Wall clock time and date at job start Tue Mar 31 2020 18:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99944 * 2 1 3 5 5 C 1.53002 * 109.47170 * 299.99855 * 4 2 1 6 6 C 1.50702 * 109.47192 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00063 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99844 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00320 * 3.00449 * 8 6 5 10 10 C 1.50700 * 109.47531 * 229.67096 * 9 8 6 11 11 H 1.07999 * 119.99385 * 243.46761 * 10 9 8 12 12 C 1.37875 * 119.99974 * 63.46309 * 10 9 8 13 13 N 1.31510 * 119.99848 * 186.21448 * 12 10 9 14 14 Si 1.86797 * 120.00045 * 6.22287 * 12 10 9 15 15 H 1.48495 * 109.47536 * 84.31108 * 14 12 10 16 16 H 1.48498 * 109.47183 * 204.31198 * 14 12 10 17 17 H 1.48504 * 109.47110 * 324.30860 * 14 12 10 18 18 C 1.46502 * 119.99962 * 183.01354 * 8 6 5 19 19 C 1.50702 * 109.46769 * 274.90353 * 18 8 6 20 20 C 1.38672 * 120.42160 * 274.77285 * 19 18 8 21 21 C 1.38623 * 118.42463 * 179.78324 * 20 19 18 22 22 C 1.38230 * 119.15666 * 0.51166 * 21 20 19 23 23 N 1.31852 * 120.76947 * 359.72942 * 22 21 20 24 24 C 1.31893 * 121.72004 * 359.97438 * 23 22 21 25 25 N 1.46499 * 109.47110 * 239.99967 * 2 1 3 26 26 O 1.21802 * 119.99742 * 240.00518 * 25 2 1 27 27 O 1.21794 * 120.00355 * 59.99812 * 25 2 1 28 28 H 1.08996 * 109.47075 * 300.00277 * 1 2 3 29 29 H 1.09004 * 109.47085 * 60.00037 * 1 2 3 30 30 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46819 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46771 * 299.99532 * 3 2 1 33 33 H 1.08996 * 109.47388 * 59.99914 * 3 2 1 34 34 H 1.08998 * 109.47069 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46951 * 60.00144 * 4 2 1 36 36 H 1.09004 * 109.46694 * 60.00397 * 5 4 2 37 37 H 1.08998 * 109.46812 * 300.00439 * 5 4 2 38 38 H 1.08996 * 109.46763 * 109.66531 * 9 8 6 39 39 H 1.09003 * 109.47043 * 349.67057 * 9 8 6 40 40 H 0.96999 * 120.00097 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.47114 * 34.90254 * 18 8 6 42 42 H 1.08998 * 109.47323 * 154.90429 * 18 8 6 43 43 H 1.08008 * 120.78362 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.41896 * 180.21977 * 21 20 19 45 45 H 1.08004 * 119.61832 * 179.74733 * 22 21 20 46 46 H 1.08000 * 119.61641 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0328 -0.7100 3.7290 7 8 2.7300 -1.6961 3.6178 8 7 1.7069 -0.2497 4.9530 9 6 0.8104 0.9011 5.0882 10 6 1.4240 1.9085 6.0261 11 1 0.9332 2.1474 6.9581 12 6 2.6118 2.5250 5.6946 13 7 3.2099 3.3104 6.5634 14 14 3.3714 2.2449 4.0111 15 1 2.7610 3.1786 3.0310 16 1 4.8346 2.4883 4.0816 17 1 3.1226 0.8450 3.5825 18 6 2.2492 -0.9001 6.1485 19 6 1.3803 -2.0743 6.5194 20 6 0.2506 -1.8921 7.3027 21 6 -0.5214 -3.0003 7.6152 22 6 -0.1362 -4.2429 7.1478 23 7 0.9474 -4.3795 6.4091 24 6 1.7022 -3.3468 6.0875 25 7 2.0184 -0.6906 -1.1962 26 8 2.7185 -1.6810 -1.0843 27 8 1.7241 -0.2746 -2.3024 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2492 36 1 0.4400 0.0000 2.4985 37 1 1.8933 1.0277 2.4984 38 1 -0.1483 0.5699 5.4872 39 1 0.6583 1.3599 4.1112 40 1 4.0454 3.7445 6.3300 41 1 3.2621 -1.2475 5.9453 42 1 2.2681 -0.1874 6.9730 43 1 -0.0234 -0.9095 7.6577 44 1 -1.4098 -2.8949 8.2201 45 1 -0.7299 -5.1119 7.3901 46 1 2.5829 -3.4977 5.4809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:29 Heat of formation + Delta-G solvation = 5.818120 kcal Electronic energy + Delta-G solvation = -30313.516765 eV Core-core repulsion = 26207.315324 eV Total energy + Delta-G solvation = -4106.201441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43318 -40.19614 -39.37103 -37.14070 -36.47731 -35.48615 -33.03891 -32.29438 -31.68029 -30.72814 -28.16861 -28.13836 -27.15895 -26.50431 -24.31761 -23.29520 -22.62615 -21.82157 -20.65696 -18.73197 -18.62802 -17.80710 -17.50129 -17.11202 -16.88881 -16.55994 -16.32138 -15.74459 -15.27155 -15.00303 -14.55216 -14.44349 -13.95316 -13.78257 -13.55915 -13.42093 -13.15693 -12.86520 -12.77381 -12.69835 -12.38417 -12.31861 -11.95610 -11.80221 -11.59441 -11.49655 -11.32704 -11.20748 -11.12545 -11.01542 -10.97447 -10.89328 -10.73322 -10.16805 -9.70935 -9.59079 -9.30551 -9.19874 -8.98057 -8.68936 -7.82794 -6.50629 -4.58240 0.59061 1.32490 1.52959 1.62880 2.68547 2.90911 3.12376 3.36293 3.57580 3.89259 3.96429 4.06115 4.12409 4.23956 4.68149 4.83145 4.86042 4.89430 5.00040 5.04789 5.06902 5.10485 5.16221 5.22422 5.24888 5.31455 5.37374 5.40294 5.51567 5.59366 5.71231 5.82732 5.95285 6.00930 6.11810 6.21488 6.32663 6.35515 6.46230 6.49867 6.67203 6.96610 7.01818 7.23542 7.64913 8.00616 8.19303 8.21948 8.54008 8.74277 9.11114 10.59111 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.004799 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.846100 B = 5833.445615 C = 7871.309363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 C -0.161 4.161 4 C -0.100 4.100 5 C -0.147 4.147 6 C 0.522 3.478 7 O -0.562 6.562 8 N -0.593 5.593 9 C 0.195 3.805 10 C -0.540 4.540 11 H 0.080 0.920 12 C 0.090 3.910 13 N -0.875 5.875 14 Si 0.847 3.153 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.229 1.229 18 C 0.163 3.837 19 C -0.139 4.139 20 C -0.060 4.060 21 C -0.182 4.182 22 C 0.085 3.915 23 N -0.493 5.493 24 C 0.117 3.883 25 N -0.012 5.012 26 O -0.156 6.156 27 O -0.171 6.171 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.270 0.730 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.148 0.852 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -4.963 -5.586 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 C -0.219 4.219 4 C -0.139 4.139 5 C -0.187 4.187 6 C 0.310 3.690 7 O -0.443 6.443 8 N -0.325 5.325 9 C 0.076 3.924 10 C -0.578 4.578 11 H 0.098 0.902 12 C -0.117 4.117 13 N -0.510 5.510 14 Si 0.675 3.325 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.154 1.154 18 C 0.039 3.961 19 C -0.143 4.143 20 C -0.087 4.087 21 C -0.201 4.201 22 C -0.072 4.072 23 N -0.202 5.202 24 C -0.040 4.040 25 N 0.510 4.490 26 O -0.378 6.378 27 O -0.389 6.389 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.165 0.835 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.744 -5.748 -5.247 10.299 hybrid contribution 0.324 0.987 -0.652 1.227 sum -6.420 -4.761 -5.899 9.934 Atomic orbital electron populations 1.22261 0.88674 1.04768 1.05727 1.23674 0.99084 0.96234 0.84745 1.22312 1.03025 0.90741 1.05806 1.21549 1.03501 0.99977 0.88825 1.22270 1.02531 1.01029 0.92824 1.19908 0.80389 0.83668 0.85009 1.90624 1.39628 1.27078 1.86968 1.49255 1.48111 1.31424 1.03710 1.19808 0.90344 0.84168 0.98044 1.21135 1.07972 1.21671 1.07001 0.90227 1.25039 0.96266 0.93684 0.96711 1.69900 1.17311 1.29247 1.34515 0.87803 0.79182 0.80324 0.85193 1.20121 1.21469 1.15390 1.20041 0.94736 0.91203 0.90100 1.21496 0.97636 0.97134 0.97992 1.21621 0.93037 0.99345 0.94658 1.22087 1.01375 0.94008 1.02672 1.22672 0.93621 0.96695 0.94202 1.67709 1.05505 1.34516 1.12429 1.22868 0.98088 0.87704 0.95372 1.45037 0.98976 1.00681 1.04305 1.94557 1.33819 1.15621 1.93773 1.94487 1.60989 1.69042 1.14335 0.87961 0.89690 0.90685 0.90702 0.89521 0.88030 0.88933 0.88832 0.88829 0.88560 0.94271 0.94242 0.92033 0.90642 0.87265 0.84521 0.85289 0.83477 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.22 37.16 0.31 -1.17 16 2 C 0.04 0.49 1.00 -131.82 -0.13 0.36 16 3 C -0.16 -1.77 8.22 37.16 0.31 -1.46 16 4 C -0.10 -1.41 2.83 -26.73 -0.08 -1.48 16 5 C -0.15 -2.14 2.79 -27.88 -0.08 -2.22 16 6 C 0.52 9.44 5.23 -10.99 -0.06 9.39 16 7 O -0.56 -11.41 14.87 5.56 0.08 -11.33 16 8 N -0.59 -10.83 1.71 -176.43 -0.30 -11.13 16 9 C 0.19 3.59 5.39 -5.19 -0.03 3.56 16 10 C -0.54 -12.29 8.42 -34.44 -0.29 -12.58 16 11 H 0.08 2.00 8.06 -52.49 -0.42 1.58 16 12 C 0.09 2.19 5.46 -17.82 -0.10 2.09 16 13 N -0.87 -23.38 13.96 55.43 0.77 -22.61 16 14 Si 0.85 17.70 24.37 -169.99 -4.14 13.56 16 15 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.23 -4.41 2.19 56.52 0.12 -4.29 16 18 C 0.16 2.93 5.32 -5.19 -0.03 2.90 16 19 C -0.14 -2.28 5.44 -104.48 -0.57 -2.85 16 20 C -0.06 -0.88 9.88 -39.28 -0.39 -1.27 16 21 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 22 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 23 N -0.49 -8.08 10.36 -13.25 -0.14 -8.22 16 24 C 0.12 1.97 10.52 -17.55 -0.18 1.79 16 25 N -0.01 -0.17 3.82 0.54 0.00 -0.17 16 26 O -0.16 -2.50 17.93 -29.46 -0.53 -3.03 16 27 O -0.17 -2.49 18.50 -29.46 -0.55 -3.03 16 28 H 0.10 0.81 6.43 -51.93 -0.33 0.48 16 29 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.10 1.07 6.43 -51.93 -0.33 0.73 16 34 H 0.09 1.45 8.02 -51.93 -0.42 1.03 16 35 H 0.09 1.38 8.02 -51.93 -0.42 0.96 16 36 H 0.09 1.13 6.15 -51.93 -0.32 0.81 16 37 H 0.10 1.44 2.41 -51.93 -0.13 1.31 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.67 5.11 -51.93 -0.27 0.41 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 1.40 7.54 -51.93 -0.39 1.01 16 42 H 0.11 2.09 6.82 -51.93 -0.35 1.74 16 43 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.16 2.73 7.58 -52.49 -0.40 2.33 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -28.82 367.48 -7.73 -36.55 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.56 Total: 8.57 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.91 Total: -4.70 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.34 Total: -42.13 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.99 Total: -17.39 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.14 Total: 13.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.82 -7.73 -36.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.372 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds