Wall clock time and date at job start Tue Mar 31 2020 19:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46975 * 2 1 4 4 H 1.09004 * 109.46931 * 53.92375 * 3 2 1 5 5 C 1.50697 * 109.46890 * 173.91658 * 3 2 1 6 6 H 1.08008 * 119.99778 * 120.00369 * 5 3 2 7 7 C 1.37872 * 120.00767 * 300.00204 * 5 3 2 8 8 N 1.31522 * 119.99608 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00561 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47174 * 120.00194 * 9 7 5 12 12 H 1.48498 * 109.47067 * 240.00031 * 9 7 5 13 13 N 1.46497 * 109.47492 * 293.92212 * 3 2 1 14 14 S 1.65603 * 120.00301 * 144.61053 * 13 3 2 15 15 O 1.42092 * 104.27706 * 306.63411 * 14 13 3 16 16 O 1.42099 * 104.27596 * 178.77251 * 14 13 3 17 17 C 1.81399 * 104.44546 * 62.70377 * 14 13 3 18 18 C 1.53000 * 109.47084 * 180.02562 * 17 14 13 19 19 O 1.42899 * 110.54044 * 68.06146 * 18 17 14 20 20 C 1.42900 * 114.00109 * 63.02831 * 19 18 17 21 21 C 1.53001 * 109.47344 * 140.48481 * 20 19 18 22 22 C 1.53001 * 109.47428 * 260.49101 * 20 19 18 23 23 C 1.54809 * 110.48973 * 190.67936 * 18 17 14 24 24 C 1.55002 * 102.09070 * 139.55824 * 23 18 17 25 25 O 1.44576 * 103.58510 * 323.05498 * 24 23 18 26 26 C 1.43745 * 106.86970 * 39.88185 * 25 24 23 27 27 H 1.08999 * 109.47024 * 185.13974 * 1 2 3 28 28 H 1.08998 * 109.47036 * 305.13976 * 1 2 3 29 29 H 1.09000 * 109.47236 * 65.13755 * 1 2 3 30 30 H 1.08997 * 109.47002 * 240.00542 * 2 1 3 31 31 H 1.08997 * 109.47311 * 119.99858 * 2 1 3 32 32 H 0.96994 * 120.00171 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99483 * 324.61055 * 13 3 2 34 34 H 1.09002 * 109.47270 * 60.00097 * 17 14 13 35 35 H 1.08999 * 109.47269 * 299.99856 * 17 14 13 36 36 H 1.09006 * 109.46753 * 20.49215 * 20 19 18 37 37 H 1.09004 * 109.47099 * 60.00502 * 21 20 19 38 38 H 1.08999 * 109.47023 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47323 * 300.00581 * 21 20 19 40 40 H 1.08993 * 109.47215 * 66.17418 * 22 20 19 41 41 H 1.09003 * 109.47117 * 186.17568 * 22 20 19 42 42 H 1.09004 * 109.46635 * 306.17429 * 22 20 19 43 43 H 1.08995 * 110.91018 * 257.75304 * 23 18 17 44 44 H 1.08999 * 110.90940 * 21.32620 * 23 18 17 45 45 H 1.08997 * 110.62095 * 81.47411 * 24 23 18 46 46 H 1.08999 * 110.61651 * 204.32077 * 24 23 18 47 47 H 1.09007 * 109.87716 * 214.17097 * 26 25 24 48 48 H 1.09000 * 109.87770 * 93.17069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5905 1.9868 0.8306 5 6 3.5394 1.4452 0.1506 6 1 4.1585 1.8850 -0.6175 7 6 4.1211 0.8863 1.2687 8 7 3.3673 0.3512 2.2042 9 14 5.9798 0.8890 1.4549 10 1 6.5946 1.5468 0.2740 11 1 6.3529 1.6323 2.6852 12 1 6.4693 -0.5095 1.5539 13 7 1.6748 2.0897 -1.2625 14 16 1.2689 3.6951 -1.2831 15 8 0.2443 3.8101 -0.3054 16 8 1.0098 3.9735 -2.6522 17 6 2.7720 4.5489 -0.7333 18 6 2.5215 6.0580 -0.7093 19 8 1.5872 6.3949 0.3182 20 6 2.0423 6.0940 1.6390 21 6 1.6215 7.2152 2.5912 22 6 1.4254 4.7728 2.1025 23 6 3.8508 6.8249 -0.5055 24 6 3.6858 8.0236 -1.4743 25 8 2.9932 7.4519 -2.6072 26 6 2.0124 6.5422 -2.0808 27 1 -0.3633 -1.0235 0.0921 28 1 -0.3633 0.5915 0.8404 29 1 -0.3634 0.4321 -0.9324 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7764 -0.0423 2.9907 33 1 1.6706 1.5778 -2.0864 34 1 3.5882 4.3266 -1.4208 35 1 3.0374 4.2091 0.2678 36 1 3.1289 6.0071 1.6379 37 1 0.5349 7.3023 2.5924 38 1 1.9690 6.9859 3.5985 39 1 2.0610 8.1564 2.2610 40 1 1.8117 3.9573 1.4912 41 1 1.6835 4.5979 3.1469 42 1 0.3413 4.8222 1.9995 43 1 3.9481 7.1678 0.5245 44 1 4.7032 6.2082 -0.7905 45 1 3.0843 8.8081 -1.0152 46 1 4.6593 8.4128 -1.7725 47 1 1.8959 5.6927 -2.7539 48 1 1.0577 7.0546 -1.9621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595329415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:10 Heat of formation + Delta-G solvation = -187.626525 kcal Electronic energy + Delta-G solvation = -30646.935473 eV Core-core repulsion = 26635.496842 eV Total energy + Delta-G solvation = -4011.438631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41588 -38.77504 -38.14742 -37.66089 -36.92119 -34.39694 -34.11889 -32.64569 -32.26164 -31.14361 -28.55510 -28.32581 -27.47174 -24.85756 -24.15605 -22.69540 -21.98730 -21.16909 -20.31478 -18.80230 -18.67337 -18.49653 -17.36727 -17.21757 -17.11548 -16.58377 -16.31572 -16.12937 -15.73655 -15.62046 -15.30781 -14.87947 -14.66883 -14.30562 -14.09119 -13.87863 -13.67978 -13.55711 -13.45008 -13.31589 -13.11298 -13.06372 -12.97678 -12.89408 -12.76988 -12.74665 -12.62162 -12.42266 -12.12032 -12.08423 -11.93727 -11.71146 -11.61519 -11.53317 -11.46387 -11.34340 -10.78401 -10.71558 -10.45757 -9.92717 -8.08836 -6.25514 -0.61201 1.42305 1.48363 1.55546 1.92262 2.32991 2.44289 2.72319 2.78127 3.13763 3.18679 3.29441 3.47273 3.66277 3.92936 4.05349 4.12355 4.16928 4.24028 4.28221 4.35214 4.46435 4.54592 4.57801 4.64451 4.73291 4.76237 4.79792 4.81747 4.85325 4.87335 4.95331 4.97118 5.00890 5.12452 5.31834 5.33034 5.44270 5.50492 5.62345 5.67536 5.78794 6.02249 6.14339 6.23330 6.43985 6.85282 7.45491 8.93509 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.005591 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.655541 B = 5007.138978 C = 5616.757315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.028 0.972 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.029 3.971 8 N -0.907 5.907 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.287 1.287 13 N -1.106 6.106 14 S 2.615 3.385 15 O -0.972 6.972 16 O -0.995 6.995 17 C -0.643 4.643 18 C 0.095 3.905 19 O -0.372 6.372 20 C 0.069 3.931 21 C -0.146 4.146 22 C -0.177 4.177 23 C -0.170 4.170 24 C 0.043 3.957 25 O -0.379 6.379 26 C 0.018 3.982 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.264 0.736 33 H 0.412 0.588 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 11.906 -1.421 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.045 0.955 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.865 5.865 14 S 2.710 3.290 15 O -0.962 6.962 16 O -0.986 6.986 17 C -0.773 4.773 18 C 0.053 3.947 19 O -0.292 6.292 20 C 0.013 3.987 21 C -0.203 4.203 22 C -0.234 4.234 23 C -0.208 4.208 24 C -0.033 4.033 25 O -0.298 6.298 26 C -0.059 4.059 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.142 0.858 47 H 0.129 0.871 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.088 12.387 -1.571 12.533 hybrid contribution 1.536 -1.083 0.472 1.938 sum 2.625 11.303 -1.099 11.656 Atomic orbital electron populations 1.21748 0.97150 1.00605 1.00447 1.21718 0.93801 0.98547 1.02131 1.18438 0.93639 0.91195 0.79476 0.95473 1.21905 0.92343 1.39054 1.05282 0.91291 1.25530 1.01462 0.94692 0.95533 1.69985 1.36256 1.38600 1.09660 0.85737 0.81421 0.77680 0.78240 1.18789 1.20716 1.21288 1.55404 1.86870 1.27099 1.17146 1.04454 0.77144 0.74009 0.73394 1.93552 1.54168 1.85775 1.62725 1.93454 1.85485 1.84645 1.34977 1.31244 1.23359 1.06760 1.15984 1.22535 0.92254 0.90014 0.89917 1.88043 1.42494 1.83562 1.15133 1.22434 0.99117 0.95456 0.81725 1.21923 1.02565 0.97324 0.98501 1.22470 1.02296 0.96984 1.01659 1.23827 0.96001 0.97822 1.03182 1.23859 0.98794 0.95039 0.85587 1.88933 1.51325 1.59053 1.30498 1.23868 0.93615 0.95940 0.92478 0.92528 0.94609 0.93543 0.93561 0.90084 0.92640 0.75444 0.82265 0.83020 0.90048 0.92301 0.89555 0.90655 0.93847 0.90855 0.92218 0.87139 0.88084 0.90584 0.85822 0.87132 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 9.75 71.98 0.70 -4.84 16 2 C -0.12 -5.34 5.38 30.60 0.16 -5.18 16 3 C 0.28 12.43 2.13 44.25 0.09 12.52 16 4 H 0.03 1.37 6.39 -2.39 -0.02 1.35 16 5 C -0.55 -25.45 8.08 25.60 0.21 -25.25 16 6 H 0.07 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.03 1.40 5.29 84.65 0.45 1.84 16 8 N -0.91 -46.31 11.29 21.45 0.24 -46.07 16 9 Si 0.94 38.42 29.54 68.60 2.03 40.44 16 10 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 13 N -1.11 -43.14 4.94 -172.52 -0.85 -43.99 16 14 S 2.61 99.50 4.71 -56.49 -0.27 99.24 16 15 O -0.97 -42.06 14.64 -127.30 -1.86 -43.92 16 16 O -1.00 -39.60 15.35 -127.65 -1.96 -41.56 16 17 C -0.64 -20.66 4.04 71.98 0.29 -20.37 16 18 C 0.09 2.74 0.65 -9.80 -0.01 2.73 16 19 O -0.37 -11.40 9.24 -148.98 -1.38 -12.78 16 20 C 0.07 1.90 2.26 30.59 0.07 1.97 16 21 C -0.15 -3.07 9.56 71.98 0.69 -2.38 16 22 C -0.18 -5.98 8.01 71.98 0.58 -5.40 16 23 C -0.17 -3.67 5.91 31.90 0.19 -3.48 16 24 C 0.04 0.86 7.72 72.67 0.56 1.42 16 25 O -0.38 -10.61 11.54 -148.98 -1.72 -12.33 16 26 C 0.02 0.56 6.61 72.35 0.48 1.03 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.70 7.93 -2.39 -0.02 1.68 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 3.97 5.93 -2.39 -0.01 3.96 16 32 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 33 H 0.41 14.54 8.80 -96.74 -0.85 13.69 16 34 H 0.16 4.48 7.98 -2.39 -0.02 4.46 16 35 H 0.15 5.14 4.97 -2.39 -0.01 5.13 16 36 H 0.08 1.99 5.82 -2.38 -0.01 1.97 16 37 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.67 3.61 -2.39 -0.01 1.66 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.06 2.19 7.71 -2.39 -0.02 2.17 16 43 H 0.11 1.99 6.28 -2.39 -0.02 1.97 16 44 H 0.10 2.03 7.76 -2.39 -0.02 2.01 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.11 3.69 4.74 -2.38 -0.01 3.67 16 48 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 Total: -1.00 -60.59 373.22 -1.19 -61.78 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: 0.12 Total: 44.56 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 4.46 Total: -45.37 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -0.61 Total: -90.06 kcal Atomic # 8 Polarization: -103.67 SS G_CDS: -6.92 Total: -110.59 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: 99.50 SS G_CDS: -0.27 Total: 99.24 kcal Total: -60.59 -1.19 -61.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.850 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds