Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 C 1.53001 * 109.47110 * 239.99812 * 2 1 3 5 5 N 1.46505 * 109.46893 * 59.99962 * 4 2 1 6 6 S 1.65604 * 119.99777 * 164.99845 * 5 4 2 7 7 O 1.42102 * 104.27419 * 181.07359 * 6 5 4 8 8 O 1.42098 * 104.27782 * 308.92891 * 6 5 4 9 9 C 1.81391 * 104.45053 * 65.00384 * 6 5 4 10 10 C 1.52993 * 109.47397 * 179.97438 * 9 6 5 11 11 C 1.50704 * 109.47620 * 179.97438 * 10 9 6 12 12 H 1.08001 * 119.99284 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00221 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99882 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00107 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47228 * 90.00268 * 15 13 11 17 17 H 1.48500 * 109.47175 * 210.00703 * 15 13 11 18 18 H 1.48508 * 109.47163 * 330.00421 * 15 13 11 19 19 C 1.53003 * 109.47259 * 120.00272 * 2 1 3 20 20 O 1.42897 * 109.52232 * 59.87168 * 19 2 1 21 21 C 1.53173 * 109.57080 * 299.71426 * 19 2 1 22 22 C 1.53177 * 109.04588 * 183.08970 * 21 19 2 23 23 C 1.53092 * 109.16443 * 56.96276 * 22 21 19 24 24 O 1.42905 * 109.42428 * 302.41109 * 23 22 21 25 25 C 1.42901 * 114.09770 * 61.14988 * 24 23 22 26 26 H 1.08993 * 109.47042 * 299.99830 * 1 2 3 27 27 H 1.08995 * 109.47077 * 59.99949 * 1 2 3 28 28 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47294 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47085 * 300.00077 * 3 2 1 31 31 H 1.09002 * 109.46762 * 59.99842 * 3 2 1 32 32 H 1.08998 * 109.47549 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47482 * 300.00568 * 4 2 1 34 34 H 0.97001 * 120.00198 * 345.00283 * 5 4 2 35 35 H 1.09008 * 109.47051 * 299.99775 * 9 6 5 36 36 H 1.08999 * 109.47461 * 59.99427 * 9 6 5 37 37 H 1.09008 * 109.46910 * 299.99952 * 10 9 6 38 38 H 1.08999 * 109.47209 * 59.99363 * 10 9 6 39 39 H 0.96998 * 120.00181 * 179.97438 * 14 13 11 40 40 H 0.96705 * 113.99844 * 180.12388 * 20 19 2 41 41 H 1.08995 * 109.54947 * 302.95040 * 21 19 2 42 42 H 1.09003 * 109.54673 * 63.12717 * 21 19 2 43 43 H 1.09004 * 109.51365 * 297.06592 * 22 21 19 44 44 H 1.08998 * 109.53811 * 176.88037 * 22 21 19 45 45 H 1.09002 * 109.48343 * 182.42096 * 23 22 21 46 46 H 1.08999 * 109.47546 * 62.39689 * 23 22 21 47 47 H 1.09002 * 109.48282 * 58.82206 * 25 24 23 48 48 H 1.08997 * 109.48587 * 178.84728 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 16 2.2318 -0.3496 -3.9213 7 8 1.5364 0.5043 -4.8194 8 8 3.6281 -0.2020 -3.7029 9 6 1.8180 -2.0858 -4.2447 10 6 2.3977 -2.5049 -5.5971 11 6 2.0545 -3.9476 -5.8656 12 1 1.4807 -4.5094 -5.1434 13 6 2.4740 -4.5504 -7.0325 14 7 2.1749 -5.8095 -7.2664 15 14 3.4670 -3.5787 -8.2810 16 1 4.9144 -3.7199 -7.9804 17 1 3.1917 -4.0981 -9.6448 18 1 3.0844 -2.1455 -8.2107 19 6 2.0401 -0.7213 1.2492 20 8 1.5619 -2.0679 1.2518 21 6 1.5366 0.0031 2.5014 22 6 2.1167 -0.6822 3.7425 23 6 3.6447 -0.6847 3.6472 24 8 4.0448 -1.3462 2.4454 25 6 3.5710 -0.7220 1.2504 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 0.8300 0.6134 -2.3730 35 1 2.2396 -2.7123 -3.4585 36 1 0.7346 -2.2041 -4.2618 37 1 1.9758 -1.8784 -6.3831 38 1 3.4811 -2.3865 -5.5805 39 1 2.4697 -6.2335 -8.0875 40 1 1.8460 -2.5847 2.0182 41 1 1.8596 1.0437 2.4754 42 1 0.4480 -0.0401 2.5348 43 1 1.7534 -1.7086 3.7950 44 1 1.8083 -0.1397 4.6361 45 1 4.0617 -1.2093 4.5070 46 1 4.0097 0.3422 3.6358 47 1 3.9350 0.3046 1.2075 48 1 3.9351 -1.2732 0.3834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595365638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = -183.002366 kcal Electronic energy + Delta-G solvation = -28939.473871 eV Core-core repulsion = 24928.235759 eV Total energy + Delta-G solvation = -4011.238112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02317 -37.90892 -36.67297 -35.86069 -35.52796 -33.91729 -33.61097 -32.72309 -31.45232 -29.70452 -27.59846 -26.77399 -25.93199 -24.79553 -23.99396 -21.27888 -21.04353 -19.10727 -18.95159 -17.81369 -17.65490 -16.96005 -16.71047 -16.11577 -15.89175 -15.60748 -15.37464 -15.10194 -14.66325 -14.48164 -14.29719 -14.11781 -13.81017 -13.56556 -13.42721 -13.10695 -12.77891 -12.60612 -12.50168 -12.33838 -11.90180 -11.87362 -11.81669 -11.70660 -11.63709 -11.60640 -11.26966 -11.22953 -11.16037 -11.12193 -11.01816 -10.74403 -10.42590 -10.31418 -10.12372 -9.76637 -9.50886 -9.45025 -9.10338 -8.63676 -6.13800 -4.14834 0.70643 3.05135 3.28653 3.35801 3.40124 3.44024 3.79905 4.08517 4.19565 4.24047 4.32769 4.38292 4.44543 4.58381 4.62342 4.71831 4.78019 4.87740 4.97993 5.09005 5.17909 5.22184 5.27404 5.31934 5.37315 5.38205 5.48648 5.49086 5.57080 5.57992 5.61614 5.64948 5.71651 5.75899 5.84943 5.94811 6.03476 6.16022 6.32485 6.76453 6.85066 6.95474 7.06807 7.40831 7.57721 8.39758 8.87885 9.45905 10.98669 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.003010 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.849517 B = 9300.527112 C = 9904.938068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.152 4.152 4 C 0.123 3.877 5 N -1.124 6.124 6 S 2.591 3.409 7 O -0.969 6.969 8 O -0.967 6.967 9 C -0.583 4.583 10 C -0.007 4.007 11 C -0.519 4.519 12 H 0.078 0.922 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.116 3.884 20 O -0.545 6.545 21 C -0.152 4.152 22 C -0.160 4.160 23 C 0.053 3.947 24 O -0.377 6.377 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.378 0.622 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 14.055 24.527 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.052 4.052 3 C -0.209 4.209 4 C -0.003 4.003 5 N -0.883 5.883 6 S 2.688 3.312 7 O -0.959 6.959 8 O -0.957 6.957 9 C -0.716 4.716 10 C -0.046 4.046 11 C -0.558 4.558 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.186 1.186 19 C 0.074 3.926 20 O -0.352 6.352 21 C -0.189 4.189 22 C -0.198 4.198 23 C -0.023 4.023 24 O -0.296 6.296 25 C -0.052 4.052 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.227 0.773 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.160 14.459 23.318 27.462 hybrid contribution -0.075 0.102 0.159 0.203 sum -1.235 14.561 23.477 27.653 Atomic orbital electron populations 1.21867 0.93158 1.03225 1.01579 1.20590 0.97230 0.95012 0.92418 1.22080 1.01751 0.94431 1.02615 1.21395 0.99282 0.96183 0.83461 1.55759 1.52898 1.56269 1.23389 1.05541 0.74469 0.78669 0.72537 1.93557 1.74828 1.64594 1.62927 1.93540 1.31546 1.86331 1.84295 1.30285 1.11427 1.20457 1.09417 1.19407 0.96205 1.00139 0.88881 1.20861 1.36010 0.93254 1.05637 0.90380 1.24986 0.95509 0.94812 0.97828 1.69882 1.46048 1.11277 1.26193 0.86922 0.81167 0.81249 0.81086 1.19670 1.20792 1.18626 1.21649 0.92979 0.83575 0.94390 1.86538 1.76462 1.22319 1.49852 1.22395 1.02202 1.00267 0.94056 1.22246 0.96613 1.02127 0.98796 1.22667 0.93886 0.97787 0.88010 1.88008 1.74567 1.53347 1.13633 1.23594 0.93702 0.99440 0.88430 0.92406 0.92325 0.91061 0.91804 0.91311 0.91996 0.90341 0.90275 0.75379 0.85658 0.85478 0.94983 0.95397 0.92406 0.77308 0.90453 0.90083 0.90818 0.90439 0.88667 0.93042 0.91685 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.81 37.16 0.29 -0.87 16 2 C -0.05 -0.44 0.17 -154.51 -0.03 -0.47 16 3 C -0.15 -1.18 7.61 37.16 0.28 -0.89 16 4 C 0.12 1.38 4.53 -4.04 -0.02 1.36 16 5 N -1.12 -13.77 5.22 -10.61 -0.06 -13.82 16 6 S 2.59 43.81 5.46 -107.50 -0.59 43.22 16 7 O -0.97 -19.00 18.08 -57.54 -1.04 -20.04 16 8 O -0.97 -18.79 17.50 -57.54 -1.01 -19.80 16 9 C -0.58 -10.82 6.01 37.15 0.22 -10.60 16 10 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 11 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 15 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 19 C 0.12 0.94 0.25 -90.48 -0.02 0.92 16 20 O -0.54 -5.06 11.63 -42.72 -0.50 -5.56 16 21 C -0.15 -0.94 4.31 -26.55 -0.11 -1.05 16 22 C -0.16 -0.84 5.82 -26.59 -0.15 -1.00 16 23 C 0.05 0.33 6.84 37.20 0.25 0.59 16 24 O -0.38 -3.48 10.34 -42.72 -0.44 -3.92 16 25 C 0.03 0.22 5.09 37.21 0.19 0.41 16 26 H 0.06 0.40 6.52 -51.93 -0.34 0.06 16 27 H 0.06 0.46 6.60 -51.93 -0.34 0.12 16 28 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 30 H 0.07 0.56 7.20 -51.93 -0.37 0.18 16 31 H 0.06 0.38 6.37 -51.93 -0.33 0.04 16 32 H 0.08 0.91 6.04 -51.93 -0.31 0.60 16 33 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 34 H 0.41 4.23 6.44 -34.47 -0.22 4.01 16 35 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 36 H 0.13 2.17 8.14 -51.92 -0.42 1.74 16 37 H 0.03 0.77 7.20 -51.92 -0.37 0.40 16 38 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.38 2.81 7.07 45.56 0.32 3.13 16 41 H 0.08 0.43 6.29 -51.93 -0.33 0.10 16 42 H 0.08 0.51 6.63 -51.93 -0.34 0.16 16 43 H 0.07 0.39 6.94 -51.93 -0.36 0.03 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.52 6.31 -51.93 -0.33 0.19 16 48 H 0.11 1.08 6.57 -51.93 -0.34 0.74 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -35.57 370.51 -8.47 -44.04 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.90 Total: 4.73 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 0.36 Total: -24.91 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.72 Total: -40.39 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.99 Total: -49.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 43.81 SS G_CDS: -0.59 Total: 43.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.57 -8.47 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595365638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.961 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds