Wall clock time and date at job start Tue Mar 31 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47341 * 120.00157 * 2 1 3 5 5 N 1.46497 * 109.47155 * 174.99979 * 4 2 1 6 6 N 1.39939 * 125.74117 * 270.16452 * 5 4 2 7 7 C 1.30429 * 108.91257 * 180.25031 * 6 5 4 8 8 C 1.41335 * 108.01970 * 359.77160 * 7 6 5 9 9 C 1.47289 * 126.43340 * 179.97438 * 8 7 6 10 10 O 1.21520 * 120.00538 * 174.59346 * 9 8 7 11 11 O 1.34754 * 119.99298 * 354.59675 * 9 8 7 12 12 C 1.45202 * 116.99645 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47041 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00022 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99965 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99981 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99933 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00098 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99531 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47142 * 59.99452 * 20 18 16 22 22 H 1.48495 * 109.47357 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47125 * 299.99915 * 20 18 16 24 24 C 1.34219 * 125.74614 * 90.00480 * 5 4 2 25 25 C 1.50707 * 126.29409 * 0.02562 * 24 5 4 26 26 C 1.52993 * 117.49508 * 48.39588 * 25 24 5 27 27 C 1.52994 * 117.49662 * 117.05702 * 25 24 5 28 28 H 1.09002 * 109.46802 * 300.00072 * 1 2 3 29 29 H 1.09006 * 109.46859 * 59.99599 * 1 2 3 30 30 H 1.08997 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47022 * 240.00340 * 2 1 3 32 32 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47165 * 299.99966 * 3 2 1 34 34 H 1.08997 * 109.46879 * 60.00252 * 3 2 1 35 35 H 1.09002 * 109.46533 * 54.99796 * 4 2 1 36 36 H 1.09001 * 109.47064 * 295.00211 * 4 2 1 37 37 H 1.08003 * 125.99229 * 179.72627 * 7 6 5 38 38 H 1.09003 * 109.47104 * 299.99814 * 12 11 9 39 39 H 1.08999 * 109.47181 * 59.99950 * 12 11 9 40 40 H 0.97004 * 120.00015 * 359.97438 * 15 13 12 41 41 H 0.97004 * 119.99474 * 180.02562 * 19 18 16 42 42 H 1.09002 * 115.55001 * 262.72514 * 25 24 5 43 43 H 1.09009 * 117.49961 * 214.99907 * 26 25 24 44 44 H 1.09000 * 117.50440 * 0.02562 * 26 25 24 45 45 H 1.09002 * 117.49934 * 359.97438 * 27 25 24 46 46 H 1.08998 * 117.50224 * 144.97786 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 7 4.2214 -1.8799 0.6177 7 6 5.4966 -1.6413 0.7519 8 6 5.6420 -0.4050 1.4211 9 6 6.9107 0.2507 1.7815 10 8 6.9024 1.3632 2.2704 11 8 8.0807 -0.3832 1.5690 12 6 9.2914 0.3233 1.9478 13 6 10.4912 -0.5349 1.6392 14 8 10.3407 -1.6339 1.1487 15 7 11.7315 -0.0811 1.9082 16 6 12.8229 -0.8615 1.6269 17 1 12.6889 -1.8401 1.1902 18 6 14.1016 -0.3939 1.9047 19 7 14.2646 0.7967 2.4366 20 14 15.5887 -1.4575 1.5221 21 1 15.6235 -1.7550 0.0677 22 1 16.8269 -0.7349 1.9090 23 1 15.4978 -2.7283 2.2851 24 6 4.3710 0.0729 1.6743 25 6 4.0257 1.3636 2.3716 26 6 2.9883 1.3042 3.4945 27 6 4.4666 1.5194 3.8283 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -1.7198 1.2950 36 1 1.7517 -0.1584 2.1370 37 1 6.3006 -2.2773 0.4120 38 1 9.3579 1.2562 1.3881 39 1 9.2660 0.5411 3.0155 40 1 11.8519 0.7980 2.3001 41 1 15.1572 1.1233 2.6302 42 1 4.0377 2.2548 1.7441 43 1 2.3177 2.1563 3.6059 44 1 2.5559 0.3316 3.7294 45 1 5.0061 0.6883 4.2825 46 1 4.7690 2.5130 4.1592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768648101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:47 Heat of formation + Delta-G solvation = -26.400326 kcal Electronic energy + Delta-G solvation = -28683.035035 eV Core-core repulsion = 24575.436497 eV Total energy + Delta-G solvation = -4107.598538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84106 -39.72372 -37.99680 -37.48315 -36.73761 -35.73357 -33.93490 -32.32883 -31.32236 -30.53886 -28.48166 -27.69162 -26.89342 -24.67571 -23.80863 -22.99185 -22.34138 -21.40018 -20.28659 -19.52628 -19.38955 -17.99322 -17.81480 -16.74898 -16.22023 -16.17883 -15.91960 -15.52011 -15.31211 -14.88012 -14.73701 -14.41414 -14.15097 -14.04458 -13.90033 -13.57661 -13.24570 -12.93165 -12.73777 -12.51568 -12.34508 -12.18244 -11.93125 -11.78338 -11.70044 -11.57390 -11.52098 -11.40568 -11.20501 -11.07108 -10.78041 -10.48384 -10.45344 -10.26139 -10.23918 -10.11653 -9.56468 -9.54264 -8.80886 -8.44712 -8.02694 -6.45003 -3.86707 1.25111 2.02041 2.06432 2.95771 3.19208 3.25880 3.31186 3.31618 3.40661 3.81147 4.00656 4.09483 4.18052 4.24046 4.49576 4.50344 4.53683 4.64711 4.85040 4.89918 4.91376 5.02857 5.12706 5.16665 5.18052 5.20618 5.23743 5.32050 5.38138 5.42880 5.55685 5.59890 5.60905 5.74092 5.76195 5.80297 5.81340 5.83330 5.87451 6.14202 6.34570 6.59734 6.80393 7.41473 7.52382 7.97174 8.16001 8.54920 9.12414 9.45432 9.95893 10.72277 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.002174 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.036911 B =12876.986717 C =13511.481224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.155 4.155 4 C 0.126 3.874 5 N -0.351 5.351 6 N -0.300 5.300 7 C 0.108 3.892 8 C -0.271 4.271 9 C 0.538 3.462 10 O -0.517 6.517 11 O -0.323 6.323 12 C 0.064 3.936 13 C 0.440 3.560 14 O -0.575 6.575 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.105 0.895 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.192 3.808 25 C -0.099 4.099 26 C -0.185 4.185 27 C -0.130 4.130 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.202 0.798 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.972 3.785 0.364 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.212 4.212 4 C 0.006 3.994 5 N -0.129 5.129 6 N -0.118 5.118 7 C -0.080 4.080 8 C -0.284 4.284 9 C 0.383 3.617 10 O -0.407 6.407 11 O -0.238 6.238 12 C -0.013 4.013 13 C 0.225 3.775 14 O -0.459 6.459 15 N -0.192 5.192 16 C -0.430 4.430 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.059 3.941 25 C -0.119 4.119 26 C -0.222 4.222 27 C -0.167 4.167 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.219 0.781 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -28.894 2.617 -0.222 29.014 hybrid contribution 1.632 0.732 0.317 1.816 sum -27.263 3.349 0.095 27.468 Atomic orbital electron populations 1.21772 0.93570 1.02294 1.02566 1.21523 0.96565 0.97117 0.97966 1.22007 1.01674 0.95186 1.02329 1.22106 0.74006 1.03232 1.00083 1.48481 1.06540 1.14898 1.42937 1.77283 1.04990 1.08901 1.20626 1.24327 0.94212 0.94751 0.94675 1.19026 0.90248 1.00615 1.18473 1.19946 0.83534 0.83305 0.74941 1.90799 1.88050 1.19606 1.42254 1.86587 1.13766 1.46978 1.76431 1.22683 0.82043 0.95271 1.01335 1.19366 0.83654 0.88379 0.86130 1.90556 1.85420 1.21677 1.48272 1.41696 1.03795 1.18571 1.55135 1.19670 0.83321 1.00900 1.39143 0.87702 1.25302 0.99144 0.96583 0.96807 1.69613 1.24224 1.17367 1.42705 0.85861 0.79554 0.79384 0.79099 1.19794 1.20930 1.19793 1.20411 0.88577 0.91087 0.94033 1.20544 1.06026 0.93474 0.91849 1.23222 0.93463 1.03363 1.02181 1.22885 0.95104 1.04212 0.94535 0.92196 0.91805 0.92212 0.90093 0.92301 0.92161 0.92023 0.88368 0.88059 0.78128 0.89645 0.89659 0.77174 0.91656 0.84998 0.87695 0.88786 0.88549 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.19 37.16 0.34 -0.28 16 2 C -0.11 -0.72 3.13 -90.62 -0.28 -1.00 16 3 C -0.15 -1.03 7.89 37.16 0.29 -0.73 16 4 C 0.13 0.90 5.64 -4.04 -0.02 0.88 16 5 N -0.35 -3.84 3.41 -56.59 -0.19 -4.03 16 6 N -0.30 -4.00 12.50 30.87 0.39 -3.61 16 7 C 0.11 1.52 11.87 -16.97 -0.20 1.32 16 8 C -0.27 -4.00 6.12 -105.08 -0.64 -4.65 16 9 C 0.54 9.21 7.95 34.41 0.27 9.48 16 10 O -0.52 -9.01 14.48 -19.28 -0.28 -9.29 16 11 O -0.32 -6.30 9.61 -47.32 -0.45 -6.76 16 12 C 0.06 1.26 5.95 36.01 0.21 1.47 16 13 C 0.44 10.78 7.86 -10.98 -0.09 10.69 16 14 O -0.58 -16.17 16.08 -14.11 -0.23 -16.40 16 15 N -0.55 -14.20 5.29 -10.96 -0.06 -14.26 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 17 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 19 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 20 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.19 2.30 5.20 -81.59 -0.42 1.87 16 25 C -0.10 -0.95 3.41 -91.78 -0.31 -1.26 16 26 C -0.19 -1.25 8.80 -26.70 -0.23 -1.49 16 27 C -0.13 -1.23 8.96 -26.70 -0.24 -1.47 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.52 5.59 -51.93 -0.29 0.23 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.33 8.04 -51.93 -0.42 -0.09 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.55 5.09 -51.93 -0.26 0.28 16 37 H 0.20 2.65 8.06 -52.48 -0.42 2.23 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.13 1.20 7.46 -51.93 -0.39 0.82 16 43 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.09 0.60 6.89 -51.93 -0.36 0.24 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -33.42 386.51 -7.49 -40.91 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.62 Total: 8.44 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.57 Total: 6.84 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.86 Total: -45.48 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.96 Total: -32.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.42 -7.49 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768648101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.507 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds