Wall clock time and date at job start Tue Mar 31 2020 19:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.08999 * 109.47497 * 54.99391 * 3 2 1 5 5 C 1.53005 * 109.46923 * 294.99587 * 3 2 1 6 6 N 1.46502 * 109.47061 * 175.00115 * 3 2 1 7 7 N 1.39920 * 125.74752 * 59.97158 * 6 3 2 8 8 C 1.30431 * 108.92214 * 180.02562 * 7 6 3 9 9 C 1.41342 * 108.00902 * 359.97438 * 8 7 6 10 10 C 1.47288 * 126.42602 * 179.97438 * 9 8 7 11 11 O 1.21527 * 120.00151 * 185.38303 * 10 9 8 12 12 O 1.34753 * 120.00120 * 5.65720 * 10 9 8 13 13 C 1.45199 * 117.00357 * 179.72644 * 12 10 9 14 14 C 1.50698 * 109.47066 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00501 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99861 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00446 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99572 * 0.02562 * 17 16 14 19 19 C 1.38941 * 120.00332 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00102 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47107 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47447 * 120.00159 * 21 19 17 24 24 H 1.48509 * 109.47300 * 240.00418 * 21 19 17 25 25 C 1.34231 * 125.73705 * 240.26087 * 6 3 2 26 26 C 1.50699 * 126.30032 * 359.97438 * 25 6 3 27 27 C 1.53003 * 117.49893 * 312.61174 * 26 25 6 28 28 C 1.52994 * 117.49994 * 243.98835 * 26 25 6 29 29 H 1.09005 * 109.47002 * 60.00195 * 1 2 3 30 30 H 1.08995 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47571 * 300.00782 * 1 2 3 32 32 H 1.08997 * 109.47185 * 239.99333 * 2 1 3 33 33 H 1.09002 * 109.46551 * 119.99572 * 2 1 3 34 34 H 1.08999 * 109.46874 * 300.00185 * 5 3 2 35 35 H 1.08996 * 109.46879 * 59.99645 * 5 3 2 36 36 H 1.08995 * 109.47022 * 180.02562 * 5 3 2 37 37 H 1.07998 * 125.99950 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47024 * 299.99847 * 13 12 10 39 39 H 1.08994 * 109.46997 * 59.99994 * 13 12 10 40 40 H 0.97003 * 120.00411 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99854 * 180.02562 * 20 19 17 42 42 H 1.08999 * 115.54758 * 98.31550 * 26 25 6 43 43 H 1.09005 * 117.49712 * 359.97438 * 27 26 25 44 44 H 1.08992 * 117.50103 * 145.01698 * 27 26 25 45 45 H 1.08994 * 117.50358 * 214.97621 * 28 26 25 46 46 H 1.09008 * 117.49840 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 7 3.5000 1.4442 0.1204 7 7 4.3948 0.8486 -0.7754 8 6 5.6124 1.0479 -0.3524 9 6 5.5419 1.7905 0.8481 10 6 6.6808 2.2376 1.6681 11 8 6.4835 2.7876 2.7337 12 8 7.9414 2.0418 1.2342 13 6 9.0144 2.5135 2.0913 14 6 10.3424 2.2092 1.4473 15 8 10.3809 1.6503 0.3715 16 7 11.4874 2.5591 2.0662 17 6 12.6956 2.2819 1.4806 18 1 12.7299 1.7835 0.5231 19 6 13.8760 2.6421 2.1189 20 7 13.8343 3.2482 3.2842 21 14 15.5222 2.2650 1.3206 22 1 15.2973 1.5833 0.0206 23 1 16.2638 3.5314 1.0931 24 1 16.3143 1.3810 2.2132 25 6 4.2043 2.0129 1.1115 26 6 3.6398 2.7597 2.2924 27 6 2.5662 3.8138 2.0141 28 6 3.9778 4.2468 2.4150 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.0699 1.5874 -2.1492 35 1 0.5490 2.1251 -1.3971 36 1 1.9990 3.1540 -1.3077 37 1 6.5160 0.7063 -0.8352 38 1 8.9180 3.5897 2.2352 39 1 8.9556 2.0111 3.0568 40 1 11.4567 3.0065 2.9263 41 1 14.6584 3.5000 3.7296 42 1 3.5544 2.1853 3.2148 43 1 2.2686 3.9673 0.9767 44 1 1.7742 3.9329 2.7533 45 1 4.1144 4.6509 3.4180 46 1 4.6083 4.6851 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760633498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:16 Heat of formation + Delta-G solvation = -27.295650 kcal Electronic energy + Delta-G solvation = -28532.775496 eV Core-core repulsion = 24425.138134 eV Total energy + Delta-G solvation = -4107.637362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80768 -39.72225 -38.00205 -37.36455 -36.75973 -35.72836 -33.93560 -31.98466 -31.32191 -30.51972 -29.49863 -28.15384 -25.48243 -24.62783 -23.87743 -23.14774 -22.30050 -21.95079 -19.94232 -19.52978 -19.37449 -17.99130 -17.74171 -16.74762 -16.19396 -16.13044 -15.81278 -15.54155 -15.31260 -15.20306 -14.61816 -14.45931 -14.19169 -13.92198 -13.81191 -13.49728 -13.23692 -12.88649 -12.74217 -12.35175 -12.28018 -12.24645 -12.14506 -11.92962 -11.80277 -11.58031 -11.57418 -11.32993 -11.23222 -11.11222 -10.79318 -10.49395 -10.35257 -10.27121 -10.23801 -10.10121 -9.56424 -9.54841 -8.79675 -8.44699 -8.02756 -6.45246 -3.86870 1.26507 2.00050 2.08218 2.96447 3.15269 3.26981 3.32507 3.34889 3.40289 3.81046 3.99013 4.02316 4.17728 4.31861 4.47298 4.49535 4.61703 4.68055 4.83944 4.84896 4.90946 4.97182 5.04882 5.17832 5.19386 5.20587 5.22267 5.31410 5.40879 5.50659 5.51744 5.56474 5.61703 5.72903 5.77744 5.79336 5.80496 5.82929 5.87148 6.14334 6.37382 6.63246 6.81003 7.43593 7.52706 7.97631 8.16698 8.54797 9.12581 9.45523 9.95816 10.72215 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.002161 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.077318 B =12955.773857 C =13722.912076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.152 3.848 4 H 0.109 0.891 5 C -0.164 4.164 6 N -0.349 5.349 7 N -0.296 5.296 8 C 0.106 3.894 9 C -0.269 4.269 10 C 0.538 3.462 11 O -0.517 6.517 12 O -0.323 6.323 13 C 0.064 3.936 14 C 0.440 3.560 15 O -0.575 6.575 16 N -0.555 5.555 17 C -0.300 4.300 18 H 0.106 0.894 19 C 0.023 3.977 20 N -0.898 5.898 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.188 3.812 26 C -0.102 4.102 27 C -0.187 4.187 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.202 0.798 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.395 0.605 41 H 0.272 0.728 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.445 -0.449 -1.950 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.051 3.949 4 H 0.127 0.873 5 C -0.221 4.221 6 N -0.127 5.127 7 N -0.114 5.114 8 C -0.081 4.081 9 C -0.282 4.282 10 C 0.383 3.617 11 O -0.408 6.408 12 O -0.238 6.238 13 C -0.013 4.013 14 C 0.225 3.775 15 O -0.459 6.459 16 N -0.193 5.193 17 C -0.429 4.429 18 H 0.124 0.876 19 C -0.179 4.179 20 N -0.539 5.539 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.207 1.207 25 C 0.055 3.945 26 C -0.122 4.122 27 C -0.224 4.224 28 C -0.166 4.166 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.218 0.782 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.228 0.772 41 H 0.082 0.918 42 H 0.150 0.850 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -29.163 -1.144 -3.216 29.362 hybrid contribution 1.545 0.476 1.037 1.921 sum -27.618 -0.668 -2.179 27.712 Atomic orbital electron populations 1.21801 0.94245 1.02601 1.02237 1.21860 0.96564 0.94681 1.03922 1.21617 0.73783 0.98669 1.00852 0.87324 1.22188 1.02279 1.00969 0.96674 1.48678 1.06760 1.40382 1.16919 1.77209 0.99178 1.20315 1.14720 1.24326 0.96169 0.94531 0.93108 1.19016 0.90293 1.16814 1.02086 1.19957 0.82517 0.75676 0.83565 1.90800 1.86147 1.41086 1.22738 1.86585 1.14013 1.74175 1.48988 1.22681 0.85128 1.00357 0.93177 1.19368 0.84271 0.86138 0.87699 1.90557 1.86807 1.46223 1.22298 1.41713 1.04266 1.52314 1.20984 1.19771 0.81526 1.36346 1.05252 0.87591 1.25302 0.99976 0.96709 0.95901 1.69626 1.29273 1.40155 1.14853 0.85752 0.80936 0.78118 0.79252 1.19104 1.20686 1.20677 1.20460 0.90284 0.93726 0.90000 1.20493 1.04185 0.92070 0.95429 1.23230 0.93467 1.02881 1.02811 1.22845 0.96222 0.93637 1.03847 0.91989 0.91873 0.92373 0.90230 0.91288 0.90749 0.90220 0.92026 0.78176 0.89657 0.89650 0.77182 0.91761 0.85020 0.88749 0.87682 0.87449 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.13 -0.90 5.65 -26.73 -0.15 -1.06 16 3 C 0.15 1.14 2.61 -67.93 -0.18 0.96 16 4 H 0.11 0.65 5.59 -51.93 -0.29 0.36 16 5 C -0.16 -1.06 9.20 37.16 0.34 -0.72 16 6 N -0.35 -3.88 3.25 -50.15 -0.16 -4.04 16 7 N -0.30 -3.91 12.33 30.87 0.38 -3.53 16 8 C 0.11 1.50 11.87 -16.97 -0.20 1.30 16 9 C -0.27 -4.02 6.12 -105.08 -0.64 -4.66 16 10 C 0.54 9.28 7.95 34.41 0.27 9.55 16 11 O -0.52 -9.12 14.56 -19.29 -0.28 -9.40 16 12 O -0.32 -6.33 9.61 -47.32 -0.45 -6.78 16 13 C 0.06 1.26 5.95 36.00 0.21 1.48 16 14 C 0.44 10.81 7.86 -10.99 -0.09 10.72 16 15 O -0.58 -16.18 16.08 -14.11 -0.23 -16.41 16 16 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 18 H 0.11 3.09 7.16 -52.48 -0.38 2.72 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 21 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 C 0.19 2.31 6.45 -81.59 -0.53 1.79 16 26 C -0.10 -1.01 4.84 -91.77 -0.44 -1.45 16 27 C -0.19 -1.31 8.52 -26.73 -0.23 -1.54 16 28 C -0.13 -1.24 9.06 -26.73 -0.24 -1.48 16 29 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.33 6.56 -51.93 -0.34 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.09 0.63 7.42 -51.93 -0.39 0.25 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.08 8.14 -51.92 -0.42 0.65 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -33.45 391.22 -7.64 -41.09 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.69 Total: 8.57 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.75 Total: 6.59 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.88 Total: -45.48 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.96 Total: -32.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.45 -7.64 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760633498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.796 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds