Wall clock time and date at job start Tue Mar 31 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47122 * 179.97438 * 4 3 2 6 6 N 1.29019 * 126.44302 * 270.18278 * 5 4 3 7 7 N 1.28741 * 108.80866 * 180.24912 * 6 5 4 8 8 N 1.28842 * 109.39752 * 359.74305 * 7 6 5 9 9 C 1.31065 * 107.99227 * 359.97438 * 8 7 6 10 10 C 1.50706 * 126.66075 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47064 * 90.02791 * 10 9 8 12 12 C 1.39925 * 120.00021 * 180.02562 * 11 10 9 13 13 C 1.38720 * 120.07752 * 359.97438 * 12 11 10 14 14 C 1.38207 * 120.01459 * 179.74295 * 13 12 11 15 15 C 1.38529 * 120.17940 * 0.23006 * 14 13 12 16 16 F 1.35101 * 119.92258 * 179.97438 * 15 14 13 17 17 C 1.38359 * 120.15915 * 0.02562 * 15 14 13 18 18 C 1.38732 * 119.97740 * 0.02562 * 17 15 14 19 19 O 1.35789 * 120.08501 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00236 * 354.39746 * 19 18 17 21 21 H 1.07997 * 119.99616 * 5.06634 * 20 19 18 22 22 C 1.38625 * 120.00093 * 185.06433 * 20 19 18 23 23 N 1.31580 * 120.00152 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47254 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47156 * 120.00386 * 24 22 20 27 27 H 1.48500 * 109.47134 * 239.99833 * 24 22 20 28 28 H 1.09001 * 109.47297 * 59.99799 * 1 2 3 29 29 H 1.08996 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47021 * 299.99539 * 1 2 3 31 31 H 1.09007 * 109.47021 * 240.00461 * 2 1 3 32 32 H 1.09001 * 109.47297 * 120.00201 * 2 1 3 33 33 H 1.09000 * 109.46924 * 60.00651 * 3 2 1 34 34 H 1.09001 * 109.47144 * 300.00294 * 3 2 1 35 35 H 1.08995 * 109.47000 * 60.00000 * 4 3 2 36 36 H 1.09002 * 109.47038 * 300.00627 * 4 3 2 37 37 H 1.08998 * 109.46945 * 330.02447 * 10 9 8 38 38 H 1.09004 * 109.47091 * 210.02561 * 10 9 8 39 39 H 0.97005 * 119.99773 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.98908 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.91065 * 180.25204 * 14 13 12 42 42 H 1.07994 * 120.01363 * 179.97438 * 17 15 14 43 43 H 0.97000 * 120.00127 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 7 4.3103 3.5470 -1.0395 7 7 4.7256 4.7017 -0.6500 8 7 4.7414 4.7387 0.6378 9 6 4.3248 3.5779 1.0813 10 6 4.1797 3.1650 2.5235 11 7 2.8328 3.4982 2.9936 12 6 2.4598 3.2083 4.3107 13 6 3.3640 2.6049 5.1725 14 6 2.9960 2.3240 6.4747 15 6 1.7233 2.6389 6.9221 16 9 1.3689 2.3615 8.1960 17 6 0.8139 3.2360 6.0673 18 6 1.1760 3.5200 4.7585 19 8 0.2851 4.1055 3.9175 20 6 -0.9694 4.2794 4.3793 21 1 -1.2065 4.0337 5.4039 22 6 -1.9550 4.7736 3.5391 23 7 -1.6663 5.0725 2.2906 24 14 -3.6935 5.0139 4.1789 25 1 -3.7569 4.6058 5.6054 26 1 -4.0727 6.4444 4.0565 27 1 -4.6329 4.1831 3.3836 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 4.9167 3.6931 3.1285 38 1 4.3399 2.0904 2.6117 39 1 2.1997 3.9205 2.3920 40 1 4.3572 2.3589 4.8271 41 1 3.7026 1.8579 7.1454 42 1 -0.1777 3.4802 6.4184 43 1 -2.3561 5.4179 1.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760458854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:49 Heat of formation + Delta-G solvation = 44.805139 kcal Electronic energy + Delta-G solvation = -29012.540959 eV Core-core repulsion = 24816.862568 eV Total energy + Delta-G solvation = -4195.678391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.61104 -45.33881 -40.88446 -38.46232 -37.89701 -36.54096 -35.29275 -34.28167 -33.68193 -30.91365 -30.81879 -29.95030 -27.42550 -27.15914 -26.06938 -24.45655 -23.64057 -22.85211 -22.49733 -22.07632 -20.00255 -19.42371 -18.57002 -18.21101 -17.84230 -17.27485 -16.91926 -16.71123 -16.43914 -16.13889 -15.87883 -15.67227 -15.39279 -15.20417 -15.07813 -15.01259 -14.57519 -14.42195 -13.88781 -13.77451 -13.71257 -13.53679 -13.34320 -13.17954 -12.96698 -12.86495 -12.51856 -12.45901 -12.27865 -12.18676 -12.08193 -12.03922 -11.76488 -11.59195 -11.52544 -11.27278 -10.82248 -10.79390 -9.40689 -8.48026 -8.09048 -6.09895 0.01629 0.51360 0.64587 0.93548 1.00836 1.33526 1.38918 1.49210 2.13879 2.51878 2.78633 2.81698 3.11446 3.15948 3.36007 3.57465 3.64645 3.68254 3.97623 4.02949 4.05767 4.17750 4.22480 4.30011 4.40167 4.47109 4.50724 4.52677 4.54652 4.74942 4.78246 4.85775 4.91084 5.04629 5.10892 5.13514 5.19170 5.25893 5.34321 5.39850 5.46918 5.50099 5.93359 6.03707 6.43698 6.58035 6.98802 7.42333 7.75679 8.73353 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.007945 B = 0.004441 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.325181 B = 6303.013336 C = 7749.477956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.105 3.895 5 N -0.283 5.283 6 N -0.098 5.098 7 N -0.111 5.111 8 N -0.317 5.317 9 C 0.177 3.823 10 C 0.216 3.784 11 N -0.745 5.745 12 C 0.157 3.843 13 C -0.123 4.123 14 C -0.163 4.163 15 C 0.069 3.931 16 F -0.157 7.157 17 C -0.248 4.248 18 C 0.085 3.915 19 O -0.217 6.217 20 C -0.401 4.401 21 H 0.094 0.906 22 C -0.015 4.015 23 N -0.912 5.912 24 Si 1.005 2.995 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.394 0.606 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.118 0.882 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.412 -14.289 -0.861 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.176 4.176 4 C -0.013 4.013 5 N -0.086 5.086 6 N -0.084 5.084 7 N -0.104 5.104 8 N -0.167 5.167 9 C -0.102 4.102 10 C 0.090 3.910 11 N -0.379 5.379 12 C 0.055 3.945 13 C -0.146 4.146 14 C -0.183 4.183 15 C 0.048 3.952 16 F -0.136 7.136 17 C -0.270 4.270 18 C 0.032 3.968 19 O -0.124 6.124 20 C -0.478 4.478 21 H 0.111 0.889 22 C -0.213 4.213 23 N -0.551 5.551 24 Si 0.826 3.174 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.194 1.194 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.227 0.773 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.870 -13.270 -2.282 17.950 hybrid contribution -2.161 0.326 0.641 2.277 sum 9.709 -12.944 -1.642 16.264 Atomic orbital electron populations 1.21777 0.96799 1.02178 1.00780 1.21358 0.95140 0.93435 1.04344 1.21988 0.93011 1.00232 1.02325 1.22889 0.95321 0.73520 1.09604 1.48933 1.40819 1.15624 1.03189 1.78764 1.15642 1.00129 1.13881 1.78611 1.16107 1.11407 1.04321 1.74961 1.19304 1.18917 1.03545 1.26299 1.00545 0.88087 0.95246 1.19927 0.86217 1.03225 0.81624 1.44240 1.13560 1.70123 1.09964 1.17205 0.90474 1.00702 0.86075 1.20489 0.99633 1.02649 0.91851 1.20841 0.94212 1.05792 0.97424 1.17423 0.95177 1.03877 0.78744 1.91388 1.92859 1.92240 1.37107 1.20842 1.01543 1.10262 0.94308 1.19083 0.90783 0.97051 0.89904 1.83864 1.19782 1.69640 1.39105 1.21638 0.83306 1.44795 0.98046 0.88905 1.26282 1.03507 0.96240 0.95240 1.70156 1.35472 1.43120 1.06307 0.84700 0.75444 0.78420 0.78840 1.17947 1.19781 1.19398 0.93549 0.90823 0.95147 0.88942 0.89638 0.92991 0.92733 0.84154 0.83245 0.86682 0.85474 0.77252 0.80683 0.82238 0.86448 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.10 -1.58 5.93 30.59 0.18 -1.40 16 3 C -0.14 -2.72 5.54 30.60 0.17 -2.55 16 4 C 0.11 1.44 6.22 86.38 0.54 1.98 16 5 N -0.28 -6.57 3.35 -338.27 -1.13 -7.70 16 6 N -0.10 -2.93 13.29 37.02 0.49 -2.44 16 7 N -0.11 -3.88 13.43 37.01 0.50 -3.38 16 8 N -0.32 -10.56 12.36 -50.44 -0.62 -11.18 16 9 C 0.18 4.55 7.50 138.13 1.04 5.58 16 10 C 0.22 4.29 5.25 85.63 0.45 4.74 16 11 N -0.74 -22.69 5.72 -342.56 -1.96 -24.65 16 12 C 0.16 5.27 6.67 38.27 0.26 5.53 16 13 C -0.12 -3.05 9.31 22.38 0.21 -2.84 16 14 C -0.16 -4.39 10.02 22.33 0.22 -4.17 16 15 C 0.07 2.43 7.29 22.37 0.16 2.59 16 16 F -0.16 -5.52 17.26 44.97 0.78 -4.74 16 17 C -0.25 -10.52 9.14 22.42 0.20 -10.32 16 18 C 0.08 3.74 6.67 22.69 0.15 3.89 16 19 O -0.22 -11.77 9.00 -22.93 -0.21 -11.98 16 20 C -0.40 -22.26 9.49 67.91 0.64 -21.61 16 21 H 0.09 4.90 5.21 -2.91 -0.02 4.88 16 22 C -0.01 -0.80 5.49 84.82 0.47 -0.33 16 23 N -0.91 -53.63 13.67 21.61 0.30 -53.34 16 24 Si 1.01 42.52 29.55 68.60 2.03 44.55 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.15 0.94 7.14 -2.39 -0.02 0.92 16 37 H 0.12 1.95 7.95 -2.39 -0.02 1.93 16 38 H 0.13 1.35 6.97 -2.38 -0.02 1.33 16 39 H 0.39 15.29 7.83 -92.70 -0.73 14.57 16 40 H 0.18 2.54 6.73 -2.91 -0.02 2.52 16 41 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 43 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -75.15 372.37 5.91 -69.23 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.34 Total: 27.21 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 5.40 Total: -21.58 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -2.43 Total: -102.69 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.21 Total: -11.98 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.78 Total: -4.74 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -75.15 5.91 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760458854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.039 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds