Wall clock time and date at job start Tue Mar 31 2020 19:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.08999 * 109.47497 * 54.99391 * 3 2 1 5 5 C 1.53005 * 109.46923 * 294.99587 * 3 2 1 6 6 N 1.46502 * 109.47061 * 175.00115 * 3 2 1 7 7 N 1.39920 * 125.74752 * 59.97158 * 6 3 2 8 8 C 1.30431 * 108.92214 * 180.02562 * 7 6 3 9 9 C 1.41342 * 108.00902 * 359.97438 * 8 7 6 10 10 C 1.47288 * 126.42602 * 179.97438 * 9 8 7 11 11 O 1.21527 * 120.00151 * 185.38303 * 10 9 8 12 12 O 1.34753 * 120.00120 * 5.65720 * 10 9 8 13 13 C 1.45199 * 117.00357 * 179.72644 * 12 10 9 14 14 C 1.50698 * 109.47066 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00501 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99861 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00446 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99572 * 0.02562 * 17 16 14 19 19 C 1.38941 * 120.00332 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00102 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47107 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47447 * 120.00159 * 21 19 17 24 24 H 1.48509 * 109.47300 * 240.00418 * 21 19 17 25 25 C 1.34231 * 125.73705 * 240.26087 * 6 3 2 26 26 C 1.50699 * 126.30032 * 359.97438 * 25 6 3 27 27 C 1.53003 * 117.49893 * 312.61174 * 26 25 6 28 28 C 1.52994 * 117.49994 * 243.98835 * 26 25 6 29 29 H 1.09005 * 109.47002 * 60.00195 * 1 2 3 30 30 H 1.08995 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47571 * 300.00782 * 1 2 3 32 32 H 1.08997 * 109.47185 * 239.99333 * 2 1 3 33 33 H 1.09002 * 109.46551 * 119.99572 * 2 1 3 34 34 H 1.08999 * 109.46874 * 300.00185 * 5 3 2 35 35 H 1.08996 * 109.46879 * 59.99645 * 5 3 2 36 36 H 1.08995 * 109.47022 * 180.02562 * 5 3 2 37 37 H 1.07998 * 125.99950 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47024 * 299.99847 * 13 12 10 39 39 H 1.08994 * 109.46997 * 59.99994 * 13 12 10 40 40 H 0.97003 * 120.00411 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99854 * 180.02562 * 20 19 17 42 42 H 1.08999 * 115.54758 * 98.31550 * 26 25 6 43 43 H 1.09005 * 117.49712 * 359.97438 * 27 26 25 44 44 H 1.08992 * 117.50103 * 145.01698 * 27 26 25 45 45 H 1.08994 * 117.50358 * 214.97621 * 28 26 25 46 46 H 1.09008 * 117.49840 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 7 3.5000 1.4442 0.1204 7 7 4.3948 0.8486 -0.7754 8 6 5.6124 1.0479 -0.3524 9 6 5.5419 1.7905 0.8481 10 6 6.6808 2.2376 1.6681 11 8 6.4835 2.7876 2.7337 12 8 7.9414 2.0418 1.2342 13 6 9.0144 2.5135 2.0913 14 6 10.3424 2.2092 1.4473 15 8 10.3809 1.6503 0.3715 16 7 11.4874 2.5591 2.0662 17 6 12.6956 2.2819 1.4806 18 1 12.7299 1.7835 0.5231 19 6 13.8760 2.6421 2.1189 20 7 13.8343 3.2482 3.2842 21 14 15.5222 2.2650 1.3206 22 1 15.2973 1.5833 0.0206 23 1 16.2638 3.5314 1.0931 24 1 16.3143 1.3810 2.2132 25 6 4.2043 2.0129 1.1115 26 6 3.6398 2.7597 2.2924 27 6 2.5662 3.8138 2.0141 28 6 3.9778 4.2468 2.4150 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.0699 1.5874 -2.1492 35 1 0.5490 2.1251 -1.3971 36 1 1.9990 3.1540 -1.3077 37 1 6.5160 0.7063 -0.8352 38 1 8.9180 3.5897 2.2352 39 1 8.9556 2.0111 3.0568 40 1 11.4567 3.0065 2.9263 41 1 14.6584 3.5000 3.7296 42 1 3.5544 2.1853 3.2148 43 1 2.2686 3.9673 0.9767 44 1 1.7742 3.9329 2.7533 45 1 4.1144 4.6509 3.4180 46 1 4.6083 4.6851 1.6412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760633498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:15 Heat of formation + Delta-G solvation = -46.905013 kcal Electronic energy + Delta-G solvation = -28533.625822 eV Core-core repulsion = 24425.138134 eV Total energy + Delta-G solvation = -4108.487688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.79656 -41.17694 -39.90853 -38.13424 -37.50157 -37.09628 -36.00941 -33.40586 -32.76786 -31.56964 -30.32820 -29.61728 -26.77122 -25.93204 -24.84994 -23.90754 -23.32594 -22.67648 -21.41837 -20.99160 -20.31579 -20.03508 -18.84756 -17.87496 -17.77768 -17.56956 -17.06996 -16.61811 -16.34055 -16.15384 -16.00196 -15.74423 -15.57816 -15.36728 -14.84692 -14.67529 -14.33696 -13.89395 -13.74587 -13.60495 -13.54488 -13.22004 -13.06614 -12.93415 -12.84867 -12.75519 -12.45732 -12.43321 -12.41380 -12.10635 -12.01842 -11.80636 -11.75405 -11.57038 -11.50039 -11.36832 -11.26590 -10.48972 -10.45658 -10.10382 -9.85024 -8.51443 -6.01790 0.21503 0.94072 1.09332 1.35192 1.42380 1.54666 1.65196 1.88091 2.09556 2.31408 2.68359 3.08214 3.14074 3.22929 3.32071 3.75052 3.76075 3.81798 3.84792 3.90505 4.06102 4.09792 4.20715 4.21541 4.25102 4.30667 4.39470 4.41376 4.57299 4.64777 4.70158 4.74797 4.88304 4.95855 5.02041 5.06908 5.09628 5.17336 5.20143 5.32639 5.37810 5.38884 5.42747 5.79706 5.90675 6.39750 6.48454 6.80236 7.04399 7.41446 7.95346 8.65918 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.002161 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.077318 B =12955.773857 C =13722.912076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.142 3.858 4 H 0.133 0.867 5 C -0.160 4.160 6 N -0.338 5.338 7 N -0.306 5.306 8 C 0.096 3.904 9 C -0.303 4.303 10 C 0.539 3.461 11 O -0.525 6.525 12 O -0.343 6.343 13 C 0.076 3.924 14 C 0.438 3.562 15 O -0.617 6.617 16 N -0.559 5.559 17 C -0.336 4.336 18 H 0.083 0.917 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.998 3.002 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.269 1.269 25 C 0.201 3.799 26 C -0.120 4.120 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.199 0.801 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.281 0.719 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.741 0.241 -1.192 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.151 0.849 5 C -0.217 4.217 6 N -0.116 5.116 7 N -0.124 5.124 8 C -0.092 4.092 9 C -0.316 4.316 10 C 0.385 3.615 11 O -0.415 6.415 12 O -0.258 6.258 13 C -0.001 4.001 14 C 0.224 3.776 15 O -0.504 6.504 16 N -0.196 5.196 17 C -0.465 4.465 18 H 0.101 0.899 19 C -0.211 4.211 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.196 1.196 23 H -0.194 1.194 24 H -0.194 1.194 25 C 0.067 3.933 26 C -0.140 4.140 27 C -0.186 4.186 28 C -0.183 4.183 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.215 0.785 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.235 0.765 41 H 0.090 0.910 42 H 0.158 0.842 43 H 0.120 0.880 44 H 0.155 0.845 45 H 0.131 0.869 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.494 -0.445 -2.439 31.592 hybrid contribution 2.143 0.264 0.803 2.303 sum -29.352 -0.181 -1.636 29.398 Atomic orbital electron populations 1.21789 0.91903 1.03198 1.03485 1.21826 0.98478 0.93810 1.02545 1.22096 0.71546 0.99652 1.02450 0.84946 1.22194 1.04138 1.00185 0.95204 1.49069 1.07898 1.38839 1.15821 1.77159 0.99118 1.20694 1.15472 1.24348 0.96632 0.94931 0.93267 1.19073 0.90741 1.18928 1.02810 1.20262 0.82006 0.75440 0.83805 1.90775 1.85985 1.41696 1.23060 1.86582 1.14956 1.74776 1.49530 1.22462 0.82855 1.01755 0.93060 1.20132 0.85641 0.84706 0.87086 1.90522 1.87722 1.47901 1.24240 1.41737 1.04280 1.52436 1.21168 1.19751 0.83147 1.38290 1.05353 0.89857 1.26128 1.02873 0.95800 0.96271 1.69681 1.30661 1.39789 1.15420 0.84796 0.76538 0.78380 0.78149 1.19642 1.19421 1.19420 1.20799 0.89497 0.92615 0.90437 1.20635 1.06494 0.92131 0.94737 1.23369 0.92589 0.98602 1.04090 1.22838 0.98434 0.93337 1.03669 0.90872 0.91714 0.90925 0.91940 0.92413 0.92528 0.87142 0.92321 0.78456 0.87623 0.87661 0.76545 0.90989 0.84248 0.88014 0.84532 0.86941 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 71.98 0.70 -0.18 16 2 C -0.13 -1.55 5.65 30.59 0.17 -1.38 16 3 C 0.14 1.81 2.61 44.99 0.12 1.93 16 4 H 0.13 1.08 5.59 -2.39 -0.01 1.07 16 5 C -0.16 -1.71 9.20 71.98 0.66 -1.05 16 6 N -0.34 -7.24 3.25 -312.57 -1.02 -8.26 16 7 N -0.31 -8.22 12.33 -56.25 -0.69 -8.91 16 8 C 0.10 2.83 11.87 85.66 1.02 3.85 16 9 C -0.30 -9.24 6.12 -20.16 -0.12 -9.37 16 10 C 0.54 18.97 7.95 70.20 0.56 19.53 16 11 O -0.52 -18.48 14.56 19.75 0.29 -18.20 16 12 O -0.34 -13.84 9.61 -50.25 -0.48 -14.32 16 13 C 0.08 3.02 5.95 71.24 0.42 3.44 16 14 C 0.44 22.12 7.86 87.66 0.69 22.81 16 15 O -0.62 -36.20 16.08 15.73 0.25 -35.95 16 16 N -0.56 -29.36 5.29 -306.99 -1.62 -30.98 16 17 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 18 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 19 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 20 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 21 Si 1.00 42.77 29.55 68.60 2.03 44.80 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.20 4.83 6.45 42.16 0.27 5.10 16 26 C -0.12 -2.16 4.84 -11.54 -0.06 -2.22 16 27 C -0.15 -1.59 8.52 30.60 0.26 -1.33 16 28 C -0.14 -2.60 9.06 30.59 0.28 -2.32 16 29 H 0.07 0.29 6.57 -2.38 -0.02 0.27 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.51 6.56 -2.39 -0.02 0.49 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.20 5.70 8.06 -2.91 -0.02 5.67 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 40 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 41 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.10 0.97 7.42 -2.38 -0.02 0.96 16 44 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -74.13 391.22 5.56 -68.56 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.28 Total: 31.89 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.25 Total: 20.30 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -3.05 Total: -97.09 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: 0.06 Total: -68.47 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.13 5.56 -68.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760633498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds