Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47501 * 2 1 4 4 C 1.53002 * 109.47310 * 120.00010 * 2 1 3 5 5 C 1.53000 * 109.46854 * 64.99634 * 4 2 1 6 6 N 1.46499 * 109.46800 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00439 * 269.99847 * 6 5 4 8 8 C 1.50701 * 109.47764 * 270.00789 * 7 6 5 9 9 H 1.08003 * 119.99516 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00162 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00302 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99653 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47093 * 60.00079 * 12 10 8 14 14 H 1.48500 * 109.46876 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47318 * 300.00106 * 12 10 8 16 16 C 1.39711 * 120.00078 * 90.00383 * 6 5 4 17 17 C 1.39032 * 120.00149 * 0.24766 * 16 6 5 18 18 C 1.38206 * 120.21829 * 180.25493 * 17 16 6 19 19 C 1.38024 * 120.22662 * 359.49530 * 18 17 16 20 20 N 1.48015 * 119.99708 * 180.22973 * 19 18 17 21 21 O 1.21799 * 120.00376 * 353.43729 * 20 19 18 22 22 O 1.21801 * 120.00097 * 173.43893 * 20 19 18 23 23 C 1.39572 * 120.00484 * 0.25091 * 19 18 17 24 24 C 1.47867 * 120.11061 * 180.02562 * 23 19 18 25 25 N 1.34769 * 120.00407 * 124.66144 * 24 23 19 26 26 O 1.21554 * 119.99737 * 304.66382 * 24 23 19 27 27 C 1.38640 * 120.00805 * 179.97438 * 16 6 5 28 28 H 1.09000 * 109.47225 * 59.99628 * 1 2 3 29 29 H 1.08994 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46864 * 300.00410 * 1 2 3 31 31 H 1.08998 * 109.47201 * 239.99904 * 2 1 3 32 32 H 1.09002 * 109.47467 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46660 * 300.00365 * 3 2 1 34 34 H 1.08998 * 109.46972 * 59.99764 * 3 2 1 35 35 H 1.09002 * 109.46816 * 304.99954 * 4 2 1 36 36 H 1.08996 * 109.47067 * 185.00132 * 4 2 1 37 37 H 1.09002 * 109.47148 * 60.00523 * 5 4 2 38 38 H 1.08996 * 109.47690 * 300.00116 * 5 4 2 39 39 H 1.09004 * 109.47194 * 30.00351 * 7 6 5 40 40 H 1.09001 * 109.47625 * 150.00263 * 7 6 5 41 41 H 0.97003 * 120.00102 * 179.97438 * 11 10 8 42 42 H 1.08000 * 119.89130 * 0.02584 * 17 16 6 43 43 H 1.07994 * 119.88162 * 179.76222 * 18 17 16 44 44 H 0.97001 * 120.00117 * 0.02562 * 25 24 23 45 45 H 0.97000 * 120.00491 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.11024 * 0.02562 * 27 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3844 7 6 3.4512 -3.5040 2.3831 8 6 3.3407 -4.9312 1.9120 9 1 2.3774 -5.3374 1.6410 10 6 4.4695 -5.7184 1.8269 11 7 5.6426 -5.2237 2.1564 12 14 4.3323 -7.4877 1.2436 13 1 3.7723 -7.5136 -0.1317 14 1 5.6789 -8.1138 1.2410 15 1 3.4368 -8.2421 2.1569 16 6 1.3216 -2.9550 3.5267 17 6 0.0589 -2.3730 3.5263 18 6 -0.7355 -2.4341 4.6555 19 6 -0.2851 -3.0823 5.7878 20 7 -1.1422 -3.1491 6.9926 21 8 -2.1920 -2.5325 7.0282 22 8 -0.7977 -3.8206 7.9486 23 6 0.9788 -3.6744 5.7968 24 6 1.4635 -4.3699 7.0083 25 7 1.8707 -5.6524 6.9317 26 8 1.4946 -3.7850 8.0734 27 6 1.7829 -3.6088 4.6588 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2951 37 1 2.0698 -2.6550 0.3002 38 1 0.5489 -2.2724 1.1421 39 1 4.1090 -2.9503 1.7132 40 1 3.8616 -3.4854 3.3927 41 1 6.4366 -5.7777 2.0968 42 1 -0.3008 -1.8682 2.6418 43 1 -1.7139 -1.9768 4.6505 44 1 1.8462 -6.1191 6.0817 45 1 2.1890 -6.1085 7.7264 46 1 2.7617 -4.0651 4.6600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596169492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -30.824114 kcal Electronic energy + Delta-G solvation = -29621.974638 eV Core-core repulsion = 25514.184270 eV Total energy + Delta-G solvation = -4107.790368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70000 -39.94042 -38.79725 -37.16402 -35.96457 -35.53532 -33.52026 -33.05846 -31.29413 -30.84586 -29.30600 -27.30543 -27.22875 -25.50432 -24.36999 -23.06668 -22.70956 -21.26414 -20.15918 -19.92241 -18.80752 -18.14142 -17.41129 -17.06096 -16.83147 -16.67276 -16.29932 -15.78413 -15.20081 -14.85642 -14.55203 -14.41800 -14.12394 -13.78191 -13.63290 -13.40129 -13.24893 -12.99590 -12.68729 -12.53369 -12.36177 -11.97306 -11.81645 -11.51264 -11.32203 -11.17213 -11.04449 -11.02355 -10.88524 -10.70584 -10.63664 -10.62842 -10.58269 -10.32143 -10.22445 -9.88451 -9.57821 -9.43070 -9.16442 -8.80070 -7.23645 -6.38919 -4.51080 0.33386 1.10281 1.88871 1.98980 2.85841 3.07606 3.15014 3.15617 3.34683 3.55673 3.72985 4.13456 4.64266 4.74824 4.80740 4.83151 4.86064 4.92354 5.07104 5.12022 5.22205 5.29308 5.43107 5.52613 5.59390 5.64430 5.68891 5.75143 5.76618 5.81490 5.95108 5.99467 6.05288 6.11229 6.18616 6.26802 6.34900 6.41065 6.63114 6.89312 6.91493 6.95472 7.41770 7.44779 7.62700 7.73400 7.76881 8.19700 8.41984 8.55670 9.17785 10.65156 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007002 B = 0.005141 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3997.729768 B = 5445.282659 C = 8655.163520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.113 3.887 6 N -0.576 5.576 7 C 0.240 3.760 8 C -0.546 4.546 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.283 3.717 17 C -0.208 4.208 18 C -0.004 4.004 19 C -0.101 4.101 20 N 0.045 4.955 21 O -0.204 6.204 22 O -0.157 6.157 23 C -0.022 4.022 24 C 0.568 3.432 25 N -0.842 5.842 26 O -0.512 6.512 27 C -0.157 4.157 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.269 0.731 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.406 0.594 45 H 0.406 0.594 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 5.881 -3.784 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.173 4.173 5 C -0.010 4.010 6 N -0.274 5.274 7 C 0.121 3.879 8 C -0.584 4.584 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.168 3.832 17 C -0.232 4.232 18 C -0.024 4.024 19 C -0.189 4.189 20 N 0.558 4.442 21 O -0.409 6.409 22 O -0.374 6.374 23 C -0.028 4.028 24 C 0.351 3.649 25 N -0.406 5.406 26 O -0.386 6.386 27 C -0.180 4.180 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.235 0.765 45 H 0.237 0.763 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.460 6.442 -3.974 9.951 hybrid contribution 0.033 -1.444 -0.278 1.471 sum -6.427 4.998 -4.251 9.185 Atomic orbital electron populations 1.21925 0.95377 1.01846 1.01677 1.21060 0.95736 0.96181 0.98380 1.21826 1.01091 0.95946 1.01495 1.22108 1.01999 0.95289 0.97891 1.21660 0.99413 0.91566 0.88395 1.47735 1.17779 1.52793 1.09110 1.19571 0.76504 0.93035 0.98806 1.21394 0.94285 0.96111 1.46606 0.91954 1.24942 0.94990 0.98913 0.94780 1.69897 0.98614 1.37177 1.46792 0.86542 0.77462 0.83906 0.79510 1.20090 1.21011 1.19937 1.18118 0.89405 0.88580 0.87144 1.20711 0.94267 1.08853 0.99350 1.20507 0.99814 0.92580 0.89502 1.20461 0.93758 1.16568 0.88120 1.43419 1.00346 0.98433 1.02037 1.94444 1.12457 1.45487 1.88477 1.94585 1.76491 1.39073 1.27210 1.19398 0.92103 0.96745 0.94549 1.17908 0.77011 0.82423 0.87558 1.43663 1.68379 1.13211 1.15389 1.90860 1.53072 1.65995 1.28681 1.21007 1.02169 1.04874 0.89964 0.92865 0.92412 0.92631 0.90977 0.92654 0.92876 0.92787 0.91753 0.91242 0.89551 0.90920 0.94060 0.94256 0.92153 0.84045 0.83515 0.76511 0.76298 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.15 0.33 -0.93 16 2 C -0.09 -0.89 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.30 9.19 37.16 0.34 -0.95 16 4 C -0.13 -1.54 5.01 -26.73 -0.13 -1.68 16 5 C 0.11 1.48 4.92 -4.04 -0.02 1.46 16 6 N -0.58 -9.40 2.59 -173.16 -0.45 -9.85 16 7 C 0.24 4.89 4.91 -5.20 -0.03 4.86 16 8 C -0.55 -12.45 9.39 -34.44 -0.32 -12.78 16 9 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 10 C 0.07 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -22.51 13.29 55.43 0.74 -21.77 16 12 Si 0.90 18.79 29.54 -169.99 -5.02 13.77 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 C 0.28 4.45 6.55 -83.82 -0.55 3.91 16 17 C -0.21 -2.79 9.21 -39.30 -0.36 -3.15 16 18 C 0.00 -0.05 9.54 -39.67 -0.38 -0.43 16 19 C -0.10 -1.73 6.86 -79.53 -0.55 -2.27 16 20 N 0.05 0.87 4.45 34.17 0.15 1.02 16 21 O -0.20 -3.82 18.46 -29.46 -0.54 -4.37 16 22 O -0.16 -3.24 14.98 -37.09 -0.56 -3.80 16 23 C -0.02 -0.38 5.64 -104.99 -0.59 -0.97 16 24 C 0.57 9.94 6.11 -12.32 -0.08 9.86 16 25 N -0.84 -11.32 8.85 30.53 0.27 -11.05 16 26 O -0.51 -10.66 15.60 -18.79 -0.29 -10.96 16 27 C -0.16 -2.61 8.91 -38.97 -0.35 -2.96 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.07 0.82 4.60 -51.93 -0.24 0.58 16 39 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.04 0.86 6.19 -51.93 -0.32 0.54 16 41 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.14 1.54 6.12 -52.49 -0.32 1.22 16 43 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 44 H 0.41 4.81 8.80 -40.82 -0.36 4.46 16 45 H 0.41 4.63 8.93 -40.82 -0.36 4.27 16 46 H 0.16 2.83 6.14 -52.49 -0.32 2.50 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -28.88 384.99 -9.37 -38.25 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.43 Total: 8.60 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.04 Total: -5.66 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.71 Total: -41.65 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.39 Total: -19.12 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.88 -9.37 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596169492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.430 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds