Wall clock time and date at job start Tue Mar 31 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 C 1.53005 * 109.47168 * 119.99868 * 2 1 3 5 5 O 1.42907 * 109.46578 * 65.00150 * 4 2 1 6 6 C 1.35754 * 116.99654 * 180.02562 * 5 4 2 7 7 C 1.38903 * 119.61028 * 179.97438 * 6 5 4 8 8 C 1.38334 * 119.18407 * 179.72396 * 7 6 5 9 9 C 1.39357 * 118.42404 * 0.53580 * 8 7 6 10 10 N 1.40191 * 120.42539 * 179.76018 * 9 8 7 11 11 C 1.34785 * 119.99604 * 324.18369 * 10 9 8 12 12 O 1.21590 * 119.99963 * 4.67791 * 11 10 9 13 13 N 1.34771 * 119.99562 * 184.67839 * 11 10 9 14 14 C 1.47582 * 134.48845 * 179.97438 * 13 11 10 15 15 C 1.53940 * 86.11720 * 155.35998 * 14 13 11 16 16 O 1.42898 * 113.74655 * 269.15399 * 15 14 13 17 17 C 1.50702 * 113.74164 * 137.95132 * 15 14 13 18 18 H 1.07998 * 120.00120 * 5.06323 * 17 15 14 19 19 C 1.37883 * 120.00055 * 185.06386 * 17 15 14 20 20 N 1.31515 * 119.99955 * 12.35884 * 19 17 15 21 21 Si 1.86797 * 120.00117 * 192.36375 * 19 17 15 22 22 H 1.48500 * 109.47338 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46888 * 300.00261 * 21 19 17 24 24 H 1.48500 * 109.46987 * 59.99791 * 21 19 17 25 25 C 1.47576 * 134.49546 * 359.97438 * 13 11 10 26 26 C 1.38649 * 119.15703 * 359.48118 * 9 8 7 27 27 N 1.31949 * 120.73367 * 0.25688 * 26 9 8 28 28 H 1.08999 * 109.46815 * 60.00030 * 1 2 3 29 29 H 1.08995 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46790 * 300.00223 * 1 2 3 31 31 H 1.09003 * 109.47250 * 240.00153 * 2 1 3 32 32 H 1.08993 * 109.47331 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47278 * 300.00309 * 3 2 1 34 34 H 1.09003 * 109.46769 * 59.99859 * 3 2 1 35 35 H 1.08994 * 109.46974 * 305.00588 * 4 2 1 36 36 H 1.08995 * 109.47613 * 184.99659 * 4 2 1 37 37 H 1.07993 * 120.40820 * 359.97438 * 7 6 5 38 38 H 1.07990 * 120.78634 * 180.27163 * 8 7 6 39 39 H 0.97001 * 120.00397 * 144.17988 * 10 9 8 40 40 H 1.09008 * 113.77084 * 41.06184 * 14 13 11 41 41 H 1.08999 * 113.77018 * 269.66383 * 14 13 11 42 42 H 0.96700 * 114.00841 * 172.24670 * 16 15 14 43 43 H 0.97004 * 119.99784 * 5.59828 * 20 19 17 44 44 H 1.08999 * 113.77260 * 90.34318 * 25 13 11 45 45 H 1.08994 * 113.77265 * 318.93973 * 25 13 11 46 46 H 1.07998 * 119.63372 * 180.27326 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6620 -2.0982 1.1920 6 6 2.0392 -2.8847 2.2322 7 6 1.7000 -4.2316 2.2325 8 6 2.0939 -5.0262 3.2942 9 6 2.8108 -4.4367 4.3337 10 7 3.2265 -5.2016 5.4326 11 6 2.4413 -6.1927 5.8993 12 8 1.4134 -6.4795 5.3167 13 7 2.7958 -6.8658 7.0119 14 6 2.1996 -7.9724 7.7852 15 6 3.6310 -8.2662 8.2693 16 8 4.3375 -9.1961 7.4458 17 6 3.7193 -8.5963 9.7371 18 1 2.8180 -8.6901 10.3247 19 6 4.9508 -8.7787 10.3298 20 7 6.0463 -8.4314 9.6903 21 14 5.0632 -9.5191 12.0411 22 1 6.4883 -9.6092 12.4489 23 1 4.3264 -8.6592 13.0018 24 1 4.4643 -10.8779 12.0329 25 6 3.9358 -6.7923 7.9461 26 6 3.1127 -3.0852 4.2646 27 7 2.7249 -2.3595 3.2331 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2952 37 1 1.1391 -4.6543 1.4121 38 1 1.8479 -6.0774 3.3189 39 1 4.0791 -5.0176 5.8569 40 1 1.7745 -8.7622 7.1657 41 1 1.5270 -7.6426 8.5770 42 1 5.2717 -9.2941 7.6752 43 1 5.9854 -7.9732 8.8375 44 1 3.7733 -6.1159 8.7852 45 1 4.8970 -6.6398 7.4552 46 1 3.6718 -2.6214 5.0638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616170509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:47 Heat of formation + Delta-G solvation = -68.248529 kcal Electronic energy + Delta-G solvation = -28144.439054 eV Core-core repulsion = 24035.025842 eV Total energy + Delta-G solvation = -4109.413212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16091 -41.36695 -40.02453 -38.97163 -36.46558 -36.15632 -35.63998 -34.31349 -33.38489 -31.21259 -29.44650 -28.06172 -27.58967 -27.27669 -26.63262 -24.77246 -24.05289 -22.30894 -21.27814 -20.78631 -20.11540 -19.53651 -19.12400 -18.40934 -17.81577 -17.29804 -17.04522 -16.91441 -16.26217 -15.98443 -15.73603 -15.66756 -15.55731 -15.28624 -14.76871 -14.51360 -14.45534 -14.33316 -13.99994 -13.93201 -13.67842 -13.52693 -13.43578 -13.02888 -12.97101 -12.64094 -12.48161 -12.38562 -12.05391 -11.89968 -11.86049 -11.75437 -11.59940 -11.45529 -11.15921 -10.92094 -10.71966 -10.57263 -10.26354 -9.74776 -9.00025 -8.65839 -6.47282 -0.01610 0.12736 1.24456 1.63248 1.66526 1.87558 1.90291 1.99031 2.55077 2.63637 2.68233 2.94539 3.24180 3.46096 3.74998 3.78848 3.87468 3.88294 3.90235 4.02592 4.17676 4.28324 4.39772 4.42359 4.49400 4.53492 4.57292 4.62878 4.64586 4.69567 4.71693 4.79776 4.96704 4.97877 4.98804 4.99511 5.10740 5.18062 5.35647 5.37950 5.52606 5.73826 5.99471 6.10712 6.20238 6.47815 6.68352 6.81320 6.93981 7.27636 7.30846 8.67329 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.001892 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.490937 B =14794.440100 C =15173.782300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.141 4.141 4 C 0.073 3.927 5 O -0.310 6.310 6 C 0.294 3.706 7 C -0.170 4.170 8 C -0.054 4.054 9 C 0.072 3.928 10 N -0.666 5.666 11 C 0.720 3.280 12 O -0.620 6.620 13 N -0.650 5.650 14 C 0.145 3.855 15 C 0.198 3.802 16 O -0.576 6.576 17 C -0.630 4.630 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.916 5.916 21 Si 1.109 2.891 22 H -0.285 1.285 23 H -0.270 1.270 24 H -0.279 1.279 25 C 0.087 3.913 26 C 0.122 3.878 27 N -0.526 5.526 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.159 0.841 38 H 0.139 0.861 39 H 0.420 0.580 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.375 0.625 43 H 0.265 0.735 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 16.701 -13.950 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.002 4.002 5 O -0.218 6.218 6 C 0.115 3.885 7 C -0.190 4.190 8 C -0.082 4.082 9 C -0.025 4.025 10 N -0.315 5.315 11 C 0.424 3.576 12 O -0.502 6.502 13 N -0.386 5.386 14 C 0.022 3.978 15 C 0.158 3.842 16 O -0.384 6.384 17 C -0.668 4.668 18 H 0.081 0.919 19 C -0.202 4.202 20 N -0.553 5.553 21 Si 0.932 3.068 22 H -0.211 1.211 23 H -0.195 1.195 24 H -0.205 1.205 25 C -0.036 4.036 26 C -0.036 4.036 27 N -0.250 5.250 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.258 0.742 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.224 0.776 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.389 16.856 -13.927 22.302 hybrid contribution -0.268 -0.359 -0.497 0.669 sum -4.657 16.497 -14.424 22.403 Atomic orbital electron populations 1.21820 0.94356 1.01801 1.02401 1.21203 0.96953 0.96715 0.96381 1.21753 1.01497 0.93515 1.03109 1.22889 1.00100 0.77569 0.99631 1.86218 1.73671 1.22889 1.39028 1.19893 0.92167 0.89171 0.87279 1.21113 1.05481 0.91119 1.01334 1.21589 0.95067 1.01124 0.90392 1.18567 1.03386 0.91959 0.88591 1.42183 1.22952 1.34031 1.32328 1.15584 0.82433 0.79162 0.80435 1.90836 1.27690 1.70427 1.61234 1.49230 1.27838 1.37379 1.24183 1.23216 0.96754 0.85865 0.91964 1.20326 0.89322 0.85299 0.89303 1.86244 1.27053 1.64981 1.60132 1.22453 0.96116 1.54625 0.93588 0.91942 1.27029 0.91555 0.93966 1.07642 1.71025 1.30308 1.36795 1.17195 0.82998 0.76135 0.76480 0.71194 1.21093 1.19513 1.20465 1.24235 0.88429 1.00927 0.90023 1.22515 0.97969 0.87404 0.95742 1.67354 1.15538 1.39196 1.02901 0.91101 0.93319 0.92737 0.90178 0.91970 0.90564 0.92154 0.92126 0.91751 0.82315 0.84312 0.74242 0.91760 0.88003 0.77629 0.92353 0.88918 0.90739 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.09 71.98 0.65 -1.34 16 2 C -0.09 -1.29 3.16 -10.79 -0.03 -1.32 16 3 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 4 C 0.07 1.35 4.69 71.98 0.34 1.69 16 5 O -0.31 -7.26 9.65 -90.80 -0.88 -8.14 16 6 C 0.29 7.63 7.49 84.80 0.63 8.27 16 7 C -0.17 -4.40 10.04 22.45 0.23 -4.18 16 8 C -0.05 -1.61 8.80 22.56 0.20 -1.41 16 9 C 0.07 2.05 6.31 38.17 0.24 2.29 16 10 N -0.67 -19.81 5.36 -316.76 -1.70 -21.51 16 11 C 0.72 27.52 8.62 179.05 1.54 29.06 16 12 O -0.62 -27.22 14.60 -4.00 -0.06 -27.28 16 13 N -0.65 -25.28 3.61 -858.44 -3.10 -28.37 16 14 C 0.14 5.98 8.23 86.48 0.71 6.69 16 15 C 0.20 8.86 1.08 -10.88 -0.01 8.84 16 16 O -0.58 -27.40 13.46 -148.98 -2.00 -29.41 16 17 C -0.63 -30.38 8.57 25.60 0.22 -30.16 16 18 H 0.06 2.99 7.84 -2.91 -0.02 2.97 16 19 C 0.00 -0.01 5.28 84.66 0.45 0.44 16 20 N -0.92 -45.93 12.82 21.45 0.27 -45.65 16 21 Si 1.11 43.71 29.92 68.60 2.05 45.76 16 22 H -0.29 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 25 C 0.09 3.31 6.93 86.48 0.60 3.91 16 26 C 0.12 2.92 11.11 84.77 0.94 3.86 16 27 N -0.53 -13.39 9.20 -308.44 -2.84 -16.22 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.14 4.68 6.38 -2.92 -0.02 4.66 16 39 H 0.42 10.31 8.44 -92.71 -0.78 9.53 16 40 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 42 H 0.37 17.51 6.85 -74.06 -0.51 17.00 16 43 H 0.26 12.87 5.46 -92.71 -0.51 12.36 16 44 H 0.09 3.45 8.09 -2.39 -0.02 3.43 16 45 H 0.07 2.66 7.82 -2.39 -0.02 2.64 16 46 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -60.77 384.63 -0.89 -61.66 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.01 Total: 43.25 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 7.37 Total: 25.92 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -7.36 Total: -111.75 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -2.94 Total: -64.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.05 Total: 45.76 kcal Total: -60.77 -0.89 -61.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616170509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.593 kcal (2) G-P(sol) polarization free energy of solvation -60.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds