Wall clock time and date at job start Tue Mar 31 2020 18:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 H 1.09004 * 109.47267 * 305.00360 * 3 2 1 5 5 C 1.50700 * 109.47451 * 184.99798 * 3 2 1 6 6 H 1.07997 * 119.99807 * 240.00198 * 5 3 2 7 7 C 1.37879 * 119.99843 * 59.99785 * 5 3 2 8 8 N 1.31516 * 119.99975 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00085 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46745 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47028 * 119.99971 * 9 7 5 12 12 H 1.48487 * 109.47280 * 240.00486 * 9 7 5 13 13 N 1.46501 * 109.46958 * 64.99642 * 3 2 1 14 14 C 1.34774 * 120.00331 * 275.00010 * 13 3 2 15 15 O 1.21357 * 120.00062 * 0.02562 * 14 13 3 16 16 C 1.49374 * 120.00009 * 180.02562 * 14 13 3 17 17 O 1.21355 * 120.00426 * 359.97438 * 16 14 13 18 18 N 1.34783 * 119.99503 * 180.28116 * 16 14 13 19 19 C 1.39410 * 119.99718 * 174.46068 * 18 16 14 20 20 C 1.39605 * 120.83068 * 327.24148 * 19 18 16 21 21 C 1.37799 * 119.19409 * 179.72766 * 20 19 18 22 22 N 1.32059 * 120.91199 * 0.55427 * 21 20 19 23 23 C 1.32347 * 121.82755 * 359.71994 * 22 21 20 24 24 O 1.35684 * 119.64448 * 179.97438 * 23 22 21 25 25 C 1.42893 * 117.00148 * 0.02562 * 24 23 22 26 26 C 1.53001 * 109.47190 * 89.99962 * 25 24 23 27 27 C 1.52996 * 109.47365 * 210.00336 * 25 24 23 28 28 C 1.38659 * 120.70667 * 359.97438 * 23 22 21 29 29 H 1.09001 * 109.47507 * 300.00327 * 1 2 3 30 30 H 1.09006 * 109.46914 * 59.99502 * 1 2 3 31 31 H 1.08995 * 109.47633 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47098 * 239.99930 * 2 1 3 33 33 H 1.09006 * 109.46559 * 120.00088 * 2 1 3 34 34 H 0.96993 * 120.00234 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99733 * 95.00317 * 13 3 2 36 36 H 0.97001 * 120.00363 * 354.44997 * 18 16 14 37 37 H 1.08000 * 120.40616 * 359.97438 * 20 19 18 38 38 H 1.08005 * 119.54919 * 180.27273 * 21 20 19 39 39 H 1.09000 * 109.47270 * 330.00260 * 25 24 23 40 40 H 1.08994 * 109.47206 * 300.00478 * 26 25 24 41 41 H 1.09000 * 109.46770 * 59.99992 * 26 25 24 42 42 H 1.09000 * 109.47280 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47465 * 60.00031 * 27 25 24 44 44 H 1.09000 * 109.47589 * 180.02562 * 27 25 24 45 45 H 1.09008 * 109.46668 * 299.99939 * 27 25 24 46 46 H 1.07999 * 120.49053 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5987 1.5461 -0.1941 11 1 6.4970 -0.5178 -1.4628 12 1 6.3991 1.6164 -2.6100 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6320 0.4338 16 6 0.0403 3.3328 2.6431 17 8 0.8153 3.3648 3.5764 18 7 -1.1791 3.8948 2.7601 19 6 -1.5917 4.4161 3.9855 20 6 -1.1727 3.8394 5.1858 21 6 -1.5965 4.3856 6.3779 22 7 -2.3981 5.4350 6.3963 23 6 -2.8230 6.0084 5.2818 24 8 -3.6463 7.0846 5.3524 25 6 -4.0089 7.5394 6.6576 26 6 -2.9922 8.5777 7.1365 27 6 -5.4006 8.1732 6.6085 28 6 -2.4357 5.5212 4.0427 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8901 34 1 3.8292 -0.0606 -2.9502 35 1 2.2720 2.1231 1.9978 36 1 -1.7696 3.9368 1.9917 37 1 -0.5211 2.9781 5.1804 38 1 -1.2723 3.9468 7.3099 39 1 -4.0182 6.6952 7.3470 40 1 -2.0008 8.1262 7.1715 41 1 -2.9829 9.4219 6.4471 42 1 -3.2691 8.9250 8.1319 43 1 -6.1248 7.4335 6.2674 44 1 -5.6770 8.5206 7.6040 45 1 -5.3912 9.0174 5.9190 46 1 -2.7849 5.9915 3.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615215589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:52 Heat of formation + Delta-G solvation = -75.119848 kcal Electronic energy + Delta-G solvation = -28330.875400 eV Core-core repulsion = 24221.164225 eV Total energy + Delta-G solvation = -4109.711175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27757 -40.30826 -38.81445 -37.97310 -35.76338 -35.07331 -33.56207 -32.50127 -31.15182 -31.02672 -30.30393 -27.58728 -27.38451 -25.40913 -23.76492 -23.55381 -22.75266 -21.27706 -20.50193 -19.59210 -19.01456 -18.49335 -17.10480 -16.55555 -16.31319 -16.22045 -15.88146 -15.65489 -15.35092 -15.20492 -14.67538 -14.40718 -14.29256 -13.99905 -13.93797 -13.44209 -13.37426 -12.80652 -12.65883 -12.63391 -12.44966 -12.21345 -12.16560 -11.67471 -11.50143 -11.36443 -11.27555 -11.17647 -11.04110 -10.94990 -10.91920 -10.41484 -10.32209 -9.87606 -9.75582 -9.20368 -9.17836 -8.97061 -8.65562 -8.62350 -8.12204 -6.22441 -4.32306 0.81189 1.05125 1.78641 2.33224 2.91032 3.19657 3.28160 3.31516 3.48033 3.67695 3.91576 4.10707 4.28032 4.55193 4.66291 4.71589 4.85898 4.92032 4.97229 5.02694 5.10026 5.20977 5.24260 5.40750 5.46022 5.51441 5.64100 5.75258 5.86599 5.87589 5.94853 6.25719 6.30108 6.37763 6.49036 6.84865 6.89140 7.03284 7.06470 7.08240 7.20664 7.40270 7.57048 7.67686 7.69332 7.75967 8.02197 8.33990 8.53545 8.78680 9.34771 10.82971 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.002070 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.194157 B =13521.538134 C =13871.046606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.526 6.526 16 C 0.510 3.490 17 O -0.496 6.496 18 N -0.649 5.649 19 C 0.232 3.768 20 C -0.214 4.214 21 C 0.158 3.842 22 N -0.554 5.554 23 C 0.342 3.658 24 O -0.302 6.302 25 C 0.082 3.918 26 C -0.169 4.169 27 C -0.151 4.151 28 C -0.223 4.223 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.427 0.573 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.059 10.416 16.207 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.405 6.405 16 C 0.293 3.707 17 O -0.368 6.368 18 N -0.297 5.297 19 C 0.128 3.872 20 C -0.236 4.236 21 C 0.003 3.997 22 N -0.279 5.279 23 C 0.163 3.837 24 O -0.209 6.209 25 C 0.026 3.974 26 C -0.226 4.226 27 C -0.208 4.208 28 C -0.246 4.246 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.266 0.734 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.345 10.752 16.516 24.376 hybrid contribution 1.291 -0.339 -0.766 1.539 sum -13.054 10.413 15.750 22.955 Atomic orbital electron populations 1.21859 0.98282 0.98500 1.01008 1.21971 0.92654 0.99328 1.02861 1.19057 0.94895 0.89427 0.79964 0.92654 1.21232 0.90229 1.39460 1.06630 0.91675 1.24878 0.98896 0.94567 0.95230 1.69886 1.35227 1.37410 1.09311 0.86346 0.84443 0.77862 0.78223 1.19614 1.20784 1.20811 1.46486 1.13194 1.52366 1.19315 1.19488 0.84671 0.81684 0.86836 1.90759 1.51050 1.59497 1.39161 1.21148 0.81132 0.78374 0.90024 1.90750 1.50302 1.55305 1.40453 1.43218 1.17628 1.57241 1.11570 1.17654 0.92768 0.90746 0.86028 1.22032 1.06017 1.04145 0.91433 1.22246 0.90232 0.89474 0.97768 1.67282 1.16898 1.13716 1.30009 1.19331 0.88719 0.86633 0.89049 1.86283 1.60634 1.41851 1.32160 1.22336 0.94627 0.97439 0.83029 1.22218 0.99794 0.99122 1.01496 1.21911 0.94591 1.01439 1.02865 1.20652 1.07102 0.98970 0.97896 0.94671 0.92907 0.95399 0.87769 0.94604 0.92444 0.76327 0.73360 0.83289 0.81901 0.89155 0.91875 0.92038 0.91162 0.91814 0.90527 0.91648 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.22 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.07 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.67 11.29 55.43 0.63 -23.04 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 N -0.66 -13.41 5.01 -55.39 -0.28 -13.69 16 14 C 0.50 9.22 6.46 -11.62 -0.08 9.14 16 15 O -0.53 -10.66 13.62 5.49 0.07 -10.58 16 16 C 0.51 8.11 7.65 -11.62 -0.09 8.02 16 17 O -0.50 -8.44 14.18 5.49 0.08 -8.36 16 18 N -0.65 -8.50 5.33 -10.15 -0.05 -8.55 16 19 C 0.23 2.92 6.32 -83.56 -0.53 2.39 16 20 C -0.21 -2.61 8.73 -39.23 -0.34 -2.95 16 21 C 0.16 1.69 11.17 -17.61 -0.20 1.49 16 22 N -0.55 -6.44 8.64 -13.41 -0.12 -6.56 16 23 C 0.34 4.09 7.45 -17.17 -0.13 3.96 16 24 O -0.30 -3.36 9.76 -18.76 -0.18 -3.55 16 25 C 0.08 0.71 3.11 -26.73 -0.08 0.63 16 26 C -0.17 -1.33 9.53 37.16 0.35 -0.98 16 27 C -0.15 -0.97 9.56 37.16 0.36 -0.61 16 28 C -0.22 -2.59 9.99 -39.08 -0.39 -2.98 16 29 H 0.03 0.70 5.64 -51.93 -0.29 0.40 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 35 H 0.40 7.59 8.01 -40.82 -0.33 7.27 16 36 H 0.43 4.92 8.30 -40.82 -0.34 4.58 16 37 H 0.15 1.90 6.48 -52.49 -0.34 1.56 16 38 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -28.76 382.97 -7.14 -35.91 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.54 Total: 11.22 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.50 Total: 6.33 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.18 Total: -51.84 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.03 Total: -22.49 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.76 -7.14 -35.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615215589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.214 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds