = 25166.259769 eV Total energy + Delta-G solvation = -4011.995012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.98077 -39.71899 -38.20368 -37.08418 -37.00405 -36.03206 -34.06800 -32.87803 -30.94641 -29.96408 -28.19451 -28.06117 -27.50114 -26.70100 -23.45652 -22.90784 -21.58797 -20.76548 -19.96826 -19.22293 -18.56793 -18.01384 -17.93741 -16.94970 -16.85900 -16.44205 -16.19720 -15.93638 -15.70997 -15.61265 -15.05686 -14.72052 -14.51900 -14.35582 -14.20025 -14.06660 -13.64078 -13.49036 -13.40682 -13.25798 -13.23549 -13.15876 -13.10226 -12.95870 -12.73382 -12.51734 -12.50997 -12.31672 -12.26382 -12.18031 -11.97826 -11.86832 -11.79560 -11.51847 -11.45642 -11.21952 -10.66256 -10.57997 -10.08984 -9.81975 -8.21004 -6.34848 -0.80457 1.46238 1.47650 1.54270 1.62887 2.41940 2.50099 2.78417 3.02872 3.09952 3.39505 3.67296 3.74282 3.86724 3.98271 4.06889 4.11740 4.20890 4.30523 4.35918 4.38705 4.41128 4.49355 4.59230 4.61960 4.72148 4.74287 4.81004 4.83612 4.88113 4.95579 4.98526 5.01821 5.09489 5.21265 5.26508 5.32134 5.42007 5.43384 5.46953 5.52733 5.57912 5.82765 6.02818 6.11838 6.69182 7.36516 7.51327 8.84883 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.003559 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.488098 B = 7865.083681 C = 8807.926010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.404 6.404 3 C 0.091 3.909 4 H 0.083 0.917 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.144 4.144 8 C -0.158 4.158 9 C -0.616 4.616 10 S 2.628 3.372 11 O -0.988 6.988 12 O -0.970 6.970 13 N -1.012 6.012 14 C 0.125 3.875 15 C -0.129 4.129 16 C 0.238 3.762 17 O -0.588 6.588 18 C -0.562 4.562 19 H 0.060 0.940 20 C 0.036 3.964 21 N -0.911 5.911 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.275 1.275 26 C 0.139 3.861 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.381 0.619 46 H 0.271 0.729 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.508 0.892 -12.290 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.324 6.324 3 C 0.032 3.968 4 H 0.101 0.899 5 C -0.156 4.156 6 C -0.125 4.125 7 C -0.201 4.201 8 C -0.215 4.215 9 C -0.747 4.747 10 S 2.726 3.274 11 O -0.979 6.979 12 O -0.961 6.961 13 N -0.850 5.850 14 C 0.000 4.000 15 C -0.169 4.169 16 C 0.196 3.804 17 O -0.398 6.398 18 C -0.601 4.601 19 H 0.078 0.922 20 C -0.165 4.165 21 N -0.550 5.550 22 Si 0.784 3.216 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.200 1.200 26 C 0.013 3.987 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.232 0.768 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.739 0.558 -11.988 19.007 hybrid contribution 1.693 0.541 0.548 1.860 sum -13.046 1.099 -11.440 17.386 Atomic orbital electron populations 1.23175 0.79020 1.04486 1.01610 1.88014 1.21994 1.27090 1.95263 1.22004 0.90936 0.85556 0.98321 0.89901 1.22015 1.03294 0.96468 0.93859 1.21223 0.99016 0.93896 0.98320 1.21799 1.01822 1.01455 0.95009 1.21994 0.98865 0.99884 1.00763 1.30704 1.06817 1.15072 1.22145 1.04304 0.71639 0.73775 0.77662 1.93523 1.71167 1.63026 1.70152 1.93525 1.80611 1.34532 1.87437 1.58477 1.34327 1.21183 1.70988 1.21763 0.89800 0.87541 1.00937 1.23015 0.95303 0.99198 0.99392 1.19743 0.88672 0.89874 0.82086 1.86014 1.30118 1.87420 1.36272 1.21778 0.92891 1.33301 1.12114 0.92215 1.25598 0.98136 0.94749 0.98024 1.69621 1.09139 1.40436 1.35850 0.85609 0.77335 0.78994 0.79639 1.19945 1.20706 1.19997 1.21973 0.92937 0.87515 0.96225 0.88093 0.93607 0.91115 0.90632 0.89443 0.91477 0.91713 0.92251 0.92651 0.91294 0.93233 0.91838 0.82915 0.82283 0.91539 0.91203 0.91192 0.92416 0.76792 0.91922 0.91114 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.88 113.37 1.23 1.47 16 2 O -0.40 -10.26 9.39 -142.53 -1.34 -11.60 16 3 C 0.09 2.08 2.11 30.60 0.06 2.15 16 4 H 0.08 1.77 6.03 -2.39 -0.01 1.75 16 5 C -0.12 -2.10 4.48 30.59 0.14 -1.96 16 6 C -0.11 -1.83 2.79 -10.80 -0.03 -1.86 16 7 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 8 C -0.16 -2.53 8.78 71.98 0.63 -1.90 16 9 C -0.62 -16.04 5.68 71.98 0.41 -15.63 16 10 S 2.63 90.62 5.45 -56.49 -0.31 90.31 16 11 O -0.99 -38.29 17.60 -127.65 -2.25 -40.54 16 12 O -0.97 -37.58 16.93 -123.49 -2.09 -39.67 16 13 N -1.01 -38.48 3.62 -506.41 -1.83 -40.32 16 14 C 0.12 4.70 6.90 86.73 0.60 5.30 16 15 C -0.13 -5.63 5.64 31.79 0.18 -5.45 16 16 C 0.24 11.17 0.89 -10.15 -0.01 11.16 16 17 O -0.59 -28.28 13.18 -148.98 -1.96 -30.24 16 18 C -0.56 -28.80 8.25 25.60 0.21 -28.59 16 19 H 0.06 3.04 7.77 -2.91 -0.02 3.02 16 20 C 0.04 1.80 5.30 84.65 0.45 2.24 16 21 N -0.91 -46.04 10.79 21.45 0.23 -45.81 16 22 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 C 0.14 5.86 6.06 86.85 0.53 6.39 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 0.82 7.98 -2.39 -0.02 0.80 16 29 H 0.07 0.92 7.90 -2.39 -0.02 0.90 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.27 7.90 -2.39 -0.02 1.25 16 32 H 0.07 1.32 6.38 -2.39 -0.02 1.30 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 0.88 6.78 -2.39 -0.02 0.86 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.16 3.77 6.49 -2.39 -0.02 3.75 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.07 3.16 7.85 -2.39 -0.02 3.14 16 44 H 0.06 2.56 8.03 -2.39 -0.02 2.55 16 45 H 0.38 18.94 6.93 -74.06 -0.51 18.43 16 46 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 47 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 48 H 0.07 2.93 8.01 -2.39 -0.02 2.91 16 Total: -1.00 -62.50 390.67 -2.04 -64.54 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: 0.43 Total: 38.87 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.06 Total: -28.12 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.60 Total: -86.12 kcal Atomic # 8 Polarization: -114.41 SS G_CDS: -7.64 Total: -122.05 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 90.62 SS G_CDS: -0.31 Total: 90.31 kcal Total: -62.50 -2.04 -64.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.915 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds