Wall clock time and date at job start Tue Mar 31 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 C 1.53001 * 109.47110 * 239.99812 * 2 1 3 5 5 N 1.46505 * 109.46893 * 59.99962 * 4 2 1 6 6 S 1.65604 * 119.99777 * 164.99845 * 5 4 2 7 7 O 1.42102 * 104.27419 * 181.07359 * 6 5 4 8 8 O 1.42098 * 104.27782 * 308.92891 * 6 5 4 9 9 C 1.81391 * 104.45053 * 65.00384 * 6 5 4 10 10 C 1.52993 * 109.47397 * 179.97438 * 9 6 5 11 11 C 1.50704 * 109.47620 * 179.97438 * 10 9 6 12 12 H 1.08001 * 119.99284 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00221 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99882 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00107 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47228 * 90.00268 * 15 13 11 17 17 H 1.48500 * 109.47175 * 210.00703 * 15 13 11 18 18 H 1.48508 * 109.47163 * 330.00421 * 15 13 11 19 19 C 1.53003 * 109.47259 * 120.00272 * 2 1 3 20 20 O 1.42897 * 109.52232 * 59.87168 * 19 2 1 21 21 C 1.53173 * 109.57080 * 299.71426 * 19 2 1 22 22 C 1.53177 * 109.04588 * 183.08970 * 21 19 2 23 23 C 1.53092 * 109.16443 * 56.96276 * 22 21 19 24 24 O 1.42905 * 109.42428 * 302.41109 * 23 22 21 25 25 C 1.42901 * 114.09770 * 61.14988 * 24 23 22 26 26 H 1.08993 * 109.47042 * 299.99830 * 1 2 3 27 27 H 1.08995 * 109.47077 * 59.99949 * 1 2 3 28 28 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47294 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47085 * 300.00077 * 3 2 1 31 31 H 1.09002 * 109.46762 * 59.99842 * 3 2 1 32 32 H 1.08998 * 109.47549 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47482 * 300.00568 * 4 2 1 34 34 H 0.97001 * 120.00198 * 345.00283 * 5 4 2 35 35 H 1.09008 * 109.47051 * 299.99775 * 9 6 5 36 36 H 1.08999 * 109.47461 * 59.99427 * 9 6 5 37 37 H 1.09008 * 109.46910 * 299.99952 * 10 9 6 38 38 H 1.08999 * 109.47209 * 59.99363 * 10 9 6 39 39 H 0.96998 * 120.00181 * 179.97438 * 14 13 11 40 40 H 0.96705 * 113.99844 * 180.12388 * 20 19 2 41 41 H 1.08995 * 109.54947 * 302.95040 * 21 19 2 42 42 H 1.09003 * 109.54673 * 63.12717 * 21 19 2 43 43 H 1.09004 * 109.51365 * 297.06592 * 22 21 19 44 44 H 1.08998 * 109.53811 * 176.88037 * 22 21 19 45 45 H 1.09002 * 109.48343 * 182.42096 * 23 22 21 46 46 H 1.08999 * 109.47546 * 62.39689 * 23 22 21 47 47 H 1.09002 * 109.48282 * 58.82206 * 25 24 23 48 48 H 1.08997 * 109.48587 * 178.84728 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 16 2.2318 -0.3496 -3.9213 7 8 1.5364 0.5043 -4.8194 8 8 3.6281 -0.2020 -3.7029 9 6 1.8180 -2.0858 -4.2447 10 6 2.3977 -2.5049 -5.5971 11 6 2.0545 -3.9476 -5.8656 12 1 1.4807 -4.5094 -5.1434 13 6 2.4740 -4.5504 -7.0325 14 7 2.1749 -5.8095 -7.2664 15 14 3.4670 -3.5787 -8.2810 16 1 4.9144 -3.7199 -7.9804 17 1 3.1917 -4.0981 -9.6448 18 1 3.0844 -2.1455 -8.2107 19 6 2.0401 -0.7213 1.2492 20 8 1.5619 -2.0679 1.2518 21 6 1.5366 0.0031 2.5014 22 6 2.1167 -0.6822 3.7425 23 6 3.6447 -0.6847 3.6472 24 8 4.0448 -1.3462 2.4454 25 6 3.5710 -0.7220 1.2504 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 0.8300 0.6134 -2.3730 35 1 2.2396 -2.7123 -3.4585 36 1 0.7346 -2.2041 -4.2618 37 1 1.9758 -1.8784 -6.3831 38 1 3.4811 -2.3865 -5.5805 39 1 2.4697 -6.2335 -8.0875 40 1 1.8460 -2.5847 2.0182 41 1 1.8596 1.0437 2.4754 42 1 0.4480 -0.0401 2.5348 43 1 1.7534 -1.7086 3.7950 44 1 1.8083 -0.1397 4.6361 45 1 4.0617 -1.2093 4.5070 46 1 4.0097 0.3422 3.6358 47 1 3.9350 0.3046 1.2075 48 1 3.9351 -1.2732 0.3834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595365638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:54 Heat of formation + Delta-G solvation = -212.057522 kcal Electronic energy + Delta-G solvation = -28940.733797 eV Core-core repulsion = 24928.235759 eV Total energy + Delta-G solvation = -4012.498038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64662 -38.63456 -38.13780 -37.05042 -36.59000 -35.89685 -34.35399 -33.47800 -33.37753 -30.33796 -28.20380 -27.88675 -27.53397 -25.45681 -24.58736 -23.19009 -21.62270 -20.41380 -19.68319 -19.40054 -18.55278 -18.37068 -17.53063 -17.11224 -17.06490 -16.56431 -16.37767 -16.19407 -15.94067 -15.71088 -15.21140 -15.13423 -14.82440 -14.77720 -14.45022 -14.06787 -13.80839 -13.74005 -13.32033 -13.23468 -13.16828 -13.11938 -13.07098 -12.95654 -12.94253 -12.85232 -12.47654 -12.24759 -12.19067 -11.98442 -11.90424 -11.81054 -11.70617 -11.61513 -11.30010 -11.28603 -10.94278 -10.84629 -10.33528 -10.10841 -8.36644 -6.42650 -0.70618 1.32331 1.33570 1.44229 1.79774 2.29655 2.73798 2.87753 2.97157 3.17606 3.22856 3.49570 3.66996 3.78127 3.88119 3.97709 3.98273 4.06888 4.09715 4.13448 4.28580 4.40956 4.47651 4.56063 4.59464 4.69641 4.74524 4.76174 4.82213 4.85436 4.92020 5.01546 5.03071 5.06550 5.07263 5.12388 5.14358 5.21055 5.29794 5.40745 5.47195 5.52056 6.10825 6.16854 6.21121 6.63411 6.81649 7.21678 8.79117 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.003010 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.849517 B = 9300.527112 C = 9904.938068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.154 4.154 4 C 0.113 3.887 5 N -1.104 6.104 6 S 2.625 3.375 7 O -0.992 6.992 8 O -0.989 6.989 9 C -0.592 4.592 10 C -0.017 4.017 11 C -0.529 4.529 12 H 0.047 0.953 13 C 0.012 3.988 14 N -0.941 5.941 15 Si 0.927 3.073 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.248 1.248 19 C 0.118 3.882 20 O -0.561 6.561 21 C -0.147 4.147 22 C -0.155 4.155 23 C 0.047 3.953 24 O -0.398 6.398 25 C 0.023 3.977 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.424 0.576 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.270 0.730 40 H 0.384 0.616 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 16.394 26.013 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 C -0.211 4.211 4 C -0.013 4.013 5 N -0.867 5.867 6 S 2.720 3.280 7 O -0.982 6.982 8 O -0.979 6.979 9 C -0.723 4.723 10 C -0.056 4.056 11 C -0.568 4.568 12 H 0.066 0.934 13 C -0.186 4.186 14 N -0.580 5.580 15 Si 0.749 3.251 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.172 1.172 19 C 0.076 3.924 20 O -0.369 6.369 21 C -0.185 4.185 22 C -0.193 4.193 23 C -0.029 4.029 24 O -0.318 6.318 25 C -0.054 4.054 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.262 0.738 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.202 16.794 24.810 29.983 hybrid contribution -0.102 -0.673 -0.160 0.699 sum -1.304 16.121 24.650 29.482 Atomic orbital electron populations 1.21875 0.92592 1.02639 1.02700 1.20596 0.97619 0.95472 0.91233 1.22123 1.01681 0.93657 1.03641 1.21603 0.99225 0.96398 0.84039 1.55290 1.53112 1.56217 1.22057 1.04313 0.73696 0.77040 0.72916 1.93520 1.75222 1.64752 1.64700 1.93513 1.33231 1.86179 1.84948 1.30312 1.12111 1.22935 1.06944 1.19368 0.96761 0.97496 0.91937 1.21187 1.35176 0.95404 1.04993 0.93450 1.25898 0.96798 0.95786 1.00113 1.70012 1.47751 1.13073 1.27203 0.85995 0.79994 0.80396 0.78671 1.18477 1.19854 1.17202 1.21669 0.92389 0.83292 0.95068 1.86513 1.76664 1.23173 1.50535 1.22370 1.02324 1.00602 0.93189 1.22222 0.95713 1.02279 0.99086 1.22870 0.94752 0.98190 0.87121 1.87975 1.75063 1.54217 1.14506 1.23565 0.94321 0.99499 0.88004 0.90611 0.91929 0.92483 0.92049 0.91541 0.89780 0.90780 0.90693 0.73788 0.84603 0.84277 0.94863 0.95014 0.92101 0.76606 0.89330 0.89765 0.90983 0.88616 0.87648 0.92266 0.90790 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.81 71.98 0.56 -1.46 16 2 C -0.05 -0.74 0.17 -52.18 -0.01 -0.75 16 3 C -0.15 -2.00 7.61 71.98 0.55 -1.46 16 4 C 0.11 2.43 4.53 86.38 0.39 2.82 16 5 N -1.10 -25.42 5.22 -187.48 -0.98 -26.40 16 6 S 2.63 85.86 5.46 -56.49 -0.31 85.55 16 7 O -0.99 -37.49 18.08 -127.65 -2.31 -39.80 16 8 O -0.99 -37.38 17.50 -127.65 -2.23 -39.62 16 9 C -0.59 -21.79 6.01 71.98 0.43 -21.35 16 10 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 11 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 12 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 13 C 0.01 0.73 5.47 84.66 0.46 1.20 16 14 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 15 Si 0.93 44.41 27.47 68.60 1.88 46.30 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 19 C 0.12 1.73 0.25 -10.70 0.00 1.72 16 20 O -0.56 -10.00 11.63 -141.82 -1.65 -11.65 16 21 C -0.15 -1.43 4.31 30.71 0.13 -1.30 16 22 C -0.16 -1.25 5.82 30.68 0.18 -1.08 16 23 C 0.05 0.49 6.84 72.01 0.49 0.99 16 24 O -0.40 -7.00 10.34 -141.82 -1.47 -8.47 16 25 C 0.02 0.39 5.09 72.01 0.37 0.75 16 26 H 0.08 0.82 6.52 -2.39 -0.02 0.80 16 27 H 0.06 0.83 6.60 -2.39 -0.02 0.82 16 28 H 0.06 1.00 7.68 -2.39 -0.02 0.98 16 29 H 0.06 0.84 6.38 -2.39 -0.02 0.83 16 30 H 0.07 0.90 7.20 -2.38 -0.02 0.89 16 31 H 0.08 0.73 6.37 -2.39 -0.02 0.71 16 32 H 0.07 1.69 6.04 -2.39 -0.01 1.67 16 33 H 0.07 1.69 7.69 -2.39 -0.02 1.67 16 34 H 0.42 7.86 6.44 -96.74 -0.62 7.24 16 35 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 36 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 37 H 0.03 1.57 7.20 -2.38 -0.02 1.55 16 38 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.38 5.51 7.07 -74.05 -0.52 4.98 16 41 H 0.09 0.67 6.29 -2.39 -0.02 0.66 16 42 H 0.08 0.80 6.63 -2.39 -0.02 0.78 16 43 H 0.07 0.62 6.94 -2.38 -0.02 0.60 16 44 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 1.07 6.31 -2.39 -0.02 1.06 16 48 H 0.09 1.81 6.57 -2.39 -0.02 1.79 16 Total: -1.00 -76.63 370.51 -3.05 -79.68 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.22 Total: 23.62 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 3.92 Total: -50.83 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -0.68 Total: -84.78 kcal Atomic # 8 Polarization: -91.88 SS G_CDS: -7.66 Total: -99.54 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 16 Polarization: 85.86 SS G_CDS: -0.31 Total: 85.55 kcal Total: -76.63 -3.05 -79.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595365638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.374 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds