Wall clock time and date at job start Tue Mar 31 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47414 * 240.00189 * 2 1 3 5 5 H 1.07996 * 119.99745 * 240.00440 * 4 2 1 6 6 C 1.37875 * 119.99981 * 59.99792 * 4 2 1 7 7 N 1.31513 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99799 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47261 * 59.99870 * 8 6 4 10 10 H 1.48500 * 109.46839 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47058 * 299.99813 * 8 6 4 12 12 C 1.53003 * 109.47106 * 119.99933 * 2 1 3 13 13 N 1.46499 * 109.47012 * 300.00018 * 12 2 1 14 14 C 1.34779 * 120.00045 * 179.97438 * 13 12 2 15 15 O 1.21349 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.49451 * 120.00242 * 179.97438 * 14 13 12 17 17 O 1.21354 * 119.99753 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00244 * 180.02562 * 16 14 13 19 19 C 1.46504 * 120.00362 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47265 * 180.02562 * 19 18 16 21 21 O 1.42894 * 109.47573 * 64.99666 * 20 19 18 22 22 C 1.35910 * 117.00621 * 180.02562 * 21 20 19 23 23 C 1.39138 * 120.47706 * 180.24394 * 22 21 20 24 24 C 1.38535 * 118.37336 * 180.24194 * 23 22 21 25 25 C 1.38262 * 119.22035 * 359.47237 * 24 23 22 26 26 N 1.31844 * 120.88422 * 0.30388 * 25 24 23 27 27 C 1.31834 * 121.78446 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47364 * 300.00438 * 1 2 3 29 29 H 1.09001 * 109.47271 * 60.00250 * 1 2 3 30 30 H 1.08995 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47049 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46854 * 300.00005 * 3 2 1 33 33 H 1.09002 * 109.46987 * 59.99849 * 3 2 1 34 34 H 0.97003 * 119.99520 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46720 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.46979 * 60.00122 * 12 2 1 37 37 H 0.97003 * 120.00066 * 359.97438 * 13 12 2 38 38 H 0.97003 * 119.99887 * 359.97438 * 18 16 14 39 39 H 1.08995 * 109.46618 * 59.99948 * 19 18 16 40 40 H 1.09000 * 109.46694 * 300.00129 * 19 18 16 41 41 H 1.09002 * 109.46851 * 304.99701 * 20 19 18 42 42 H 1.08998 * 109.47422 * 185.00363 * 20 19 18 43 43 H 1.07999 * 120.81005 * 0.02562 * 23 22 21 44 44 H 1.08002 * 120.39207 * 179.75678 * 24 23 22 45 45 H 1.08000 * 119.55595 * 180.28266 * 25 24 23 46 46 H 1.07997 * 119.66066 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8261 -0.4205 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5745 -1.4780 3.7809 16 6 1.3791 0.2135 4.8898 17 8 0.6818 1.2004 4.7784 18 7 1.7047 -0.2469 6.1139 19 6 1.2163 0.4437 7.3101 20 6 1.7268 -0.2771 8.5593 21 8 3.1509 -0.1759 8.6192 22 6 3.7678 -0.7681 9.6756 23 6 5.1516 -0.7096 9.8082 24 6 5.7354 -1.3328 10.8991 25 6 4.9295 -1.9778 11.8190 26 7 3.6204 -2.0106 11.6662 27 6 3.0264 -1.4351 10.6396 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7090 1.1614 -3.4844 35 1 3.1299 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 2.2617 -1.0360 6.2029 39 1 0.1264 0.4437 7.3100 40 1 1.5797 1.4714 7.3100 41 1 1.4388 -1.3275 8.5158 42 1 1.2922 0.1823 9.4470 43 1 5.7561 -0.1941 9.0766 44 1 6.8070 -1.3111 11.0320 45 1 5.3785 -2.4614 12.6739 46 1 1.9514 -1.4836 10.5482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817814403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:31 Heat of formation + Delta-G solvation = -74.543183 kcal Electronic energy + Delta-G solvation = -27763.827679 eV Core-core repulsion = 23654.141510 eV Total energy + Delta-G solvation = -4109.686169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09867 -40.41617 -38.85764 -38.25548 -36.50117 -35.30562 -33.33748 -32.82720 -31.07836 -30.90188 -29.87291 -26.46032 -25.73330 -25.37702 -24.81372 -23.80955 -23.28104 -22.13089 -20.30201 -19.04282 -18.89264 -18.34215 -17.23477 -17.08239 -16.95559 -16.32818 -15.85546 -15.79499 -15.27287 -14.99587 -14.90383 -14.58477 -14.47792 -14.05631 -13.88238 -13.52134 -13.41394 -13.22255 -12.94213 -12.68765 -12.55364 -12.29243 -12.22912 -11.82994 -11.48703 -11.40779 -11.18636 -10.87187 -10.74936 -10.40803 -10.21163 -10.18361 -9.91734 -9.66314 -9.57628 -9.44856 -9.25638 -8.94283 -8.82155 -8.61964 -8.37793 -6.03310 -4.14163 0.64480 0.83021 1.61249 2.44297 2.54420 3.29133 3.33848 3.34430 3.36871 3.43988 3.86794 3.98372 4.09498 4.25232 4.38213 4.45455 4.46539 4.58455 4.66027 4.78664 4.85617 5.06530 5.15866 5.23208 5.30634 5.49613 5.64916 5.99350 6.04339 6.09856 6.22212 6.45692 6.61292 6.69762 6.80597 6.83924 6.92480 6.99215 7.02482 7.32004 7.48611 7.54020 7.63275 7.68767 7.92897 7.99059 8.11242 8.30618 8.39678 8.85706 9.51630 10.98030 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.001814 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.602185 B =15435.272667 C =16091.122456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.705 5.705 19 C 0.122 3.878 20 C 0.042 3.958 21 O -0.305 6.305 22 C 0.082 3.918 23 C -0.107 4.107 24 C -0.131 4.131 25 C 0.058 3.942 26 N -0.451 5.451 27 C 0.015 3.985 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.415 0.585 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.158 0.842 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -1.277 26.316 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.275 3.725 15 O -0.413 6.413 16 C 0.290 3.710 17 O -0.395 6.395 18 N -0.360 5.360 19 C -0.001 4.001 20 C -0.033 4.033 21 O -0.217 6.217 22 C 0.034 3.966 23 C -0.134 4.134 24 C -0.151 4.151 25 C -0.100 4.100 26 N -0.161 5.161 27 C -0.143 4.143 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.252 0.748 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.175 0.825 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.200 -1.444 26.567 26.798 hybrid contribution 0.700 -0.094 -1.325 1.501 sum 3.900 -1.538 25.242 25.588 Atomic orbital electron populations 1.21850 0.97566 0.99277 1.00385 1.18391 0.93002 0.92888 0.90265 1.21855 0.98618 0.98231 1.00388 1.20901 1.31759 1.12189 0.89761 0.92411 1.24884 0.94836 0.94921 0.98872 1.69798 1.36418 1.22612 1.23406 0.86610 0.79205 0.79752 0.82140 1.20291 1.21322 1.20281 1.21951 0.98568 0.96039 0.82832 1.46226 1.50410 1.31360 1.05139 1.19916 0.82447 0.85248 0.84891 1.90731 1.37859 1.25962 1.86739 1.20493 0.80897 0.84630 0.84942 1.90763 1.36569 1.25315 1.86853 1.45672 1.53318 1.32437 1.04589 1.21485 0.99828 0.97335 0.81502 1.23213 0.78922 1.01978 0.99181 1.86156 1.21585 1.71653 1.42284 1.20065 0.93311 0.94627 0.88569 1.21029 0.91846 1.01047 0.99434 1.22067 1.01763 0.97117 0.94108 1.22696 0.89011 0.98783 0.99476 1.67525 1.12345 1.15672 1.20522 1.22942 1.00667 0.98867 0.91782 0.97277 0.89443 0.95349 0.95350 0.89427 0.97283 0.92879 0.91980 0.91974 0.75175 0.74805 0.88428 0.89611 0.90514 0.89569 0.83781 0.83933 0.82460 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 2 C 0.06 1.28 0.50 -155.65 -0.08 1.20 16 3 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.46 9.35 55.43 0.52 -22.94 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.68 -12.51 4.95 -60.73 -0.30 -12.81 16 14 C 0.50 8.58 7.89 -11.58 -0.09 8.49 16 15 O -0.53 -10.17 16.48 5.50 0.09 -10.08 16 16 C 0.51 7.52 7.89 -11.59 -0.09 7.43 16 17 O -0.52 -8.61 16.48 5.49 0.09 -8.52 16 18 N -0.70 -7.79 5.50 -60.73 -0.33 -8.12 16 19 C 0.12 0.95 6.06 -4.04 -0.02 0.93 16 20 C 0.04 0.24 4.88 37.15 0.18 0.42 16 21 O -0.30 -2.54 10.10 -19.46 -0.20 -2.74 16 22 C 0.08 0.68 6.71 -39.07 -0.26 0.42 16 23 C -0.11 -0.81 10.13 -39.14 -0.40 -1.20 16 24 C -0.13 -0.81 10.11 -39.46 -0.40 -1.20 16 25 C 0.06 0.41 11.18 -17.54 -0.20 0.22 16 26 N -0.45 -4.13 10.35 -13.13 -0.14 -4.27 16 27 C 0.02 0.12 10.22 -17.38 -0.18 -0.05 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.41 7.43 5.64 -40.82 -0.23 7.20 16 38 H 0.42 4.40 7.94 -40.82 -0.32 4.07 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.36 7.68 -51.93 -0.40 -0.04 16 42 H 0.09 0.31 7.68 -51.93 -0.40 -0.09 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.16 0.91 6.32 -52.49 -0.33 0.57 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -30.83 383.65 -7.20 -38.03 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.37 Total: 8.05 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.32 Total: 2.11 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.25 Total: -48.14 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.02 Total: -21.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.83 -7.20 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817814403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.517 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds