Wall clock time and date at job start Tue Mar 31 2020 18:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 C 1.53002 * 109.46951 * 239.99917 * 2 1 3 5 5 O 1.45196 * 109.47037 * 120.00192 * 2 1 3 6 6 C 1.34643 * 117.00360 * 59.99842 * 5 2 1 7 7 O 1.21507 * 119.99560 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00176 * 180.02562 * 6 5 2 9 9 C 1.48144 * 127.83727 * 180.02562 * 8 6 5 10 10 C 1.54395 * 104.61818 * 140.41303 * 9 8 6 11 11 H 1.09003 * 118.17829 * 163.52975 * 10 9 8 12 12 C 1.52990 * 118.11991 * 320.54457 * 10 9 8 13 13 H 1.09000 * 117.44901 * 343.93167 * 12 10 9 14 14 C 1.50710 * 117.44124 * 199.18861 * 12 10 9 15 15 O 1.21286 * 119.99634 * 290.99893 * 14 12 10 16 16 N 1.34779 * 119.99942 * 111.27258 * 14 12 10 17 17 C 1.37098 * 120.00032 * 179.72616 * 16 14 12 18 18 H 1.08004 * 119.99632 * 20.19837 * 17 16 14 19 19 C 1.38943 * 120.00163 * 200.19709 * 17 16 14 20 20 N 1.31414 * 119.99801 * 21.44313 * 19 17 16 21 21 Si 1.86797 * 120.00001 * 201.44749 * 19 17 16 22 22 H 1.48499 * 109.47108 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46948 * 120.00032 * 21 19 17 24 24 H 1.48500 * 109.47298 * 239.99464 * 21 19 17 25 25 C 1.46498 * 119.99864 * 359.72906 * 16 14 12 26 26 C 1.47199 * 109.47413 * 83.96975 * 25 16 14 27 27 N 6.16072 * 142.82143 * 191.28054 * 2 1 3 28 28 C 1.52994 * 60.49846 * 91.56345 * 12 10 9 29 29 H 1.09000 * 119.54290 * 111.74373 * 28 12 10 30 30 C 1.50512 * 127.02221 * 359.15185 * 8 6 5 31 31 H 1.09001 * 109.47630 * 300.00003 * 1 2 3 32 32 H 1.09004 * 109.47135 * 60.00046 * 1 2 3 33 33 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46930 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47239 * 299.99981 * 3 2 1 36 36 H 1.08995 * 109.47111 * 60.00384 * 3 2 1 37 37 H 1.09001 * 109.47468 * 300.00132 * 4 2 1 38 38 H 1.08998 * 109.47155 * 60.00758 * 4 2 1 39 39 H 1.09007 * 109.46834 * 179.97438 * 4 2 1 40 40 H 1.09000 * 110.40963 * 21.62878 * 9 8 6 41 41 H 1.09000 * 110.40957 * 259.20114 * 9 8 6 42 42 H 0.96999 * 119.99678 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.46861 * 203.96935 * 25 16 14 44 44 H 1.09000 * 109.47267 * 323.96823 * 25 16 14 45 45 H 1.08996 * 109.10283 * 101.20384 * 30 8 6 46 46 H 1.09007 * 112.78773 * 338.06336 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6521 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4171 9 6 1.7763 -4.0778 2.7569 10 6 3.1019 -4.6210 3.3326 11 1 3.0733 -5.5493 3.9032 12 6 4.4092 -4.1831 2.6693 13 1 4.3442 -3.7361 1.6773 14 6 5.6328 -5.0258 2.9226 15 8 6.1360 -5.0478 4.0259 16 7 6.1709 -5.7504 1.9217 17 6 7.2873 -6.5126 2.1507 18 1 7.5475 -6.7999 3.1588 19 6 8.0839 -6.9154 1.0860 20 7 8.0432 -6.2574 -0.0508 21 14 9.2126 -8.3923 1.2704 22 1 9.0729 -8.9545 2.6378 23 1 8.8426 -9.4261 0.2705 24 1 10.6193 -7.9710 1.0492 25 6 5.5630 -5.7236 0.5891 26 6 6.0583 -4.5527 -0.1528 27 7 6.4385 -3.6510 -0.7283 28 6 3.8533 -3.3761 3.8443 29 1 4.3846 -3.3770 4.7960 30 6 2.9470 -2.1663 3.5315 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7209 -1.2495 40 1 1.4943 -4.6336 1.8626 41 1 0.9857 -4.1337 3.5052 42 1 8.5996 -6.5384 -0.7940 43 1 5.8279 -6.6335 0.0506 44 1 4.4791 -5.6609 0.6854 45 1 2.3268 -1.9232 4.3942 46 1 3.5493 -1.3055 3.2407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:50 Heat of formation + Delta-G solvation = -49.079524 kcal Electronic energy + Delta-G solvation = -30069.166737 eV Core-core repulsion = 25960.584755 eV Total energy + Delta-G solvation = -4108.581982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03499 -41.17067 -39.71187 -37.85989 -37.52862 -36.21471 -35.22924 -34.10608 -33.64335 -29.61796 -29.33898 -28.37516 -28.37059 -28.28980 -26.61162 -23.93431 -22.55166 -21.19714 -20.70352 -20.08541 -19.75178 -18.98646 -18.55258 -17.99489 -17.57164 -17.34116 -16.73425 -16.06879 -16.03888 -15.72135 -15.48461 -15.10877 -14.94868 -14.78716 -14.62234 -14.34336 -14.30676 -13.89087 -13.67243 -13.44021 -13.38555 -13.30443 -13.12922 -13.08384 -12.92098 -12.89028 -12.85247 -12.54190 -12.49539 -12.39744 -12.26609 -12.26435 -12.06378 -11.39223 -11.19805 -11.16635 -11.10263 -10.83669 -10.51457 -9.96248 -9.90809 -8.43473 -6.01316 1.02077 1.34064 1.47428 1.60223 1.66666 1.76037 1.93105 2.18381 2.32233 2.63780 2.73502 2.90660 3.02217 3.49465 3.52800 3.74038 3.75721 3.79125 3.82160 3.93941 3.95590 4.19247 4.34988 4.43128 4.50528 4.55646 4.58654 4.61869 4.71762 4.75525 4.77719 4.80579 4.83126 4.83396 4.86987 4.90838 5.07893 5.10445 5.26512 5.27978 5.34912 5.45928 5.46158 6.00946 6.35219 6.39206 6.93012 7.07637 7.24486 7.30765 7.88208 8.61101 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.003418 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.309888 B = 8189.670333 C = 9185.271201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.668 3.332 7 O -0.590 6.590 8 N -0.620 5.620 9 C 0.159 3.841 10 C -0.127 4.127 11 H 0.149 0.851 12 C -0.160 4.160 13 H 0.096 0.904 14 C 0.484 3.516 15 O -0.609 6.609 16 N -0.449 5.449 17 C -0.342 4.342 18 H 0.087 0.913 19 C 0.004 3.996 20 N -0.894 5.894 21 Si 0.989 3.011 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.289 1.289 25 C 0.228 3.772 26 C 0.255 3.745 27 N -0.504 5.504 28 C -0.143 4.143 29 H 0.133 0.867 30 C 0.141 3.859 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.274 0.726 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.546 8.253 2.227 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.424 3.576 7 O -0.481 6.481 8 N -0.362 5.362 9 C 0.039 3.961 10 C -0.146 4.146 11 H 0.166 0.834 12 C -0.182 4.182 13 H 0.114 0.886 14 C 0.274 3.726 15 O -0.495 6.495 16 N -0.168 5.168 17 C -0.469 4.469 18 H 0.105 0.895 19 C -0.198 4.198 20 N -0.532 5.532 21 Si 0.813 3.187 22 H -0.191 1.191 23 H -0.188 1.188 24 H -0.216 1.216 25 C 0.101 3.899 26 C -0.063 4.063 27 N -0.185 5.185 28 C -0.162 4.162 29 H 0.151 0.849 30 C 0.019 3.981 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.914 9.509 1.329 19.450 hybrid contribution 1.343 -1.051 -0.226 1.721 sum -15.571 8.458 1.103 17.754 Atomic orbital electron populations 1.22428 0.92978 1.03875 1.03809 1.22408 0.95192 0.92445 0.81087 1.21881 1.01892 0.90882 1.04617 1.22483 1.00736 1.02508 0.98105 1.86313 1.71697 1.23161 1.47241 1.17561 0.78588 0.80774 0.80688 1.90882 1.42933 1.71009 1.43292 1.48233 1.52574 1.13930 1.21498 1.21992 0.94981 0.77381 1.01733 1.23666 0.88753 0.99876 1.02303 0.83365 1.21925 0.93706 1.03591 0.98948 0.88643 1.19789 0.86740 0.81110 0.84977 1.90500 1.65941 1.67668 1.25346 1.43681 1.25645 1.40223 1.07216 1.19698 1.03789 1.28090 0.95316 0.89514 1.25985 0.98449 1.00477 0.94888 1.69949 1.40682 1.37590 1.04995 0.84932 0.76865 0.77983 0.78873 1.19083 1.18830 1.21566 1.18916 0.96687 0.91818 0.82469 1.29727 0.90711 0.93308 0.92546 1.80835 1.11401 1.14996 1.11242 1.23497 1.00863 0.93516 0.98343 0.84883 1.22512 0.90864 0.95226 0.89454 0.91404 0.89041 0.91740 0.92333 0.87779 0.90535 0.91835 0.88826 0.93729 0.89323 0.85861 0.91576 0.85975 0.85695 0.86073 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.37 71.98 0.60 -2.76 16 2 C 0.12 2.79 1.13 -10.79 -0.01 2.78 16 3 C -0.14 -2.21 8.85 71.98 0.64 -1.58 16 4 C -0.18 -4.51 8.37 71.98 0.60 -3.91 16 5 O -0.37 -10.06 9.47 -55.52 -0.53 -10.59 16 6 C 0.67 19.35 8.01 129.79 1.04 20.39 16 7 O -0.59 -19.16 12.15 19.82 0.24 -18.92 16 8 N -0.62 -15.22 2.95 -931.92 -2.75 -17.96 16 9 C 0.16 3.21 7.00 86.54 0.61 3.81 16 10 C -0.13 -3.05 6.88 -9.94 -0.07 -3.12 16 11 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 12 C -0.16 -5.46 4.16 -11.54 -0.05 -5.51 16 13 H 0.10 3.50 6.56 -2.39 -0.02 3.49 16 14 C 0.48 21.76 7.34 87.66 0.64 22.40 16 15 O -0.61 -31.50 16.00 -3.05 -0.05 -31.55 16 16 N -0.45 -21.11 2.60 -645.42 -1.68 -22.79 16 17 C -0.34 -17.78 9.27 84.04 0.78 -17.00 16 18 H 0.09 4.81 7.43 -2.91 -0.02 4.79 16 19 C 0.00 0.21 4.84 84.92 0.41 0.62 16 20 N -0.89 -45.62 9.58 21.66 0.21 -45.41 16 21 Si 0.99 39.98 29.60 68.60 2.03 42.01 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.23 9.24 4.80 84.57 0.41 9.64 16 26 C 0.25 11.73 12.66 89.45 1.13 12.86 16 27 N -0.50 -25.04 18.53 20.00 0.37 -24.67 16 28 C -0.14 -3.81 6.54 -9.95 -0.07 -3.87 16 29 H 0.13 3.75 7.80 -2.39 -0.02 3.73 16 30 C 0.14 3.00 7.10 86.06 0.61 3.61 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.91 5.88 -2.39 -0.01 1.90 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.09 1.90 7.88 -2.39 -0.02 1.88 16 41 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 43 H 0.12 5.00 6.63 -2.39 -0.02 4.99 16 44 H 0.13 3.99 7.00 -2.39 -0.02 3.97 16 45 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 1.98 8.00 -2.38 -0.02 1.96 16 Total: -1.00 -71.75 380.31 6.13 -65.62 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.00 Total: 25.86 kcal Atomic # 6 Polarization: 31.12 SS G_CDS: 7.28 Total: 38.39 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -3.84 Total: -110.83 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -0.33 Total: -61.05 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -71.75 6.13 -65.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.540 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds