Wall clock time and date at job start Tue Mar 31 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53008 * 109.47245 * 119.99915 * 2 1 3 5 5 N 1.46897 * 109.46694 * 61.40466 * 4 2 1 6 6 C 1.46904 * 111.00137 * 73.71930 * 5 4 2 7 7 C 1.50704 * 109.46789 * 281.90404 * 6 5 4 8 8 H 1.08002 * 119.99877 * 358.35281 * 7 6 5 9 9 C 1.37874 * 119.99998 * 178.35308 * 7 6 5 10 10 N 1.31517 * 120.00141 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99938 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.46903 * 90.00494 * 11 9 7 13 13 H 1.48498 * 109.47183 * 210.00531 * 11 9 7 14 14 H 1.48502 * 109.47007 * 330.00310 * 11 9 7 15 15 C 1.46904 * 110.99743 * 197.66361 * 5 4 2 16 16 C 1.50696 * 109.46773 * 66.05241 * 15 5 4 17 17 O 1.21286 * 120.00638 * 359.97438 * 16 15 5 18 18 N 1.34777 * 120.00028 * 180.02562 * 16 15 5 19 19 C 1.39932 * 120.00216 * 185.67764 * 18 16 15 20 20 C 1.38886 * 120.06885 * 34.72075 * 19 18 16 21 21 C 1.38087 * 119.93073 * 180.02562 * 20 19 18 22 22 C 1.38314 * 120.06900 * 359.74975 * 21 20 19 23 23 C 1.38263 * 120.13651 * 0.50488 * 22 21 20 24 24 C 1.38128 * 120.07022 * 359.49291 * 23 22 21 25 25 N 1.48015 * 120.03430 * 180.27127 * 24 23 22 26 26 O 1.21806 * 120.00058 * 355.38183 * 25 24 23 27 27 O 1.21796 * 120.00432 * 175.37388 * 25 24 23 28 28 H 1.08997 * 109.47143 * 59.99900 * 1 2 3 29 29 H 1.09003 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47235 * 299.99923 * 1 2 3 31 31 H 1.09002 * 109.47019 * 239.99634 * 2 1 3 32 32 H 1.09001 * 109.46876 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47030 * 299.99984 * 3 2 1 34 34 H 1.08997 * 109.46987 * 59.99924 * 3 2 1 35 35 H 1.09003 * 109.46752 * 301.41007 * 4 2 1 36 36 H 1.08991 * 109.47106 * 181.40666 * 4 2 1 37 37 H 1.08996 * 109.47078 * 41.89676 * 6 5 4 38 38 H 1.09002 * 109.47245 * 161.90376 * 6 5 4 39 39 H 0.96998 * 120.00026 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47093 * 306.05105 * 15 5 4 41 41 H 1.09000 * 109.47350 * 186.05007 * 15 5 4 42 42 H 0.97000 * 120.00068 * 5.67522 * 18 16 15 43 43 H 1.08008 * 120.03794 * 0.02562 * 20 19 18 44 44 H 1.07998 * 119.97197 * 180.02562 * 21 20 19 45 45 H 1.08000 * 119.92841 * 180.27659 * 22 21 20 46 46 H 1.07998 * 119.95968 * 179.76405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5783 -2.1157 1.2324 6 6 2.3239 -2.9052 0.2431 7 6 1.7918 -2.6137 -1.1364 8 1 0.9634 -1.9323 -1.2628 9 6 2.3625 -3.2167 -2.2371 10 7 3.3709 -4.0468 -2.0832 11 14 1.7025 -2.8558 -3.9470 12 1 2.4242 -1.6918 -4.5207 13 1 1.9060 -4.0421 -4.8168 14 1 0.2524 -2.5468 -3.8629 15 6 1.6756 -2.7186 2.5684 16 6 0.7104 -2.0327 3.5005 17 8 0.0106 -1.1301 3.0923 18 7 0.6254 -2.4216 4.7882 19 6 -0.3516 -1.8681 5.6232 20 6 -1.5986 -1.5356 5.1100 21 6 -2.5604 -0.9891 5.9365 22 6 -2.2847 -0.7774 7.2752 23 6 -1.0425 -1.1025 7.7880 24 6 -0.0762 -1.6495 6.9665 25 7 1.2513 -2.0028 7.5175 26 8 1.5215 -1.7343 8.6745 27 8 2.0735 -2.5620 6.8143 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6562 -0.2222 2.1391 36 1 3.1297 -0.6995 1.2620 37 1 3.3802 -2.6405 0.2884 38 1 2.2055 -3.9666 0.4613 39 1 3.7722 -4.4714 -2.8575 40 1 2.6911 -2.6019 2.9467 41 1 1.4303 -3.7789 2.5073 42 1 1.2414 -3.0851 5.1361 43 1 -1.8159 -1.7043 4.0655 44 1 -3.5305 -0.7307 5.5382 45 1 -3.0402 -0.3540 7.9205 46 1 -0.8291 -0.9325 8.8329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755670523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:28 Heat of formation + Delta-G solvation = 2.729307 kcal Electronic energy + Delta-G solvation = -29650.446144 eV Core-core repulsion = 25544.110762 eV Total energy + Delta-G solvation = -4106.335382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49747 -40.68995 -39.04667 -37.19281 -36.78142 -34.92869 -33.67701 -32.56644 -32.22987 -30.64219 -28.19841 -26.83465 -26.39565 -26.33421 -24.33668 -23.41713 -22.72727 -21.20898 -20.29128 -19.45163 -19.04763 -18.87588 -17.93220 -17.74371 -17.20656 -16.29002 -15.82747 -15.71075 -15.05600 -14.93604 -14.68330 -14.45771 -14.08758 -13.69350 -13.58435 -13.21287 -12.89326 -12.71187 -12.49635 -12.25151 -12.15578 -11.78564 -11.66070 -11.62618 -11.38621 -11.35353 -11.22323 -11.03645 -10.78129 -10.74523 -10.58500 -10.11412 -10.08982 -10.02019 -9.91024 -9.84133 -9.25442 -9.04072 -8.74562 -8.39939 -7.34143 -6.04215 -4.02450 -0.39461 0.62454 1.10074 1.17917 2.51712 2.66418 3.07962 3.31142 3.37998 3.42179 3.99119 4.28039 4.38299 4.47500 4.53956 4.68715 4.85297 4.90544 5.21964 5.29971 5.43759 5.52788 5.57566 5.66897 5.73779 5.75605 5.81403 5.88452 6.03341 6.11313 6.17224 6.31056 6.34714 6.42105 6.54505 6.67940 6.78323 6.86655 7.06663 7.16805 7.25788 7.33716 7.43117 7.48178 7.83309 7.98891 8.07567 8.14692 8.47596 9.04431 9.59276 11.06355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.002952 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.269225 B = 9481.450583 C =10022.968593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.076 3.924 5 N -0.516 5.516 6 C 0.193 3.807 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.039 3.961 16 C 0.516 3.484 17 O -0.485 6.485 18 N -0.678 5.678 19 C 0.238 3.762 20 C -0.129 4.129 21 C -0.043 4.043 22 C -0.143 4.143 23 C -0.039 4.039 24 C -0.086 4.086 25 N 0.042 4.958 26 O -0.159 6.159 27 O -0.180 6.180 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.113 0.887 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.018 0.982 37 H -0.002 1.002 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.425 0.575 43 H 0.160 0.840 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 5.228 18.357 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.052 4.052 5 N -0.241 5.241 6 C 0.068 3.932 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.197 1.197 15 C -0.092 4.092 16 C 0.304 3.696 17 O -0.356 6.356 18 N -0.331 5.331 19 C 0.138 3.862 20 C -0.150 4.150 21 C -0.062 4.062 22 C -0.163 4.163 23 C -0.058 4.058 24 C -0.174 4.174 25 N 0.556 4.444 26 O -0.376 6.376 27 O -0.387 6.387 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.269 0.731 43 H 0.178 0.822 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.522 5.843 17.406 21.676 hybrid contribution 1.345 -0.322 -0.283 1.412 sum -10.176 5.521 17.122 20.669 Atomic orbital electron populations 1.21557 0.95398 1.02397 0.98504 1.21438 0.96311 0.93739 1.00812 1.21831 1.00226 0.97679 1.00358 1.22038 0.95683 0.89109 0.98399 1.61920 1.58295 1.02300 1.01601 1.19858 0.91247 0.92346 0.89725 1.21373 1.16766 1.26163 0.89841 0.90230 1.24993 0.95172 0.95285 0.99237 1.69954 1.23790 1.29799 1.30354 0.86576 0.79532 0.77694 0.84179 1.20717 1.21384 1.19654 1.21955 0.95969 0.99850 0.91453 1.21523 0.84329 0.83030 0.80671 1.90702 1.42552 1.27532 1.74849 1.44549 1.33824 1.43646 1.11094 1.17605 0.89747 0.92002 0.86846 1.21397 0.89794 1.01142 1.02626 1.21549 0.99427 0.92318 0.92953 1.21158 0.96237 1.02886 0.96007 1.20888 0.91464 0.92885 1.00595 1.21000 0.85661 1.16119 0.94583 1.43467 1.02330 0.98019 1.00541 1.94528 1.83903 1.57309 1.01813 1.94380 1.43996 1.42436 1.57903 0.95255 0.91052 0.94347 0.86967 0.93587 0.93357 0.94079 0.92290 0.96412 0.98375 0.95533 0.92987 0.92232 0.87547 0.73099 0.82236 0.83667 0.83623 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.42 37.16 0.31 -2.00 16 2 C -0.10 -2.06 2.40 -90.62 -0.22 -2.27 16 3 C -0.14 -2.40 9.19 37.16 0.34 -2.06 16 4 C 0.08 1.49 3.94 -3.82 -0.02 1.47 16 5 N -0.52 -10.45 3.48 -237.51 -0.83 -11.28 16 6 C 0.19 4.67 4.78 -4.97 -0.02 4.64 16 7 C -0.50 -13.21 7.06 -34.44 -0.24 -13.46 16 8 H 0.08 2.06 4.70 -52.49 -0.25 1.82 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -25.75 13.29 55.43 0.74 -25.02 16 11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.04 0.64 5.42 -4.98 -0.03 0.61 16 16 C 0.52 7.79 7.09 -10.99 -0.08 7.71 16 17 O -0.49 -8.38 12.31 5.55 0.07 -8.31 16 18 N -0.68 -8.53 4.70 -9.86 -0.05 -8.58 16 19 C 0.24 2.81 6.24 -83.69 -0.52 2.29 16 20 C -0.13 -1.35 8.65 -39.40 -0.34 -1.69 16 21 C -0.04 -0.32 10.04 -39.61 -0.40 -0.71 16 22 C -0.14 -0.90 10.04 -39.54 -0.40 -1.30 16 23 C -0.04 -0.32 9.55 -39.61 -0.38 -0.70 16 24 C -0.09 -0.97 6.86 -79.76 -0.55 -1.51 16 25 N 0.04 0.54 4.45 34.05 0.15 0.70 16 26 O -0.16 -2.09 18.46 -29.46 -0.54 -2.64 16 27 O -0.18 -2.46 15.94 -29.46 -0.47 -2.93 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.51 6.83 -51.93 -0.35 1.15 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 2.56 4.96 -51.93 -0.26 2.30 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.13 5.82 -51.93 -0.30 0.83 16 36 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 37 H 0.00 -0.04 7.71 -51.93 -0.40 -0.44 16 38 H 0.03 0.67 7.69 -51.93 -0.40 0.27 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 41 H 0.11 1.59 7.81 -51.93 -0.41 1.18 16 42 H 0.43 4.86 6.25 -40.82 -0.26 4.61 16 43 H 0.16 1.88 6.54 -52.48 -0.34 1.53 16 44 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 46 H 0.15 0.99 7.62 -52.49 -0.40 0.59 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -30.63 375.58 -9.21 -39.84 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.28 Total: 4.06 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.63 Total: -7.59 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.02 Total: -44.18 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.95 Total: -13.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.63 -9.21 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.568 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds