Wall clock time and date at job start Tue Mar 31 2020 18:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 C 1.53002 * 109.46951 * 239.99917 * 2 1 3 5 5 O 1.45196 * 109.47037 * 120.00192 * 2 1 3 6 6 C 1.34643 * 117.00360 * 59.99842 * 5 2 1 7 7 O 1.21507 * 119.99560 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00176 * 180.02562 * 6 5 2 9 9 C 1.48144 * 127.83727 * 180.02562 * 8 6 5 10 10 C 1.54395 * 104.61818 * 140.41303 * 9 8 6 11 11 H 1.09003 * 118.17829 * 163.52975 * 10 9 8 12 12 C 1.52990 * 118.11991 * 320.54457 * 10 9 8 13 13 H 1.09000 * 117.44901 * 343.93167 * 12 10 9 14 14 C 1.50710 * 117.44124 * 199.18861 * 12 10 9 15 15 O 1.21286 * 119.99634 * 290.99893 * 14 12 10 16 16 N 1.34779 * 119.99942 * 111.27258 * 14 12 10 17 17 C 1.37098 * 120.00032 * 179.72616 * 16 14 12 18 18 H 1.08004 * 119.99632 * 20.19837 * 17 16 14 19 19 C 1.38943 * 120.00163 * 200.19709 * 17 16 14 20 20 N 1.31414 * 119.99801 * 21.44313 * 19 17 16 21 21 Si 1.86797 * 120.00001 * 201.44749 * 19 17 16 22 22 H 1.48499 * 109.47108 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46948 * 120.00032 * 21 19 17 24 24 H 1.48500 * 109.47298 * 239.99464 * 21 19 17 25 25 C 1.46498 * 119.99864 * 359.72906 * 16 14 12 26 26 C 1.47199 * 109.47413 * 83.96975 * 25 16 14 27 27 N 6.16072 * 142.82143 * 191.28054 * 2 1 3 28 28 C 1.52994 * 60.49846 * 91.56345 * 12 10 9 29 29 H 1.09000 * 119.54290 * 111.74373 * 28 12 10 30 30 C 1.50512 * 127.02221 * 359.15185 * 8 6 5 31 31 H 1.09001 * 109.47630 * 300.00003 * 1 2 3 32 32 H 1.09004 * 109.47135 * 60.00046 * 1 2 3 33 33 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46930 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47239 * 299.99981 * 3 2 1 36 36 H 1.08995 * 109.47111 * 60.00384 * 3 2 1 37 37 H 1.09001 * 109.47468 * 300.00132 * 4 2 1 38 38 H 1.08998 * 109.47155 * 60.00758 * 4 2 1 39 39 H 1.09007 * 109.46834 * 179.97438 * 4 2 1 40 40 H 1.09000 * 110.40963 * 21.62878 * 9 8 6 41 41 H 1.09000 * 110.40957 * 259.20114 * 9 8 6 42 42 H 0.96999 * 119.99678 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.46861 * 203.96935 * 25 16 14 44 44 H 1.09000 * 109.47267 * 323.96823 * 25 16 14 45 45 H 1.08996 * 109.10283 * 101.20384 * 30 8 6 46 46 H 1.09007 * 112.78773 * 338.06336 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6521 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4171 9 6 1.7763 -4.0778 2.7569 10 6 3.1019 -4.6210 3.3326 11 1 3.0733 -5.5493 3.9032 12 6 4.4092 -4.1831 2.6693 13 1 4.3442 -3.7361 1.6773 14 6 5.6328 -5.0258 2.9226 15 8 6.1360 -5.0478 4.0259 16 7 6.1709 -5.7504 1.9217 17 6 7.2873 -6.5126 2.1507 18 1 7.5475 -6.7999 3.1588 19 6 8.0839 -6.9154 1.0860 20 7 8.0432 -6.2574 -0.0508 21 14 9.2126 -8.3923 1.2704 22 1 9.0729 -8.9545 2.6378 23 1 8.8426 -9.4261 0.2705 24 1 10.6193 -7.9710 1.0492 25 6 5.5630 -5.7236 0.5891 26 6 6.0583 -4.5527 -0.1528 27 7 6.4385 -3.6510 -0.7283 28 6 3.8533 -3.3761 3.8443 29 1 4.3846 -3.3770 4.7960 30 6 2.9470 -2.1663 3.5315 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7209 -1.2495 40 1 1.4943 -4.6336 1.8626 41 1 0.9857 -4.1337 3.5052 42 1 8.5996 -6.5384 -0.7940 43 1 5.8279 -6.6335 0.0506 44 1 4.4791 -5.6609 0.6854 45 1 2.3268 -1.9232 4.3942 46 1 3.5493 -1.3055 3.2407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:51 Heat of formation + Delta-G solvation = -30.542363 kcal Electronic energy + Delta-G solvation = -30068.362906 eV Core-core repulsion = 25960.584755 eV Total energy + Delta-G solvation = -4107.778150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93271 -39.87971 -38.22783 -36.69970 -35.76380 -34.39172 -34.18308 -32.90748 -31.83370 -28.64062 -27.61954 -27.52979 -27.44268 -27.01079 -24.97171 -22.63855 -21.37296 -20.11938 -19.56445 -18.70512 -17.99432 -17.80969 -17.05532 -16.58668 -16.29535 -16.05994 -15.18927 -15.03088 -14.52423 -14.35677 -14.27003 -13.92686 -13.66237 -13.40643 -13.29334 -13.00633 -12.97843 -12.61487 -12.40501 -12.30246 -12.13634 -12.03690 -11.99142 -11.92500 -11.63453 -11.52666 -11.50635 -11.35311 -11.24529 -11.17683 -10.60131 -10.48718 -10.42214 -10.37378 -10.04925 -9.92361 -9.68777 -9.29949 -8.95208 -8.66937 -8.06984 -6.54353 -4.05204 1.99860 2.85821 3.00347 3.19918 3.25479 3.26055 3.63987 3.75410 3.94399 4.01475 4.09097 4.32399 4.61143 4.65742 4.78437 4.80221 4.89748 4.97316 5.03082 5.05347 5.24059 5.31726 5.33682 5.43177 5.44772 5.54800 5.57334 5.59842 5.68164 5.72267 5.74903 5.77781 5.78378 5.85948 5.91851 6.08471 6.16394 6.26347 6.27885 6.37011 6.44261 6.44982 7.43209 7.44798 7.86810 8.23258 8.32424 8.75090 8.94896 9.14920 9.69399 10.51817 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.003418 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.309888 B = 8189.670333 C = 9185.271201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.361 6.361 6 C 0.675 3.325 7 O -0.569 6.569 8 N -0.617 5.617 9 C 0.157 3.843 10 C -0.159 4.159 11 H 0.136 0.864 12 C -0.132 4.132 13 H 0.107 0.893 14 C 0.485 3.515 15 O -0.571 6.571 16 N -0.435 5.435 17 C -0.316 4.316 18 H 0.109 0.891 19 C 0.033 3.967 20 N -0.873 5.873 21 Si 0.927 3.073 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.282 1.282 25 C 0.223 3.777 26 C 0.244 3.756 27 N -0.469 5.469 28 C -0.150 4.150 29 H 0.138 0.862 30 C 0.134 3.866 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.273 0.727 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 7.829 1.766 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.275 6.275 6 C 0.431 3.569 7 O -0.459 6.459 8 N -0.359 5.359 9 C 0.036 3.964 10 C -0.179 4.179 11 H 0.154 0.846 12 C -0.154 4.154 13 H 0.125 0.875 14 C 0.273 3.727 15 O -0.454 6.454 16 N -0.154 5.154 17 C -0.443 4.443 18 H 0.127 0.873 19 C -0.171 4.171 20 N -0.511 5.511 21 Si 0.753 3.247 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.208 1.208 25 C 0.096 3.904 26 C -0.074 4.074 27 N -0.149 5.149 28 C -0.170 4.170 29 H 0.156 0.844 30 C 0.012 3.988 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.916 9.081 0.873 17.484 hybrid contribution 0.716 -0.968 -0.104 1.209 sum -14.199 8.113 0.769 16.372 Atomic orbital electron populations 1.22506 0.94119 1.04990 1.02257 1.22065 0.94176 0.91525 0.82268 1.21854 1.02529 0.92500 1.02885 1.22525 1.02044 1.03421 0.96208 1.86307 1.71514 1.23450 1.46266 1.17350 0.78526 0.80442 0.80563 1.90892 1.41904 1.70532 1.42557 1.48090 1.52782 1.13311 1.21700 1.21782 0.95400 0.78372 1.00849 1.23576 0.89902 0.99671 1.04714 0.84622 1.22226 0.93346 1.01680 0.98144 0.87475 1.19029 0.85925 0.81820 0.85902 1.90538 1.64525 1.66430 1.23880 1.43517 1.25813 1.39973 1.06067 1.19749 1.02192 1.26467 0.95846 0.87323 1.25319 0.97528 0.98790 0.95472 1.69868 1.39960 1.36707 1.04526 0.85852 0.79265 0.80774 0.78779 1.19030 1.20400 1.20849 1.18694 0.94769 0.92982 0.84000 1.29215 0.91617 0.93381 0.93208 1.80850 1.10195 1.13813 1.10056 1.23427 1.01416 0.91805 1.00314 0.84409 1.22399 0.91004 0.96701 0.88685 0.92331 0.91243 0.89386 0.91318 0.90200 0.91584 0.89338 0.91258 0.91871 0.89058 0.89641 0.91592 0.85848 0.89718 0.89780 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.15 0.31 -1.61 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 4 C -0.18 -2.33 8.37 37.16 0.31 -2.02 16 5 O -0.36 -5.08 9.47 -40.33 -0.38 -5.46 16 6 C 0.68 10.14 8.01 54.05 0.43 10.57 16 7 O -0.57 -9.39 12.15 -19.28 -0.23 -9.62 16 8 N -0.62 -8.22 2.95 -173.08 -0.51 -8.73 16 9 C 0.16 1.82 7.00 -2.41 -0.02 1.80 16 10 C -0.16 -2.10 6.88 -89.30 -0.61 -2.71 16 11 H 0.14 1.69 8.14 -51.93 -0.42 1.27 16 12 C -0.13 -2.29 4.16 -91.77 -0.38 -2.67 16 13 H 0.11 1.97 6.56 -51.93 -0.34 1.63 16 14 C 0.48 10.77 7.34 -10.98 -0.08 10.69 16 15 O -0.57 -14.43 16.00 5.55 0.09 -14.34 16 16 N -0.43 -10.06 2.60 -117.93 -0.31 -10.37 16 17 C -0.32 -8.03 9.27 -14.94 -0.14 -8.16 16 18 H 0.11 2.90 7.43 -52.48 -0.39 2.51 16 19 C 0.03 0.81 4.84 -17.47 -0.08 0.73 16 20 N -0.87 -22.08 9.58 55.50 0.53 -21.55 16 21 Si 0.93 19.39 29.60 -169.99 -5.03 14.36 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 C 0.22 4.51 4.80 -6.83 -0.03 4.48 16 26 C 0.24 5.55 12.66 -20.78 -0.26 5.28 16 27 N -0.47 -11.43 18.53 42.12 0.78 -10.65 16 28 C -0.15 -2.13 6.54 -89.31 -0.58 -2.71 16 29 H 0.14 2.02 7.80 -51.93 -0.40 1.62 16 30 C 0.13 1.59 7.10 -1.08 -0.01 1.58 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.09 7.88 -51.93 -0.41 0.69 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 43 H 0.12 2.52 6.63 -51.93 -0.34 2.18 16 44 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.12 8.00 -51.93 -0.42 0.71 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -31.92 380.31 -6.90 -38.82 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.64 Total: 6.01 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -0.92 Total: 15.80 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.50 Total: -51.30 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.53 Total: -29.42 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.92 -6.90 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.274 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds