Wall clock time and date at job start Tue Mar 31 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47414 * 240.00189 * 2 1 3 5 5 H 1.07996 * 119.99745 * 240.00440 * 4 2 1 6 6 C 1.37875 * 119.99981 * 59.99792 * 4 2 1 7 7 N 1.31513 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99799 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47261 * 59.99870 * 8 6 4 10 10 H 1.48500 * 109.46839 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47058 * 299.99813 * 8 6 4 12 12 C 1.53003 * 109.47106 * 119.99933 * 2 1 3 13 13 N 1.46499 * 109.47012 * 300.00018 * 12 2 1 14 14 C 1.34779 * 120.00045 * 179.97438 * 13 12 2 15 15 O 1.21349 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.49451 * 120.00242 * 179.97438 * 14 13 12 17 17 O 1.21354 * 119.99753 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00244 * 180.02562 * 16 14 13 19 19 C 1.46504 * 120.00362 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47265 * 180.02562 * 19 18 16 21 21 O 1.42894 * 109.47573 * 64.99666 * 20 19 18 22 22 C 1.35910 * 117.00621 * 180.02562 * 21 20 19 23 23 C 1.39138 * 120.47706 * 180.24394 * 22 21 20 24 24 C 1.38535 * 118.37336 * 180.24194 * 23 22 21 25 25 C 1.38262 * 119.22035 * 359.47237 * 24 23 22 26 26 N 1.31844 * 120.88422 * 0.30388 * 25 24 23 27 27 C 1.31834 * 121.78446 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47364 * 300.00438 * 1 2 3 29 29 H 1.09001 * 109.47271 * 60.00250 * 1 2 3 30 30 H 1.08995 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47049 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46854 * 300.00005 * 3 2 1 33 33 H 1.09002 * 109.46987 * 59.99849 * 3 2 1 34 34 H 0.97003 * 119.99520 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46720 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.46979 * 60.00122 * 12 2 1 37 37 H 0.97003 * 120.00066 * 359.97438 * 13 12 2 38 38 H 0.97003 * 119.99887 * 359.97438 * 18 16 14 39 39 H 1.08995 * 109.46618 * 59.99948 * 19 18 16 40 40 H 1.09000 * 109.46694 * 300.00129 * 19 18 16 41 41 H 1.09002 * 109.46851 * 304.99701 * 20 19 18 42 42 H 1.08998 * 109.47422 * 185.00363 * 20 19 18 43 43 H 1.07999 * 120.81005 * 0.02562 * 23 22 21 44 44 H 1.08002 * 120.39207 * 179.75678 * 24 23 22 45 45 H 1.08000 * 119.55595 * 180.28266 * 25 24 23 46 46 H 1.07997 * 119.66066 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8261 -0.4205 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5745 -1.4780 3.7809 16 6 1.3791 0.2135 4.8898 17 8 0.6818 1.2004 4.7784 18 7 1.7047 -0.2469 6.1139 19 6 1.2163 0.4437 7.3101 20 6 1.7268 -0.2771 8.5593 21 8 3.1509 -0.1759 8.6192 22 6 3.7678 -0.7681 9.6756 23 6 5.1516 -0.7096 9.8082 24 6 5.7354 -1.3328 10.8991 25 6 4.9295 -1.9778 11.8190 26 7 3.6204 -2.0106 11.6662 27 6 3.0264 -1.4351 10.6396 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7090 1.1614 -3.4844 35 1 3.1299 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 2.2617 -1.0360 6.2029 39 1 0.1264 0.4437 7.3100 40 1 1.5797 1.4714 7.3100 41 1 1.4388 -1.3275 8.5158 42 1 1.2922 0.1823 9.4470 43 1 5.7561 -0.1941 9.0766 44 1 6.8070 -1.3111 11.0320 45 1 5.3785 -2.4614 12.6739 46 1 1.9514 -1.4836 10.5482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817814403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:30 Heat of formation + Delta-G solvation = -96.198772 kcal Electronic energy + Delta-G solvation = -27764.766736 eV Core-core repulsion = 23654.141510 eV Total energy + Delta-G solvation = -4110.625226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79851 -41.50419 -39.85680 -39.16329 -38.19629 -36.28699 -34.97988 -33.37760 -32.74508 -31.69097 -30.52161 -27.94522 -27.58652 -27.22183 -25.74751 -24.55602 -24.11528 -22.85912 -21.55736 -20.71663 -19.73793 -19.41193 -18.11853 -17.85430 -17.69718 -17.53229 -17.17326 -16.98209 -16.67848 -16.29334 -15.95087 -15.76577 -15.35086 -15.03359 -14.80753 -14.74620 -14.45568 -14.35559 -14.04460 -14.00696 -13.81972 -13.20944 -13.12514 -13.06821 -12.88614 -12.75134 -12.68369 -12.62001 -12.29915 -12.27235 -12.11937 -11.50630 -11.30571 -10.78488 -10.70273 -10.64330 -10.45987 -10.40837 -10.37386 -10.12596 -9.47378 -8.01020 -6.17451 0.14252 0.28683 0.33950 1.33577 1.46193 1.47594 1.54020 1.99335 2.14480 2.45625 2.70820 2.82136 3.22704 3.45442 3.50424 3.59138 3.74392 4.00347 4.01426 4.10717 4.27411 4.34335 4.36387 4.46974 4.61019 4.63643 4.67834 4.70661 4.92349 4.99595 5.04008 5.05774 5.08549 5.15978 5.17196 5.21646 5.47990 5.56598 5.64874 5.67720 5.90282 6.11458 6.18540 6.18979 6.36538 6.41485 6.71425 6.86228 6.95878 6.96383 7.50283 8.97966 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.001814 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.602185 B =15435.272667 C =16091.122456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.049 3.951 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.496 3.504 15 O -0.553 6.553 16 C 0.515 3.485 17 O -0.540 6.540 18 N -0.688 5.688 19 C 0.119 3.881 20 C 0.043 3.957 21 O -0.322 6.322 22 C 0.071 3.929 23 C -0.123 4.123 24 C -0.126 4.126 25 C 0.048 3.952 26 N -0.480 5.480 27 C 0.006 3.994 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.413 0.587 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.180 0.820 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 -1.550 28.055 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.277 3.723 15 O -0.432 6.432 16 C 0.295 3.705 17 O -0.417 6.417 18 N -0.342 5.342 19 C -0.004 4.004 20 C -0.032 4.032 21 O -0.235 6.235 22 C 0.023 3.977 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.109 4.109 26 N -0.190 5.190 27 C -0.152 4.152 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.256 0.744 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.168 0.832 44 H 0.188 0.812 45 H 0.197 0.803 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.459 -1.726 28.351 28.613 hybrid contribution 0.664 -0.026 -1.773 1.893 sum 4.123 -1.752 26.578 26.953 Atomic orbital electron populations 1.21691 0.97233 0.98897 1.00227 1.18404 0.93255 0.93038 0.90515 1.21700 0.98165 0.98000 1.00221 1.21198 1.31833 1.12280 0.91137 0.93078 1.25499 0.95157 0.95602 1.01144 1.69918 1.36936 1.23324 1.23681 0.85770 0.78620 0.78762 0.79361 1.20129 1.21118 1.20147 1.21545 0.97882 0.95513 0.83037 1.46072 1.50778 1.31437 1.05027 1.20385 0.81686 0.84904 0.85370 1.90719 1.38541 1.26801 1.87113 1.19926 0.81117 0.84341 0.85072 1.90763 1.37811 1.26101 1.87017 1.45718 1.52016 1.32072 1.04367 1.21758 1.00852 0.97030 0.80717 1.23344 0.78008 1.02848 0.98986 1.86118 1.22845 1.71932 1.42558 1.20187 0.93715 0.95061 0.88731 1.21326 0.92001 1.01487 1.00173 1.22374 1.03139 0.95872 0.93106 1.23165 0.88691 0.98735 1.00357 1.67544 1.13503 1.16638 1.21280 1.23207 1.01585 0.98794 0.91574 0.95095 0.91816 0.95769 0.95845 0.91776 0.95142 0.93050 0.92820 0.92698 0.74865 0.74408 0.86752 0.90020 0.89168 0.86874 0.83247 0.81161 0.80282 0.80802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 2 C 0.05 2.24 0.50 -52.92 -0.03 2.22 16 3 C -0.12 -5.58 8.08 71.98 0.58 -5.00 16 4 C -0.53 -27.28 8.01 25.60 0.21 -27.08 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.03 1.35 5.15 84.65 0.44 1.78 16 7 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 8 Si 0.95 42.16 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 C 0.14 5.92 4.50 86.38 0.39 6.31 16 13 N -0.68 -24.55 4.95 -464.41 -2.30 -26.84 16 14 C 0.50 16.72 7.89 87.27 0.69 17.41 16 15 O -0.55 -20.61 16.48 -3.24 -0.05 -20.66 16 16 C 0.52 14.51 7.89 87.27 0.69 15.19 16 17 O -0.54 -17.09 16.48 -3.26 -0.05 -17.14 16 18 N -0.69 -14.00 5.50 -464.42 -2.55 -16.55 16 19 C 0.12 1.59 6.06 86.38 0.52 2.11 16 20 C 0.04 0.39 4.88 71.98 0.35 0.74 16 21 O -0.32 -4.88 10.10 -92.53 -0.93 -5.81 16 22 C 0.07 1.08 6.71 22.60 0.15 1.24 16 23 C -0.12 -1.71 10.13 22.56 0.23 -1.48 16 24 C -0.13 -1.33 10.11 22.35 0.23 -1.10 16 25 C 0.05 0.61 11.18 84.70 0.95 1.55 16 26 N -0.48 -8.21 10.35 -195.44 -2.02 -10.24 16 27 C 0.01 0.09 10.22 84.81 0.87 0.95 16 28 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 29 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 30 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 33 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 34 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 14.49 5.64 -92.71 -0.52 13.96 16 38 H 0.42 8.17 7.94 -92.71 -0.74 7.44 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 0.61 7.68 -2.39 -0.02 0.59 16 42 H 0.11 0.47 7.68 -2.39 -0.02 0.45 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.18 1.68 6.32 -2.91 -0.02 1.66 16 Total: -1.00 -65.71 383.65 0.91 -64.79 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.24 Total: 26.27 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.84 Total: 9.89 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -6.68 Total: -101.52 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.04 Total: -43.62 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.71 0.91 -64.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817814403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.406 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds