Wall clock time and date at job start Tue Mar 31 2020 18:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46826 * 2 1 4 4 H 1.08999 * 109.47548 * 56.27474 * 3 2 1 5 5 C 1.50701 * 109.46832 * 176.27282 * 3 2 1 6 6 H 1.08005 * 120.00313 * 114.28381 * 5 3 2 7 7 C 1.37881 * 120.00007 * 294.29068 * 5 3 2 8 8 N 1.31510 * 120.00346 * 155.61844 * 7 5 3 9 9 Si 1.86800 * 119.99887 * 335.60895 * 7 5 3 10 10 H 1.48497 * 109.47180 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47401 * 300.00789 * 9 7 5 12 12 H 1.48501 * 109.46929 * 60.00293 * 9 7 5 13 13 N 1.46497 * 109.47194 * 296.26819 * 3 2 1 14 14 C 1.34786 * 119.99370 * 85.00589 * 13 3 2 15 15 O 1.21353 * 120.00377 * 359.97438 * 14 13 3 16 16 C 1.49376 * 119.99264 * 179.97438 * 14 13 3 17 17 O 1.21353 * 120.00360 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99408 * 179.97438 * 16 14 13 19 19 C 1.39404 * 119.99915 * 184.22728 * 18 16 14 20 20 C 1.39610 * 120.83665 * 324.03896 * 19 18 16 21 21 C 1.37794 * 119.19872 * 179.79382 * 20 19 18 22 22 N 1.32053 * 120.91317 * 0.49280 * 21 20 19 23 23 C 1.32346 * 121.82914 * 359.73712 * 22 21 20 24 24 O 1.35682 * 119.64575 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00123 * 0.02562 * 24 23 22 26 26 C 1.53004 * 109.47298 * 89.99586 * 25 24 23 27 27 C 1.52998 * 109.47160 * 210.00022 * 25 24 23 28 28 C 1.38666 * 120.70739 * 0.02562 * 23 22 21 29 29 H 1.08998 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47123 * 300.00002 * 1 2 3 31 31 H 1.09006 * 109.46903 * 59.99904 * 1 2 3 32 32 H 1.08998 * 109.47123 * 239.99998 * 2 1 3 33 33 H 1.08997 * 109.47133 * 120.00010 * 2 1 3 34 34 H 0.97011 * 119.99816 * 354.95072 * 8 7 5 35 35 H 0.96999 * 120.00225 * 265.00190 * 13 3 2 36 36 H 0.97002 * 120.00473 * 4.23265 * 18 16 14 37 37 H 1.08006 * 120.39445 * 0.02562 * 20 19 18 38 38 H 1.08006 * 119.54497 * 180.23019 * 21 20 19 39 39 H 1.09004 * 109.47279 * 329.99751 * 25 24 23 40 40 H 1.09004 * 109.47215 * 179.97438 * 26 25 24 41 41 H 1.08993 * 109.47411 * 300.00433 * 26 25 24 42 42 H 1.09001 * 109.46341 * 60.00047 * 26 25 24 43 43 H 1.08998 * 109.47359 * 59.99675 * 27 25 24 44 44 H 1.09004 * 109.47542 * 180.02562 * 27 25 24 45 45 H 1.08997 * 109.46970 * 299.99657 * 27 25 24 46 46 H 1.07992 * 120.48917 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 0.8547 5 6 3.5442 1.4435 0.0924 6 1 4.1357 1.8100 -0.7336 7 6 4.1652 0.9765 1.2313 8 7 5.3988 0.5248 1.1695 9 14 3.2546 0.9856 2.8623 10 1 4.1357 0.4370 3.9243 11 1 2.8716 2.3781 3.2077 12 1 2.0325 0.1493 2.7515 13 7 1.6264 2.1067 -1.2386 14 6 0.4069 2.6744 -1.3239 15 8 -0.3486 2.6349 -0.3750 16 6 -0.0145 3.3521 -2.5866 17 8 0.7411 3.3919 -3.5353 18 7 -1.2341 3.9193 -2.6722 19 6 -1.6618 4.4741 -3.8774 20 6 -0.7641 5.1304 -4.7216 21 6 -1.2225 5.6626 -5.9070 22 7 -2.4952 5.5675 -6.2461 23 6 -3.3799 4.9580 -5.4731 24 8 -4.6769 4.8865 -5.8648 25 6 -5.0105 5.4883 -7.1172 26 6 -4.8579 4.4557 -8.2360 27 6 -6.4571 5.9847 -7.0752 28 6 -2.9955 4.3927 -4.2667 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8461 0.4516 0.3119 35 1 2.2302 2.1379 -1.9971 36 1 -1.8143 3.9416 -1.8951 37 1 0.2778 5.2166 -4.4504 38 1 -0.5322 6.1683 -6.5660 39 1 -4.3431 6.3293 -7.3055 40 1 -5.1128 4.9146 -9.1913 41 1 -3.8274 4.1020 -8.2659 42 1 -5.5254 3.6148 -8.0476 43 1 -6.5659 6.7203 -6.2783 44 1 -6.7118 6.4434 -8.0307 45 1 -7.1245 5.1438 -6.8870 46 1 -3.7204 3.8965 -3.6385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615215590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:55 Heat of formation + Delta-G solvation = -74.699181 kcal Electronic energy + Delta-G solvation = -28430.878149 eV Core-core repulsion = 24321.185215 eV Total energy + Delta-G solvation = -4109.692934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34371 -40.39826 -38.94088 -38.06372 -35.89124 -35.20520 -33.59595 -32.57335 -31.54931 -31.17638 -30.34771 -27.63890 -27.60182 -25.47714 -23.79382 -23.39362 -22.43407 -21.38046 -20.65022 -19.76651 -19.12107 -18.64142 -17.40449 -17.10508 -16.49641 -16.29798 -15.98479 -15.71997 -15.58805 -15.27237 -14.79633 -14.43754 -14.12380 -13.95930 -13.89658 -13.47266 -13.42351 -12.79502 -12.68533 -12.66526 -12.57966 -12.49622 -12.40347 -12.23137 -11.84322 -11.56452 -11.29895 -11.19992 -10.98597 -10.95387 -10.83032 -10.54811 -9.99298 -9.94914 -9.83911 -9.35719 -9.26023 -9.05211 -8.71075 -8.40519 -8.37100 -6.69742 -4.30835 0.75559 1.00950 1.65258 2.25725 2.85185 3.32961 3.37070 3.39113 3.54065 3.58770 3.82159 4.06479 4.36078 4.52081 4.63184 4.65712 4.80505 4.82191 4.91993 4.96492 5.00215 5.17614 5.19841 5.37843 5.42433 5.48302 5.60310 5.72008 5.83455 5.84474 5.90261 5.92369 5.96431 6.11514 6.33058 6.49971 6.63799 6.73036 6.81142 6.85670 7.03554 7.09538 7.21571 7.43887 7.60148 7.64679 8.11849 8.18822 8.39851 8.70428 9.35029 10.68960 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028608 B = 0.002157 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.522257 B =12979.609165 C =13386.344209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.248 3.752 4 H 0.046 0.954 5 C -0.631 4.631 6 H 0.066 0.934 7 C 0.049 3.951 8 N -0.883 5.883 9 Si 1.030 2.970 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.658 5.658 14 C 0.496 3.504 15 O -0.528 6.528 16 C 0.511 3.489 17 O -0.495 6.495 18 N -0.649 5.649 19 C 0.227 3.773 20 C -0.211 4.211 21 C 0.156 3.844 22 N -0.551 5.551 23 C 0.340 3.660 24 O -0.302 6.302 25 C 0.082 3.918 26 C -0.169 4.169 27 C -0.151 4.151 28 C -0.220 4.220 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.273 0.727 35 H 0.406 0.594 36 H 0.427 0.573 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.522 9.628 -14.750 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.064 0.936 5 C -0.668 4.668 6 H 0.084 0.916 7 C -0.160 4.160 8 N -0.514 5.514 9 Si 0.857 3.143 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.307 5.307 14 C 0.275 3.725 15 O -0.407 6.407 16 C 0.294 3.706 17 O -0.367 6.367 18 N -0.297 5.297 19 C 0.124 3.876 20 C -0.233 4.233 21 C 0.001 3.999 22 N -0.277 5.277 23 C 0.161 3.839 24 O -0.209 6.209 25 C 0.026 3.974 26 C -0.226 4.226 27 C -0.208 4.208 28 C -0.243 4.243 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.266 0.734 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.744 9.452 -13.721 25.835 hybrid contribution 0.223 0.036 -1.100 1.123 sum -19.521 9.488 -14.820 26.282 Atomic orbital electron populations 1.21909 0.97377 0.99319 1.01668 1.22284 0.93718 0.99315 1.02053 1.19263 0.95997 0.88526 0.81648 0.93589 1.21971 0.89096 1.49902 1.05851 0.91604 1.25633 0.96288 0.91671 1.02387 1.70862 1.13785 1.37112 1.29649 0.84223 0.76040 0.77690 0.76352 1.20700 1.20562 1.19789 1.46235 1.13547 1.52015 1.18925 1.19558 0.84404 0.81565 0.87019 1.90748 1.52454 1.59651 1.37845 1.21002 0.81323 0.78622 0.89659 1.90753 1.51242 1.56199 1.38526 1.43147 1.18261 1.56092 1.12163 1.17647 0.92185 0.91147 0.86661 1.22143 1.02329 1.01858 0.97013 1.22279 0.90164 0.93755 0.93668 1.67283 1.03989 1.21598 1.34809 1.19338 0.84663 0.90630 0.89244 1.86284 1.21103 1.74212 1.39329 1.22343 0.97147 0.96507 0.81434 1.22220 1.02918 0.99510 0.97990 1.21912 0.94302 1.01786 1.02806 1.20688 0.96027 1.09288 0.98294 0.94652 0.92656 0.93837 0.92720 0.91241 0.91709 0.75834 0.73367 0.83001 0.81856 0.89149 0.91132 0.91887 0.92029 0.91812 0.90502 0.91643 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.49 37.16 0.32 -2.42 16 2 C -0.13 -2.86 5.36 -26.73 -0.14 -3.01 16 3 C 0.25 5.63 1.85 -69.08 -0.13 5.50 16 4 H 0.05 1.11 6.14 -51.93 -0.32 0.79 16 5 C -0.63 -16.42 8.94 -34.44 -0.31 -16.73 16 6 H 0.07 1.81 7.96 -52.48 -0.42 1.40 16 7 C 0.05 1.32 5.20 -17.82 -0.09 1.23 16 8 N -0.88 -25.37 13.70 55.43 0.76 -24.61 16 9 Si 1.03 23.86 26.51 -169.99 -4.51 19.35 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.89 6.17 56.52 0.35 -5.54 16 13 N -0.66 -12.97 5.00 -55.39 -0.28 -13.25 16 14 C 0.50 8.86 6.40 -11.62 -0.07 8.79 16 15 O -0.53 -10.05 13.61 5.49 0.07 -9.97 16 16 C 0.51 7.87 7.74 -11.62 -0.09 7.78 16 17 O -0.50 -8.26 14.04 5.49 0.08 -8.19 16 18 N -0.65 -8.13 5.33 -10.15 -0.05 -8.18 16 19 C 0.23 2.76 6.31 -83.56 -0.53 2.24 16 20 C -0.21 -2.52 8.76 -39.23 -0.34 -2.86 16 21 C 0.16 1.64 11.17 -17.62 -0.20 1.44 16 22 N -0.55 -6.28 8.64 -13.41 -0.12 -6.40 16 23 C 0.34 3.97 7.45 -17.17 -0.13 3.84 16 24 O -0.30 -3.28 9.76 -18.75 -0.18 -3.47 16 25 C 0.08 0.69 3.11 -26.73 -0.08 0.61 16 26 C -0.17 -1.30 9.53 37.16 0.35 -0.94 16 27 C -0.15 -0.94 9.56 37.16 0.36 -0.58 16 28 C -0.22 -2.48 9.99 -39.07 -0.39 -2.87 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.06 7.77 -51.93 -0.40 0.66 16 31 H 0.04 0.80 5.68 -51.93 -0.29 0.50 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.54 5.57 -51.93 -0.29 1.25 16 34 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 35 H 0.41 7.70 8.00 -40.82 -0.33 7.37 16 36 H 0.43 4.62 8.30 -40.82 -0.34 4.28 16 37 H 0.15 1.91 6.41 -52.48 -0.34 1.58 16 38 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.09 0.81 6.98 -51.93 -0.36 0.45 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -29.64 379.60 -6.51 -36.14 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.52 Total: 10.83 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.48 Total: 2.03 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.31 Total: -52.44 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.03 Total: -21.63 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.51 Total: 19.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.64 -6.51 -36.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615215590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.555 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds