Wall clock time and date at job start Tue Mar 31 2020 18:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 C 1.50694 * 109.46971 * 240.00055 * 2 1 3 5 5 H 1.08001 * 120.00352 * 237.69090 * 4 2 1 6 6 C 1.37881 * 119.99872 * 57.69472 * 4 2 1 7 7 N 1.31515 * 120.00388 * 6.57993 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 186.58067 * 6 4 2 9 9 H 1.48500 * 109.47291 * 84.99265 * 8 6 4 10 10 H 1.48496 * 109.47504 * 204.99561 * 8 6 4 11 11 H 1.48497 * 109.47243 * 324.99731 * 8 6 4 12 12 C 1.52997 * 109.47279 * 119.99912 * 2 1 3 13 13 S 1.81398 * 109.47461 * 300.00064 * 12 2 1 14 14 O 1.42100 * 110.54037 * 68.37177 * 13 12 2 15 15 O 1.42096 * 110.53940 * 291.62638 * 13 12 2 16 16 N 1.65593 * 104.45070 * 179.97438 * 13 12 2 17 17 C 1.46504 * 120.00323 * 65.00031 * 16 13 12 18 18 C 1.52998 * 109.47554 * 164.99901 * 17 16 13 19 19 C 1.52996 * 109.47401 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.57089 * 300.15782 * 19 18 17 21 21 C 1.53176 * 109.52278 * 180.02562 * 19 18 17 22 22 C 1.53180 * 109.10790 * 183.15570 * 21 19 18 23 23 C 1.53096 * 109.15974 * 56.93607 * 22 21 19 24 24 O 1.42899 * 109.41755 * 302.38789 * 23 22 21 25 25 C 1.42905 * 114.09605 * 61.16023 * 24 23 22 26 26 H 1.09010 * 109.46853 * 306.66596 * 1 2 3 27 27 H 1.08998 * 109.47602 * 66.66482 * 1 2 3 28 28 H 1.09005 * 109.47115 * 186.67567 * 1 2 3 29 29 H 1.08992 * 109.46833 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46816 * 300.00559 * 3 2 1 31 31 H 1.08998 * 109.46653 * 60.00207 * 3 2 1 32 32 H 0.96993 * 120.00549 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47073 * 179.97438 * 12 2 1 34 34 H 1.09007 * 109.46823 * 59.99850 * 12 2 1 35 35 H 0.97001 * 119.99881 * 244.99819 * 16 13 12 36 36 H 1.08997 * 109.46823 * 44.99765 * 17 16 13 37 37 H 1.08995 * 109.47034 * 285.00134 * 17 16 13 38 38 H 1.09007 * 109.46686 * 59.99850 * 18 17 16 39 39 H 1.09005 * 109.47202 * 300.00364 * 18 17 16 40 40 H 0.96707 * 114.00078 * 59.84225 * 20 19 18 41 41 H 1.09000 * 109.54284 * 63.24883 * 21 19 18 42 42 H 1.08992 * 109.54215 * 303.06827 * 21 19 18 43 43 H 1.09001 * 109.52060 * 176.84224 * 22 21 19 44 44 H 1.09003 * 109.52055 * 297.03155 * 22 21 19 45 45 H 1.08993 * 109.48130 * 62.37839 * 23 22 21 46 46 H 1.09001 * 109.47575 * 182.40587 * 23 22 21 47 47 H 1.08998 * 109.48164 * 58.82335 * 25 24 23 48 48 H 1.08993 * 109.48191 * 178.84856 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6836 -1.5662 -1.1319 6 6 1.6604 -0.2676 -2.4821 7 7 0.9754 0.8479 -2.6085 8 14 2.1295 -1.2523 -3.9986 9 1 1.1191 -2.3156 -4.2306 10 1 2.1796 -0.3514 -5.1780 11 1 3.4627 -1.8730 -3.7929 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0281 -0.0184 2.8544 15 8 2.0480 1.4100 2.8543 16 7 2.0531 -0.7408 3.9935 17 6 3.5015 -0.7982 4.2059 18 6 3.7904 -1.3347 5.6093 19 6 5.3031 -1.3940 5.8313 20 8 5.8962 -2.2563 4.8583 21 6 5.5936 -1.9316 7.2359 22 6 7.1062 -1.9129 7.4770 23 6 7.6286 -0.4872 7.2809 24 8 7.3002 -0.0377 5.9649 25 6 5.8971 0.0108 5.6981 26 1 -0.3633 0.6137 0.8244 27 1 -0.3634 0.4070 -0.9436 28 1 -0.3633 -1.0207 0.1195 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7141 1.1596 -3.4890 33 1 3.1300 -0.7216 1.2489 34 1 1.6766 -1.7489 1.2492 35 1 1.4559 -1.2152 4.5929 36 1 3.9234 0.2018 4.1052 37 1 3.9515 -1.4587 3.4647 38 1 3.3685 -2.3347 5.7099 39 1 3.3404 -0.6742 6.3506 40 1 5.7517 -1.9760 3.9441 41 1 5.2238 -2.9536 7.3189 42 1 5.0985 -1.3034 7.9763 43 1 7.3169 -2.2413 8.4948 44 1 7.5962 -2.5811 6.7688 45 1 7.1684 0.1729 8.0160 46 1 8.7110 -0.4760 7.4094 47 1 5.4141 0.6774 6.4125 48 1 5.7320 0.3810 4.6864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593660554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:34 Heat of formation + Delta-G solvation = -181.802730 kcal Electronic energy + Delta-G solvation = -28711.704444 eV Core-core repulsion = 24700.518352 eV Total energy + Delta-G solvation = -4011.186092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.35222 -37.21897 -36.56851 -36.30633 -35.43551 -35.17433 -33.38725 -31.71184 -31.64261 -28.25869 -26.67043 -25.74855 -25.61160 -25.25381 -24.23057 -21.74927 -20.42147 -19.65798 -18.87347 -17.51625 -17.22758 -16.76430 -16.24506 -16.04726 -15.80154 -15.55685 -15.18470 -14.85755 -14.82461 -14.61832 -14.31318 -13.70363 -13.46756 -13.11642 -13.03788 -12.94940 -12.55139 -12.47604 -12.10814 -12.07546 -11.89306 -11.75088 -11.51279 -11.47983 -11.22371 -11.15926 -11.05097 -10.97321 -10.75190 -10.66185 -10.43710 -10.39537 -10.33895 -10.12717 -9.70832 -9.66487 -9.50193 -9.31633 -8.73454 -8.40148 -6.06284 -4.17983 0.80527 3.11905 3.25149 3.32319 3.33782 3.54157 3.89657 4.17939 4.27537 4.35271 4.36793 4.38088 4.63990 4.70045 4.75115 4.81472 4.90264 5.03197 5.14410 5.18651 5.22280 5.29380 5.37310 5.41772 5.56072 5.57650 5.64688 5.68217 5.71817 5.76532 5.94129 5.97279 6.33861 6.65574 6.75510 6.86857 6.87807 6.98095 7.05262 7.28288 7.40762 7.45743 7.65443 7.95040 8.07226 8.30933 8.80441 9.47446 10.94853 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002958 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.545147 B = 9464.523522 C =10285.860560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.964 6.964 16 N -1.129 6.129 17 C 0.108 3.892 18 C -0.152 4.152 19 C 0.104 3.896 20 O -0.548 6.548 21 C -0.108 4.108 22 C -0.153 4.153 23 C 0.058 3.942 24 O -0.371 6.371 25 C 0.029 3.971 26 H 0.026 0.974 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.379 0.621 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 -4.880 19.582 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.691 3.309 14 O -0.955 6.955 15 O -0.954 6.954 16 N -0.886 5.886 17 C -0.019 4.019 18 C -0.191 4.191 19 C 0.062 3.938 20 O -0.355 6.355 21 C -0.145 4.145 22 C -0.190 4.190 23 C -0.019 4.019 24 O -0.289 6.289 25 C -0.048 4.048 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.228 0.772 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.080 0.920 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.776 -4.135 19.843 22.087 hybrid contribution -0.099 -1.127 -1.142 1.608 sum 8.676 -5.262 18.701 21.276 Atomic orbital electron populations 1.22221 0.97005 0.99680 1.03027 1.17927 0.92711 0.92300 0.89053 1.22313 0.99723 0.97739 1.02419 1.20934 1.30143 1.13833 0.89408 0.92260 1.24938 0.95041 0.94807 0.98913 1.69806 1.38460 1.20147 1.23588 0.86559 0.78890 0.79958 0.82286 1.20549 1.21188 1.19968 1.30535 1.11201 1.12906 1.16903 1.05640 0.74420 0.75229 0.75640 1.93561 1.29477 1.86657 1.85789 1.93539 1.78153 1.38146 1.85535 1.55843 1.13646 1.71267 1.47870 1.21343 0.81240 1.01897 0.97401 1.22440 0.96130 1.03314 0.97237 1.21782 0.90835 0.90635 0.90520 1.86546 1.78327 1.52217 1.18372 1.21568 0.96881 1.02505 0.93570 1.22134 0.96007 0.98476 1.02423 1.22613 1.00832 0.93880 0.84603 1.87992 1.22432 1.86642 1.31839 1.23437 0.82621 0.95729 1.03028 0.95522 0.88719 0.94566 0.94484 0.88400 0.95444 0.92680 0.86491 0.86213 0.75529 0.90015 0.91631 0.89777 0.89898 0.77246 0.90521 0.90512 0.90992 0.90057 0.93362 0.88866 0.92020 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 7.58 37.16 0.28 -3.65 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.98 7.80 37.16 0.29 -3.69 16 4 C -0.50 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 6 C 0.07 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -23.87 9.39 55.43 0.52 -23.35 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C -0.58 -10.87 5.01 37.16 0.19 -10.68 16 13 S 2.59 45.73 4.49 -107.50 -0.48 45.24 16 14 O -0.96 -19.68 15.84 -57.54 -0.91 -20.59 16 15 O -0.96 -19.37 15.12 -57.54 -0.87 -20.24 16 16 N -1.13 -13.92 5.89 -10.61 -0.06 -13.98 16 17 C 0.11 1.09 5.48 -4.04 -0.02 1.07 16 18 C -0.15 -1.22 4.63 -26.73 -0.12 -1.35 16 19 C 0.10 0.88 0.76 -90.48 -0.07 0.82 16 20 O -0.55 -5.34 12.36 -42.59 -0.53 -5.87 16 21 C -0.11 -0.80 5.03 -26.55 -0.13 -0.93 16 22 C -0.15 -1.13 5.98 -26.59 -0.16 -1.29 16 23 C 0.06 0.46 6.84 37.21 0.25 0.71 16 24 O -0.37 -3.99 10.70 -42.59 -0.46 -4.45 16 25 C 0.03 0.27 5.35 37.21 0.20 0.47 16 26 H 0.03 0.61 5.96 -51.92 -0.31 0.30 16 27 H 0.09 2.48 5.99 -51.93 -0.31 2.17 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.57 6.01 -51.93 -0.31 2.26 16 31 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.12 1.93 8.14 -51.93 -0.42 1.50 16 34 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 35 H 0.41 4.26 8.62 -34.46 -0.30 3.96 16 36 H 0.08 0.86 6.06 -51.93 -0.31 0.55 16 37 H 0.07 0.56 6.78 -51.93 -0.35 0.21 16 38 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.38 2.89 7.34 45.56 0.33 3.22 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.93 6.59 -51.93 -0.34 0.59 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -33.07 373.14 -9.14 -42.21 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.21 Total: 8.32 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 0.26 Total: -28.34 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.46 Total: -37.33 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.76 Total: -51.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.48 Total: 45.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.07 -9.14 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593660554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.596 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds