Wall clock time and date at job start Tue Mar 31 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34680 * 116.99617 * 2 1 4 4 O 1.21433 * 120.00438 * 0.02562 * 3 2 1 5 5 C 1.48056 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.39217 * 119.68718 * 180.02562 * 5 3 2 7 7 C 1.38752 * 119.20579 * 180.02562 * 6 5 3 8 8 C 1.38346 * 118.57235 * 359.75065 * 7 6 5 9 9 C 1.39388 * 119.30177 * 0.47436 * 8 7 6 10 10 N 1.39369 * 119.62449 * 179.79122 * 9 8 7 11 11 C 1.34781 * 119.99837 * 185.10617 * 10 9 8 12 12 O 1.21578 * 120.00049 * 354.91068 * 11 10 9 13 13 N 1.34776 * 120.00162 * 174.89845 * 11 10 9 14 14 C 1.46501 * 120.00306 * 179.72587 * 13 11 10 15 15 C 1.52998 * 109.47203 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47316 * 300.00383 * 15 14 13 17 17 C 1.53001 * 109.46881 * 60.00508 * 15 14 13 18 18 C 1.52997 * 109.47107 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47085 * 180.02562 * 18 15 14 20 20 H 1.08002 * 120.00356 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99911 * 179.97438 * 19 18 15 22 22 N 1.31515 * 120.00272 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99984 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46960 * 89.99910 * 23 21 19 25 25 H 1.48500 * 109.46945 * 209.99760 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.99786 * 23 21 19 27 27 N 1.32012 * 120.74623 * 359.51558 * 9 8 7 28 28 H 1.09004 * 109.47028 * 60.00104 * 1 2 3 29 29 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47137 * 299.99819 * 1 2 3 31 31 H 1.08006 * 120.39623 * 359.97438 * 6 5 3 32 32 H 1.08002 * 120.71070 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.34616 * 180.24641 * 8 7 6 34 34 H 0.97001 * 120.00343 * 5.11149 * 10 9 8 35 35 H 0.97009 * 119.99779 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.46885 * 300.00895 * 14 13 11 37 37 H 1.09004 * 109.46492 * 60.00366 * 14 13 11 38 38 H 1.09000 * 109.47297 * 60.00219 * 16 15 14 39 39 H 1.09000 * 109.46799 * 179.97438 * 16 15 14 40 40 H 1.08993 * 109.47109 * 299.99775 * 16 15 14 41 41 H 1.08995 * 109.47329 * 59.99766 * 17 15 14 42 42 H 1.09000 * 109.47382 * 179.97438 * 17 15 14 43 43 H 1.09005 * 109.46998 * 299.99894 * 17 15 14 44 44 H 1.09000 * 109.47462 * 300.00449 * 18 15 14 45 45 H 1.09004 * 109.46717 * 60.00168 * 18 15 14 46 46 H 0.97000 * 120.00666 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2185 0.0005 5 6 3.5419 1.2776 0.0006 6 6 4.1671 2.5215 0.0011 7 6 5.5533 2.5825 0.0011 8 6 6.2678 1.3978 0.0058 9 6 5.5792 0.1859 0.0004 10 7 6.2923 -1.0116 0.0007 11 6 5.6385 -2.1852 -0.1084 12 8 4.4229 -2.2057 -0.1139 13 7 6.3323 -3.3360 -0.2116 14 6 5.6218 -4.6122 -0.3242 15 6 6.6358 -5.7533 -0.4264 16 6 7.5129 -5.5470 -1.6630 17 6 7.5150 -5.7678 0.8258 18 6 5.8937 -7.0860 -0.5445 19 6 6.8926 -8.2099 -0.6445 20 1 7.9509 -7.9953 -0.6253 21 6 6.4554 -9.5125 -0.7596 22 7 7.3270 -10.4934 -0.8473 23 14 4.6249 -9.8840 -0.7922 24 1 4.1397 -9.8591 -2.1956 25 1 4.3820 -11.2275 -0.2081 26 1 3.8980 -8.8605 0.0011 27 7 4.2594 0.1596 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.5802 3.4281 0.0007 32 1 6.0635 3.5344 0.0019 33 1 7.3477 1.4119 0.0100 34 1 7.2590 -1.0004 0.0795 35 1 7.3023 -3.3197 -0.2071 36 1 4.9973 -4.7592 0.5569 37 1 4.9951 -4.6016 -1.2160 38 1 8.0416 -4.5975 -1.5792 39 1 8.2356 -6.3597 -1.7354 40 1 6.8866 -5.5367 -2.5549 41 1 6.8902 -5.9147 1.7067 42 1 8.2372 -6.5810 0.7533 43 1 8.0437 -4.8183 0.9096 44 1 5.2686 -7.2332 0.3362 45 1 5.2677 -7.0753 -1.4368 46 1 7.0195 -11.4098 -0.9286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593260509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:44 Heat of formation + Delta-G solvation = -63.932212 kcal Electronic energy + Delta-G solvation = -28478.657566 eV Core-core repulsion = 24369.431523 eV Total energy + Delta-G solvation = -4109.226043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30874 -40.39091 -39.36834 -37.40051 -36.64527 -34.99542 -33.69781 -32.98095 -32.12752 -30.55151 -28.09633 -27.81440 -26.57984 -26.32292 -25.18128 -23.78600 -22.36586 -21.62415 -20.81427 -19.12327 -18.73088 -17.64919 -17.60642 -16.86824 -16.61647 -16.59387 -16.43398 -15.75835 -15.67772 -14.99495 -14.49053 -14.27259 -14.11277 -13.87149 -13.78462 -13.52529 -13.42813 -13.28461 -12.73495 -12.62773 -12.40583 -12.27436 -12.23494 -11.31906 -11.18339 -11.14205 -11.01948 -10.97979 -10.93533 -10.62406 -10.50254 -10.42508 -10.29629 -9.98199 -9.75918 -9.59816 -9.35870 -9.00574 -8.90850 -8.55072 -8.53648 -6.04889 -4.02240 0.17257 0.90866 2.12493 2.27286 2.43544 3.17096 3.31911 3.39981 3.44365 3.63946 3.72482 4.20044 4.37028 4.45560 4.51888 4.61795 4.84330 4.93256 4.97336 5.02063 5.27872 5.32589 5.36190 5.45340 5.52613 5.61457 5.65905 5.80178 6.07640 6.09350 6.09413 6.12588 6.30571 6.34258 6.45929 6.57726 6.58932 6.68527 6.89571 7.00084 7.03566 7.19640 7.30346 7.36078 7.62124 7.77589 7.99788 8.51596 8.61901 8.98920 9.57904 11.07773 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002448 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.414961 B =11435.565038 C =12970.130242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.526 3.474 4 O -0.504 6.504 5 C 0.124 3.876 6 C -0.145 4.145 7 C -0.053 4.053 8 C -0.179 4.179 9 C 0.383 3.617 10 N -0.671 5.671 11 C 0.685 3.315 12 O -0.523 6.523 13 N -0.732 5.732 14 C 0.145 3.855 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 N -0.426 5.426 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.414 0.586 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 27.364 2.165 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.234 6.234 3 C 0.369 3.631 4 O -0.392 6.392 5 C -0.014 4.014 6 C -0.167 4.167 7 C -0.079 4.079 8 C -0.204 4.204 9 C 0.148 3.852 10 N -0.320 5.320 11 C 0.384 3.616 12 O -0.393 6.393 13 N -0.388 5.388 14 C 0.022 3.978 15 C -0.063 4.063 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.189 1.189 27 N -0.143 5.143 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.251 0.749 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.945 26.446 2.120 26.823 hybrid contribution 0.303 0.379 -0.013 0.485 sum -3.643 26.825 2.107 27.153 Atomic orbital electron populations 1.23367 0.76190 1.04197 1.02300 1.86818 1.23000 1.31059 1.82561 1.20824 0.87889 0.81893 0.72521 1.90835 1.65887 1.36289 1.46224 1.19879 0.90863 0.89282 1.01412 1.21963 0.95413 0.98102 1.01265 1.21339 0.93032 0.98517 0.94982 1.21759 1.01666 0.91347 1.05581 1.18103 0.88032 0.85156 0.93908 1.42812 1.10268 1.03382 1.75579 1.16121 0.86088 0.80061 0.79285 1.91099 1.10421 1.84736 1.53029 1.45379 1.09836 1.05369 1.78266 1.21554 0.94647 0.79913 1.01730 1.20700 0.95042 0.94819 0.95733 1.21771 0.99858 0.99943 0.96970 1.21769 0.99851 1.00114 0.96799 1.19592 0.96179 0.91646 0.96588 1.21069 0.94277 0.89541 1.49972 0.90410 1.24999 0.97285 0.96427 0.94724 1.69898 1.33823 0.99685 1.50923 0.86862 0.86570 0.77686 0.78686 1.20365 1.21532 1.18917 1.67652 1.05551 1.29327 1.11791 0.91840 0.87662 0.91848 0.83253 0.83245 0.83718 0.74945 0.77020 0.91789 0.91768 0.95101 0.90901 0.93369 0.93359 0.90886 0.95103 0.96290 0.96737 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.32 -4.57 10.38 -40.44 -0.42 -4.99 16 3 C 0.53 7.18 7.95 34.76 0.28 7.46 16 4 O -0.50 -7.02 16.10 -19.21 -0.31 -7.33 16 5 C 0.12 1.57 6.74 -83.04 -0.56 1.01 16 6 C -0.15 -1.29 9.63 -39.03 -0.38 -1.66 16 7 C -0.05 -0.33 10.16 -39.35 -0.40 -0.73 16 8 C -0.18 -1.24 9.94 -39.11 -0.39 -1.62 16 9 C 0.38 4.27 7.42 -154.90 -1.15 3.12 16 10 N -0.67 -6.91 5.39 -15.80 -0.09 -6.99 16 11 C 0.69 9.93 8.52 -86.92 -0.74 9.19 16 12 O -0.52 -9.99 14.60 5.30 0.08 -9.91 16 13 N -0.73 -9.66 4.96 -65.23 -0.32 -9.99 16 14 C 0.14 2.36 4.56 -4.04 -0.02 2.35 16 15 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 16 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 17 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 18 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 19 C -0.51 -13.46 8.20 -34.44 -0.28 -13.74 16 20 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 21 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 22 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 23 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 27 N -0.43 -6.15 7.64 -8.94 -0.07 -6.22 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.15 1.11 7.63 -52.48 -0.40 0.71 16 32 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.41 2.44 8.72 -40.82 -0.36 2.08 16 35 H 0.39 4.14 6.18 -40.82 -0.25 3.88 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.40 6.87 -51.93 -0.36 0.05 16 39 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -35.95 381.76 -7.97 -43.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.46 Total: 1.72 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.24 Total: 3.57 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.30 Total: -49.45 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.65 Total: -22.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.95 -7.97 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593260509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.011 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds