Wall clock time and date at job start Tue Mar 31 2020 19:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 N 1.46494 * 109.47398 * 180.02562 * 3 2 1 5 5 N 1.39934 * 125.74362 * 269.69726 * 4 3 2 6 6 C 1.30434 * 108.91941 * 179.80757 * 5 4 3 7 7 C 1.41340 * 108.01084 * 0.43981 * 6 5 4 8 8 C 1.47284 * 126.42491 * 179.68576 * 7 6 5 9 9 O 1.21531 * 120.00018 * 174.05680 * 8 7 6 10 10 O 1.34751 * 120.00108 * 354.05744 * 8 7 6 11 11 C 1.45206 * 117.00398 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47590 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99538 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00057 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99965 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47142 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99749 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99927 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46888 * 60.00318 * 20 18 16 22 22 H 1.48499 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47126 * 300.00020 * 20 18 16 24 24 C 1.34229 * 125.74805 * 89.99435 * 4 3 2 25 25 C 1.50697 * 126.29099 * 359.97438 * 24 4 3 26 26 C 1.52998 * 117.50038 * 128.80053 * 25 24 4 27 27 C 1.53000 * 117.50330 * 60.14037 * 25 24 4 28 28 H 1.09003 * 109.46951 * 299.99926 * 1 2 3 29 29 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47568 * 60.00142 * 1 2 3 31 31 H 1.09000 * 109.47568 * 119.99858 * 2 1 3 32 32 H 1.09001 * 109.47419 * 239.99848 * 2 1 3 33 33 H 1.09006 * 109.47156 * 300.00187 * 3 2 1 34 34 H 1.09001 * 109.47065 * 59.99631 * 3 2 1 35 35 H 1.07996 * 125.99083 * 180.15616 * 6 5 4 36 36 H 1.09001 * 109.46327 * 300.00123 * 11 10 8 37 37 H 1.08998 * 109.47026 * 59.99850 * 11 10 8 38 38 H 0.97001 * 120.00146 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.46819 * 300.00234 * 15 14 12 40 40 H 1.09007 * 109.46744 * 60.00035 * 15 14 12 41 41 H 0.97000 * 119.99599 * 180.02562 * 19 18 16 42 42 H 1.09007 * 115.54732 * 274.46920 * 25 24 4 43 43 H 1.08998 * 117.49564 * 359.97438 * 26 25 24 44 44 H 1.09004 * 117.49822 * 145.01569 * 26 25 24 45 45 H 1.09003 * 117.50132 * 214.98375 * 27 25 24 46 46 H 1.09001 * 117.49599 * 359.97380 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3228 1.4484 1.1348 6 6 5.5712 1.4424 0.7568 7 6 5.5999 1.4426 -0.6563 8 6 6.8025 1.4434 -1.5066 9 8 6.6944 1.3345 -2.7122 10 8 8.0227 1.5648 -0.9478 11 6 9.1631 1.5583 -1.8467 12 6 10.4329 1.7037 -1.0483 13 8 10.3819 1.8025 0.1594 14 7 11.6252 1.7228 -1.6762 15 6 12.8597 1.8646 -0.9001 16 6 14.0433 1.8565 -1.8329 17 1 13.8911 1.7561 -2.8974 18 6 15.3203 1.9782 -1.3274 19 7 15.5054 2.1009 -0.0311 20 14 16.7873 1.9688 -2.4837 21 1 16.6709 3.0988 -3.4401 22 1 18.0385 2.1125 -1.6970 23 1 16.8188 0.6872 -3.2331 24 6 4.2887 1.4426 -1.0903 25 6 3.8233 1.4421 -2.5237 26 6 4.4136 2.4998 -3.4584 27 6 2.9621 2.6186 -2.9873 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 6.4318 1.4423 1.4091 36 1 9.1856 0.6183 -2.3980 37 1 9.0780 2.3887 -2.5476 38 1 11.6660 1.6434 -2.6421 39 1 12.8367 2.8052 -0.3497 40 1 12.9449 1.0349 -0.1983 41 1 16.4037 2.1869 0.3244 42 1 3.6057 0.4615 -2.9469 43 1 5.1382 3.1963 -3.0365 44 1 4.5840 2.2151 -4.4967 45 1 2.1780 2.4121 -3.7158 46 1 2.7316 3.3928 -2.2555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766168040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:18 Heat of formation + Delta-G solvation = -28.772535 kcal Electronic energy + Delta-G solvation = -27970.339448 eV Core-core repulsion = 23862.638043 eV Total energy + Delta-G solvation = -4107.701405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89688 -40.02487 -38.56053 -37.43671 -36.09537 -35.77659 -34.20047 -32.38120 -32.03822 -30.67167 -29.12820 -27.24335 -26.42591 -24.28796 -23.05354 -22.78545 -22.35114 -22.23793 -20.81328 -19.88668 -19.52384 -18.06850 -17.32832 -16.90223 -16.45865 -16.22492 -15.88898 -15.60585 -15.26877 -15.13599 -15.00870 -14.78694 -14.44342 -14.19009 -14.04692 -13.56010 -13.04471 -12.85877 -12.79066 -12.56257 -12.55199 -12.27233 -11.96715 -11.94565 -11.87266 -11.69870 -11.55744 -11.42517 -11.01256 -10.95675 -10.87789 -10.57578 -10.52937 -10.32846 -10.30863 -9.70816 -9.42996 -9.11719 -8.96802 -8.75200 -7.94646 -6.17197 -4.24580 1.09725 1.87579 1.91336 2.64527 3.10964 3.25088 3.26076 3.30728 3.32056 3.32605 3.91441 3.98602 4.14316 4.25220 4.36329 4.43895 4.51389 4.53251 4.63623 4.79458 4.85446 4.90240 4.93512 5.10998 5.17308 5.18836 5.20387 5.23888 5.33175 5.40764 5.42362 5.47006 5.52062 5.59898 5.64667 5.69835 5.82048 6.19821 6.46371 6.49469 7.26209 7.28360 7.35521 7.49207 7.63056 7.90352 7.94908 8.54374 8.74440 9.01070 9.41694 10.92877 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.001893 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.707316 B =14789.369279 C =15511.382629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.126 3.874 4 N -0.353 5.353 5 N -0.298 5.298 6 C 0.108 3.892 7 C -0.274 4.274 8 C 0.541 3.459 9 O -0.513 6.513 10 O -0.326 6.326 11 C 0.053 3.947 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.193 3.807 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.183 4.183 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.202 0.798 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.267 0.733 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.717 -1.673 -5.524 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.130 5.130 5 N -0.116 5.116 6 C -0.080 4.080 7 C -0.287 4.287 8 C 0.386 3.614 9 O -0.403 6.403 10 O -0.241 6.241 11 C -0.025 4.025 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.358 5.358 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.060 3.940 25 C -0.129 4.129 26 C -0.157 4.157 27 C -0.220 4.220 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.219 0.781 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.225 0.775 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -32.530 -1.595 -3.783 32.788 hybrid contribution 1.586 -0.155 -1.720 2.344 sum -30.945 -1.750 -5.503 31.479 Atomic orbital electron populations 1.21691 0.93990 1.02693 1.02305 1.21924 0.96921 0.95414 1.03676 1.21980 0.73384 0.99069 1.05003 1.48561 1.06881 1.54446 1.03125 1.77305 1.01886 1.25542 1.06870 1.24334 0.95340 0.94508 0.93774 1.18972 0.90175 1.26097 0.93413 1.19925 0.82681 0.72740 0.86044 1.90821 1.87186 1.47136 1.15153 1.86597 1.13980 1.83438 1.40063 1.22807 0.83388 1.04389 0.91909 1.19917 0.84536 0.78797 0.88502 1.90705 1.87020 1.49436 1.13984 1.46353 1.06449 1.71919 1.11047 1.19164 0.78284 0.97776 0.91657 1.21179 0.90815 1.52915 0.93493 0.91819 1.24950 0.99069 0.94638 0.95314 1.69965 1.22670 1.48059 1.11489 0.86449 0.81223 0.78683 0.80401 1.20051 1.21066 1.20056 1.20480 0.89449 0.94706 0.89350 1.20499 1.07026 0.96976 0.88364 1.22831 0.94349 0.99136 0.99361 1.23215 0.95851 0.99104 1.03842 0.92162 0.91792 0.92212 0.90719 0.91168 0.88333 0.88231 0.78092 0.88591 0.88622 0.77466 0.95277 0.95270 0.92340 0.85261 0.88430 0.87545 0.87743 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.14 -0.76 6.26 -26.73 -0.17 -0.92 16 3 C 0.13 0.77 6.21 -4.04 -0.03 0.75 16 4 N -0.35 -3.51 3.58 -56.59 -0.20 -3.71 16 5 N -0.30 -3.66 12.50 30.87 0.39 -3.27 16 6 C 0.11 1.37 11.87 -16.97 -0.20 1.17 16 7 C -0.27 -3.59 6.10 -105.08 -0.64 -4.23 16 8 C 0.54 7.94 7.83 34.41 0.27 8.20 16 9 O -0.51 -7.60 13.44 -19.29 -0.26 -7.86 16 10 O -0.33 -5.35 9.61 -47.31 -0.45 -5.81 16 11 C 0.05 0.82 5.95 36.01 0.21 1.03 16 12 C 0.50 10.10 7.91 -10.99 -0.09 10.01 16 13 O -0.53 -13.13 16.50 -14.10 -0.23 -13.37 16 14 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 15 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 16 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.19 2.08 6.43 -81.59 -0.52 1.55 16 25 C -0.11 -0.91 5.18 -91.77 -0.47 -1.38 16 26 C -0.12 -1.02 8.06 -26.70 -0.22 -1.24 16 27 C -0.18 -1.11 8.95 -26.69 -0.24 -1.35 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.42 6.33 -51.93 -0.33 0.09 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.10 1.02 7.68 -51.93 -0.40 0.62 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -34.49 396.18 -8.52 -43.01 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.93 Total: 2.86 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -2.17 Total: 6.71 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.58 Total: -47.23 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.95 Total: -27.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.49 -8.52 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766168040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.233 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds