Wall clock time and date at job start Tue Mar 31 2020 19:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46975 * 2 1 4 4 H 1.09004 * 109.46931 * 53.92375 * 3 2 1 5 5 C 1.50697 * 109.46890 * 173.91658 * 3 2 1 6 6 H 1.08008 * 119.99778 * 120.00369 * 5 3 2 7 7 C 1.37872 * 120.00767 * 300.00204 * 5 3 2 8 8 N 1.31522 * 119.99608 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00561 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47174 * 120.00194 * 9 7 5 12 12 H 1.48498 * 109.47067 * 240.00031 * 9 7 5 13 13 N 1.46497 * 109.47492 * 293.92212 * 3 2 1 14 14 S 1.65603 * 120.00301 * 144.61053 * 13 3 2 15 15 O 1.42092 * 104.27706 * 306.63411 * 14 13 3 16 16 O 1.42099 * 104.27596 * 178.77251 * 14 13 3 17 17 C 1.81399 * 104.44546 * 62.70377 * 14 13 3 18 18 C 1.53000 * 109.47084 * 180.02562 * 17 14 13 19 19 O 1.42899 * 110.54044 * 68.06146 * 18 17 14 20 20 C 1.42900 * 114.00109 * 63.02831 * 19 18 17 21 21 C 1.53001 * 109.47344 * 140.48481 * 20 19 18 22 22 C 1.53001 * 109.47428 * 260.49101 * 20 19 18 23 23 C 1.54809 * 110.48973 * 190.67936 * 18 17 14 24 24 C 1.55002 * 102.09070 * 139.55824 * 23 18 17 25 25 O 1.44576 * 103.58510 * 323.05498 * 24 23 18 26 26 C 1.43745 * 106.86970 * 39.88185 * 25 24 23 27 27 H 1.08999 * 109.47024 * 185.13974 * 1 2 3 28 28 H 1.08998 * 109.47036 * 305.13976 * 1 2 3 29 29 H 1.09000 * 109.47236 * 65.13755 * 1 2 3 30 30 H 1.08997 * 109.47002 * 240.00542 * 2 1 3 31 31 H 1.08997 * 109.47311 * 119.99858 * 2 1 3 32 32 H 0.96994 * 120.00171 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99483 * 324.61055 * 13 3 2 34 34 H 1.09002 * 109.47270 * 60.00097 * 17 14 13 35 35 H 1.08999 * 109.47269 * 299.99856 * 17 14 13 36 36 H 1.09006 * 109.46753 * 20.49215 * 20 19 18 37 37 H 1.09004 * 109.47099 * 60.00502 * 21 20 19 38 38 H 1.08999 * 109.47023 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47323 * 300.00581 * 21 20 19 40 40 H 1.08993 * 109.47215 * 66.17418 * 22 20 19 41 41 H 1.09003 * 109.47117 * 186.17568 * 22 20 19 42 42 H 1.09004 * 109.46635 * 306.17429 * 22 20 19 43 43 H 1.08995 * 110.91018 * 257.75304 * 23 18 17 44 44 H 1.08999 * 110.90940 * 21.32620 * 23 18 17 45 45 H 1.08997 * 110.62095 * 81.47411 * 24 23 18 46 46 H 1.08999 * 110.61651 * 204.32077 * 24 23 18 47 47 H 1.09007 * 109.87716 * 214.17097 * 26 25 24 48 48 H 1.09000 * 109.87770 * 93.17069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5905 1.9868 0.8306 5 6 3.5394 1.4452 0.1506 6 1 4.1585 1.8850 -0.6175 7 6 4.1211 0.8863 1.2687 8 7 3.3673 0.3512 2.2042 9 14 5.9798 0.8890 1.4549 10 1 6.5946 1.5468 0.2740 11 1 6.3529 1.6323 2.6852 12 1 6.4693 -0.5095 1.5539 13 7 1.6748 2.0897 -1.2625 14 16 1.2689 3.6951 -1.2831 15 8 0.2443 3.8101 -0.3054 16 8 1.0098 3.9735 -2.6522 17 6 2.7720 4.5489 -0.7333 18 6 2.5215 6.0580 -0.7093 19 8 1.5872 6.3949 0.3182 20 6 2.0423 6.0940 1.6390 21 6 1.6215 7.2152 2.5912 22 6 1.4254 4.7728 2.1025 23 6 3.8508 6.8249 -0.5055 24 6 3.6858 8.0236 -1.4743 25 8 2.9932 7.4519 -2.6072 26 6 2.0124 6.5422 -2.0808 27 1 -0.3633 -1.0235 0.0921 28 1 -0.3633 0.5915 0.8404 29 1 -0.3634 0.4321 -0.9324 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7764 -0.0423 2.9907 33 1 1.6706 1.5778 -2.0864 34 1 3.5882 4.3266 -1.4208 35 1 3.0374 4.2091 0.2678 36 1 3.1289 6.0071 1.6379 37 1 0.5349 7.3023 2.5924 38 1 1.9690 6.9859 3.5985 39 1 2.0610 8.1564 2.2610 40 1 1.8117 3.9573 1.4912 41 1 1.6835 4.5979 3.1469 42 1 0.3413 4.8222 1.9995 43 1 3.9481 7.1678 0.5245 44 1 4.7032 6.2082 -0.7905 45 1 3.0843 8.8081 -1.0152 46 1 4.6593 8.4128 -1.7725 47 1 1.8959 5.6927 -2.7539 48 1 1.0577 7.0546 -1.9621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595329415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:10 Heat of formation + Delta-G solvation = -167.801530 kcal Electronic energy + Delta-G solvation = -30646.075797 eV Core-core repulsion = 26635.496842 eV Total energy + Delta-G solvation = -4010.578954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28629 -37.59869 -36.60457 -35.97728 -35.33616 -33.24454 -32.32167 -31.44032 -30.63508 -30.08370 -27.26856 -26.69709 -26.23042 -23.17177 -23.09285 -21.53613 -20.29117 -19.98539 -18.80690 -17.55060 -17.21432 -16.78487 -16.06632 -15.93525 -15.50928 -15.19244 -15.02243 -14.82196 -14.54444 -14.30237 -13.78036 -13.24379 -13.16649 -13.04746 -12.88450 -12.77569 -12.35290 -12.30004 -12.02210 -11.88185 -11.77308 -11.65843 -11.59533 -11.41904 -11.27023 -11.19792 -11.10098 -10.98076 -10.90323 -10.73043 -10.42361 -10.32884 -10.25826 -9.89854 -9.79262 -9.75381 -9.66615 -9.48105 -8.60776 -8.25446 -6.24904 -4.36645 0.88151 3.11545 3.22024 3.23089 3.41280 3.51673 3.81110 4.14159 4.23820 4.34150 4.59833 4.68529 4.86723 5.03567 5.06803 5.07789 5.11794 5.25644 5.37429 5.42375 5.53244 5.57790 5.64227 5.77590 5.83786 5.88924 5.95570 5.98543 6.12095 6.13369 6.19199 6.23223 6.34905 6.41806 6.54230 6.66610 6.79494 6.88822 7.01300 7.15058 7.28942 7.49526 7.56013 7.79051 7.96188 8.13183 8.68756 9.32056 10.77948 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.005591 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.655541 B = 5007.138978 C = 5616.757315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.545 4.545 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.281 1.281 13 N -1.105 6.105 14 S 2.615 3.385 15 O -0.945 6.945 16 O -0.984 6.984 17 C -0.657 4.657 18 C 0.100 3.900 19 O -0.360 6.360 20 C 0.073 3.927 21 C -0.150 4.150 22 C -0.176 4.176 23 C -0.174 4.174 24 C 0.047 3.953 25 O -0.365 6.365 26 C 0.021 3.979 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.126 0.874 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 10.399 -1.332 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.584 4.584 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.865 5.865 14 S 2.707 3.293 15 O -0.934 6.934 16 O -0.974 6.974 17 C -0.784 4.784 18 C 0.059 3.941 19 O -0.280 6.280 20 C 0.016 3.984 21 C -0.207 4.207 22 C -0.233 4.233 23 C -0.213 4.213 24 C -0.030 4.030 25 O -0.284 6.284 26 C -0.056 4.056 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.143 0.857 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.672 10.893 -1.454 11.010 hybrid contribution 2.116 -0.638 0.458 2.257 sum 1.444 10.255 -0.996 10.404 Atomic orbital electron populations 1.21822 0.98673 0.99419 1.00640 1.21792 0.92368 0.98974 1.03011 1.18698 0.94217 0.91185 0.79212 0.93049 1.21673 0.91692 1.39682 1.05362 0.91859 1.24908 0.98148 0.94729 0.95609 1.69866 1.34903 1.37709 1.09228 0.86581 0.85470 0.78123 0.78146 1.19678 1.20864 1.20735 1.55558 1.86753 1.26512 1.17670 1.04608 0.76556 0.74206 0.73978 1.93585 1.52047 1.85541 1.62259 1.93465 1.84835 1.84622 1.34459 1.31390 1.25103 1.05802 1.16117 1.22421 0.90606 0.90994 0.90105 1.88042 1.41645 1.83786 1.14495 1.22291 0.98509 0.95808 0.81811 1.21925 1.02826 0.97630 0.98368 1.22470 1.03409 0.96059 1.01343 1.23784 0.97803 0.97908 1.01773 1.23580 0.97514 0.95275 0.86611 1.88948 1.51356 1.59109 1.28982 1.23970 0.93131 0.96077 0.92453 0.94644 0.93209 0.94363 0.94253 0.87739 0.92479 0.76258 0.84033 0.82553 0.91481 0.91577 0.91221 0.92550 0.91373 0.91895 0.90386 0.88951 0.88898 0.91732 0.88647 0.85657 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.75 37.16 0.36 -2.52 16 2 C -0.12 -2.63 5.38 -26.73 -0.14 -2.78 16 3 C 0.27 5.99 2.13 -69.08 -0.15 5.84 16 4 H 0.05 1.24 6.39 -51.93 -0.33 0.91 16 5 C -0.54 -12.77 8.08 -34.44 -0.28 -13.05 16 6 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 7 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.88 -22.22 11.29 55.43 0.63 -21.59 16 9 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -1.11 -21.43 4.94 -5.88 -0.03 -21.46 16 14 S 2.61 49.26 4.71 -107.50 -0.51 48.75 16 15 O -0.94 -19.81 14.64 -57.90 -0.85 -20.66 16 16 O -0.98 -19.45 15.35 -57.54 -0.88 -20.33 16 17 C -0.66 -10.83 4.04 37.16 0.15 -10.68 16 18 C 0.10 1.53 0.65 -89.09 -0.06 1.47 16 19 O -0.36 -5.70 9.24 -35.23 -0.33 -6.03 16 20 C 0.07 1.05 2.26 -26.73 -0.06 0.99 16 21 C -0.15 -1.75 9.56 37.16 0.36 -1.39 16 22 C -0.18 -2.94 8.01 37.16 0.30 -2.65 16 23 C -0.17 -2.16 5.91 -24.72 -0.15 -2.30 16 24 C 0.05 0.55 7.72 38.21 0.29 0.84 16 25 O -0.37 -5.48 11.54 -35.23 -0.41 -5.88 16 26 C 0.02 0.32 6.61 37.73 0.25 0.57 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.70 7.93 -51.93 -0.41 0.29 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 2.51 5.93 -51.93 -0.31 2.20 16 32 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 33 H 0.40 7.16 8.80 -34.48 -0.30 6.85 16 34 H 0.14 2.10 7.98 -51.92 -0.41 1.69 16 35 H 0.16 2.69 4.97 -51.92 -0.26 2.43 16 36 H 0.07 0.90 5.82 -51.93 -0.30 0.60 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.28 3.61 -51.93 -0.19 1.10 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 43 H 0.09 1.01 6.28 -51.93 -0.33 0.69 16 44 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.13 2.10 4.74 -51.92 -0.25 1.85 16 48 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -28.26 373.22 -8.64 -36.90 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -7.66 Total: 14.68 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 0.78 Total: -24.05 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.60 Total: -43.05 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.46 Total: -52.91 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 49.26 SS G_CDS: -0.51 Total: 48.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.26 -8.64 -36.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.901 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds