Wall clock time and date at job start Tue Mar 31 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47122 * 179.97438 * 4 3 2 6 6 N 1.29019 * 126.44302 * 270.18278 * 5 4 3 7 7 N 1.28741 * 108.80866 * 180.24912 * 6 5 4 8 8 N 1.28842 * 109.39752 * 359.74305 * 7 6 5 9 9 C 1.31065 * 107.99227 * 359.97438 * 8 7 6 10 10 C 1.50706 * 126.66075 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47064 * 90.02791 * 10 9 8 12 12 C 1.39925 * 120.00021 * 180.02562 * 11 10 9 13 13 C 1.38720 * 120.07752 * 359.97438 * 12 11 10 14 14 C 1.38207 * 120.01459 * 179.74295 * 13 12 11 15 15 C 1.38529 * 120.17940 * 0.23006 * 14 13 12 16 16 F 1.35101 * 119.92258 * 179.97438 * 15 14 13 17 17 C 1.38359 * 120.15915 * 0.02562 * 15 14 13 18 18 C 1.38732 * 119.97740 * 0.02562 * 17 15 14 19 19 O 1.35789 * 120.08501 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00236 * 354.39746 * 19 18 17 21 21 H 1.07997 * 119.99616 * 5.06634 * 20 19 18 22 22 C 1.38625 * 120.00093 * 185.06433 * 20 19 18 23 23 N 1.31580 * 120.00152 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47254 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47156 * 120.00386 * 24 22 20 27 27 H 1.48500 * 109.47134 * 239.99833 * 24 22 20 28 28 H 1.09001 * 109.47297 * 59.99799 * 1 2 3 29 29 H 1.08996 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47021 * 299.99539 * 1 2 3 31 31 H 1.09007 * 109.47021 * 240.00461 * 2 1 3 32 32 H 1.09001 * 109.47297 * 120.00201 * 2 1 3 33 33 H 1.09000 * 109.46924 * 60.00651 * 3 2 1 34 34 H 1.09001 * 109.47144 * 300.00294 * 3 2 1 35 35 H 1.08995 * 109.47000 * 60.00000 * 4 3 2 36 36 H 1.09002 * 109.47038 * 300.00627 * 4 3 2 37 37 H 1.08998 * 109.46945 * 330.02447 * 10 9 8 38 38 H 1.09004 * 109.47091 * 210.02561 * 10 9 8 39 39 H 0.97005 * 119.99773 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.98908 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.91065 * 180.25204 * 14 13 12 42 42 H 1.07994 * 120.01363 * 179.97438 * 17 15 14 43 43 H 0.97000 * 120.00127 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 7 4.3103 3.5470 -1.0395 7 7 4.7256 4.7017 -0.6500 8 7 4.7414 4.7387 0.6378 9 6 4.3248 3.5779 1.0813 10 6 4.1797 3.1650 2.5235 11 7 2.8328 3.4982 2.9936 12 6 2.4598 3.2083 4.3107 13 6 3.3640 2.6049 5.1725 14 6 2.9960 2.3240 6.4747 15 6 1.7233 2.6389 6.9221 16 9 1.3689 2.3615 8.1960 17 6 0.8139 3.2360 6.0673 18 6 1.1760 3.5200 4.7585 19 8 0.2851 4.1055 3.9175 20 6 -0.9694 4.2794 4.3793 21 1 -1.2065 4.0337 5.4039 22 6 -1.9550 4.7736 3.5391 23 7 -1.6663 5.0725 2.2906 24 14 -3.6935 5.0139 4.1789 25 1 -3.7569 4.6058 5.6054 26 1 -4.0727 6.4444 4.0565 27 1 -4.6329 4.1831 3.3836 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 4.9167 3.6931 3.1285 38 1 4.3399 2.0904 2.6117 39 1 2.1997 3.9205 2.3920 40 1 4.3572 2.3589 4.8271 41 1 3.7026 1.8579 7.1454 42 1 -0.1777 3.4802 6.4184 43 1 -2.3561 5.4179 1.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760458854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:50 Heat of formation + Delta-G solvation = 64.477159 kcal Electronic energy + Delta-G solvation = -29011.687916 eV Core-core repulsion = 24816.862568 eV Total energy + Delta-G solvation = -4194.825349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.16354 -44.21983 -39.35705 -37.15251 -36.75743 -35.27360 -34.34620 -32.55314 -32.33083 -29.89388 -29.40545 -28.69135 -26.03400 -25.50709 -25.08640 -23.32996 -22.33632 -21.56482 -21.43769 -21.00675 -18.30407 -17.99760 -17.42756 -17.08952 -16.48767 -15.94352 -15.91118 -15.26038 -14.98835 -14.74404 -14.54548 -14.26107 -14.24890 -14.13461 -13.81224 -13.48038 -13.40693 -13.18603 -12.87162 -12.67030 -12.29047 -12.22449 -12.06589 -11.91077 -11.63774 -11.55184 -11.41382 -11.30343 -11.11751 -10.97676 -10.81930 -10.75568 -10.66180 -10.49649 -10.18913 -9.68656 -9.49990 -8.95580 -7.88239 -6.67502 -6.57291 -4.13539 1.10342 1.87018 1.96882 2.09851 2.18535 3.05627 3.08459 3.13654 3.64419 3.84890 3.96922 4.04051 4.31085 4.36013 4.47960 4.72080 4.83948 4.88380 4.91346 4.98418 5.14345 5.17007 5.28433 5.36835 5.39736 5.44800 5.53511 5.60338 5.70524 5.71652 5.76123 5.93705 5.98897 6.04131 6.09862 6.23587 6.25923 6.42359 6.65727 6.88748 6.97300 7.13753 7.42807 7.72989 7.86541 8.07896 8.58060 8.88772 9.51986 10.59591 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.007945 B = 0.004441 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.325181 B = 6303.013336 C = 7749.477956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.112 3.888 5 N -0.294 5.294 6 N -0.092 5.092 7 N -0.078 5.078 8 N -0.285 5.285 9 C 0.174 3.826 10 C 0.219 3.781 11 N -0.742 5.742 12 C 0.148 3.852 13 C -0.140 4.140 14 C -0.198 4.198 15 C 0.094 3.906 16 F -0.156 7.156 17 C -0.241 4.241 18 C 0.127 3.873 19 O -0.174 6.174 20 C -0.387 4.387 21 H 0.093 0.907 22 C 0.042 3.958 23 N -0.860 5.860 24 Si 0.939 3.061 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -11.280 -2.126 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.180 4.180 4 C -0.009 4.009 5 N -0.097 5.097 6 N -0.077 5.077 7 N -0.072 5.072 8 N -0.135 5.135 9 C -0.105 4.105 10 C 0.091 3.909 11 N -0.380 5.380 12 C 0.049 3.951 13 C -0.163 4.163 14 C -0.218 4.218 15 C 0.073 3.927 16 F -0.135 7.135 17 C -0.263 4.263 18 C 0.071 3.929 19 O -0.078 6.078 20 C -0.463 4.463 21 H 0.110 0.890 22 C -0.163 4.163 23 N -0.495 5.495 24 Si 0.764 3.236 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.940 -10.218 -3.581 14.041 hybrid contribution -1.509 -0.432 0.908 1.813 sum 7.431 -10.650 -2.673 13.258 Atomic orbital electron populations 1.21751 0.94709 1.01785 1.02943 1.21374 0.97100 0.94535 1.02141 1.22091 0.91320 0.99481 1.05117 1.22422 0.97063 0.75242 1.06180 1.48644 1.42188 1.14735 1.04120 1.78854 1.15768 1.00252 1.12871 1.78641 1.14476 1.10282 1.03782 1.75055 1.17895 1.17080 1.03467 1.26034 1.01450 0.88705 0.94283 1.19461 0.88354 1.00215 0.82876 1.44101 1.12282 1.70735 1.10882 1.16937 0.91564 1.01677 0.84967 1.19921 0.98296 1.05128 0.92994 1.20284 0.95396 1.09400 0.96765 1.17268 0.94166 1.02435 0.78797 1.91392 1.92669 1.92172 1.37265 1.20809 1.01682 1.09968 0.93810 1.18550 0.89482 0.95188 0.89635 1.83891 1.19575 1.66624 1.37717 1.21334 0.82265 1.44848 0.97866 0.88951 1.25246 0.99598 0.96360 0.95076 1.70026 1.34297 1.40289 1.04843 0.85665 0.80435 0.78490 0.79034 1.18981 1.20091 1.20131 0.92631 0.92551 0.91670 0.91813 0.91394 0.89473 0.90474 0.87089 0.87082 0.88595 0.90329 0.75158 0.86057 0.86357 0.84325 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.11 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.14 -1.47 5.54 -26.73 -0.15 -1.62 16 4 C 0.11 0.95 6.22 -4.04 -0.03 0.93 16 5 N -0.29 -3.70 3.35 -58.27 -0.19 -3.89 16 6 N -0.09 -1.40 13.29 60.35 0.80 -0.60 16 7 N -0.08 -1.36 13.43 60.35 0.81 -0.55 16 8 N -0.29 -4.80 12.36 32.70 0.40 -4.40 16 9 C 0.17 2.40 7.50 -155.43 -1.17 1.23 16 10 C 0.22 2.60 5.25 -5.19 -0.03 2.57 16 11 N -0.74 -11.83 5.72 -59.63 -0.34 -12.18 16 12 C 0.15 2.64 6.67 -83.52 -0.56 2.08 16 13 C -0.14 -2.11 9.31 -39.41 -0.37 -2.47 16 14 C -0.20 -3.17 10.02 -39.49 -0.40 -3.57 16 15 C 0.09 1.75 7.29 -39.43 -0.29 1.47 16 16 F -0.16 -2.87 17.26 2.25 0.04 -2.84 16 17 C -0.24 -5.02 9.14 -39.35 -0.36 -5.38 16 18 C 0.13 2.75 6.67 -38.93 -0.26 2.49 16 19 O -0.17 -4.43 9.00 -0.01 0.00 -4.43 16 20 C -0.39 -10.07 9.49 30.88 0.29 -9.78 16 21 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -23.64 13.67 55.48 0.76 -22.88 16 24 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.67 7.14 -51.93 -0.37 0.30 16 37 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 38 H 0.08 0.68 6.97 -51.93 -0.36 0.32 16 39 H 0.41 7.75 7.83 -40.82 -0.32 7.43 16 40 H 0.12 1.39 6.73 -52.49 -0.35 1.04 16 41 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -30.38 372.37 -5.65 -36.03 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.33 Total: 8.83 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -3.19 Total: -13.47 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 2.24 Total: -44.50 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: 0.00 Total: -4.43 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.38 -5.65 -36.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760458854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.509 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds