Wall clock time and date at job start Tue Mar 31 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99944 * 2 1 3 5 5 C 1.53002 * 109.47170 * 299.99855 * 4 2 1 6 6 C 1.50702 * 109.47192 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00063 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99844 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00320 * 3.00449 * 8 6 5 10 10 C 1.50700 * 109.47531 * 229.67096 * 9 8 6 11 11 H 1.07999 * 119.99385 * 243.46761 * 10 9 8 12 12 C 1.37875 * 119.99974 * 63.46309 * 10 9 8 13 13 N 1.31510 * 119.99848 * 186.21448 * 12 10 9 14 14 Si 1.86797 * 120.00045 * 6.22287 * 12 10 9 15 15 H 1.48495 * 109.47536 * 84.31108 * 14 12 10 16 16 H 1.48498 * 109.47183 * 204.31198 * 14 12 10 17 17 H 1.48504 * 109.47110 * 324.30860 * 14 12 10 18 18 C 1.46502 * 119.99962 * 183.01354 * 8 6 5 19 19 C 1.50702 * 109.46769 * 274.90353 * 18 8 6 20 20 C 1.38672 * 120.42160 * 274.77285 * 19 18 8 21 21 C 1.38623 * 118.42463 * 179.78324 * 20 19 18 22 22 C 1.38230 * 119.15666 * 0.51166 * 21 20 19 23 23 N 1.31852 * 120.76947 * 359.72942 * 22 21 20 24 24 C 1.31893 * 121.72004 * 359.97438 * 23 22 21 25 25 N 1.46499 * 109.47110 * 239.99967 * 2 1 3 26 26 O 1.21802 * 119.99742 * 240.00518 * 25 2 1 27 27 O 1.21794 * 120.00355 * 59.99812 * 25 2 1 28 28 H 1.08996 * 109.47075 * 300.00277 * 1 2 3 29 29 H 1.09004 * 109.47085 * 60.00037 * 1 2 3 30 30 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46819 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46771 * 299.99532 * 3 2 1 33 33 H 1.08996 * 109.47388 * 59.99914 * 3 2 1 34 34 H 1.08998 * 109.47069 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46951 * 60.00144 * 4 2 1 36 36 H 1.09004 * 109.46694 * 60.00397 * 5 4 2 37 37 H 1.08998 * 109.46812 * 300.00439 * 5 4 2 38 38 H 1.08996 * 109.46763 * 109.66531 * 9 8 6 39 39 H 1.09003 * 109.47043 * 349.67057 * 9 8 6 40 40 H 0.96999 * 120.00097 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.47114 * 34.90254 * 18 8 6 42 42 H 1.08998 * 109.47323 * 154.90429 * 18 8 6 43 43 H 1.08008 * 120.78362 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.41896 * 180.21977 * 21 20 19 45 45 H 1.08004 * 119.61832 * 179.74733 * 22 21 20 46 46 H 1.08000 * 119.61641 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0328 -0.7100 3.7290 7 8 2.7300 -1.6961 3.6178 8 7 1.7069 -0.2497 4.9530 9 6 0.8104 0.9011 5.0882 10 6 1.4240 1.9085 6.0261 11 1 0.9332 2.1474 6.9581 12 6 2.6118 2.5250 5.6946 13 7 3.2099 3.3104 6.5634 14 14 3.3714 2.2449 4.0111 15 1 2.7610 3.1786 3.0310 16 1 4.8346 2.4883 4.0816 17 1 3.1226 0.8450 3.5825 18 6 2.2492 -0.9001 6.1485 19 6 1.3803 -2.0743 6.5194 20 6 0.2506 -1.8921 7.3027 21 6 -0.5214 -3.0003 7.6152 22 6 -0.1362 -4.2429 7.1478 23 7 0.9474 -4.3795 6.4091 24 6 1.7022 -3.3468 6.0875 25 7 2.0184 -0.6906 -1.1962 26 8 2.7185 -1.6810 -1.0843 27 8 1.7241 -0.2746 -2.3024 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2492 36 1 0.4400 0.0000 2.4985 37 1 1.8933 1.0277 2.4984 38 1 -0.1483 0.5699 5.4872 39 1 0.6583 1.3599 4.1112 40 1 4.0454 3.7445 6.3300 41 1 3.2621 -1.2475 5.9453 42 1 2.2681 -0.1874 6.9730 43 1 -0.0234 -0.9095 7.6577 44 1 -1.4098 -2.8949 8.2201 45 1 -0.7299 -5.1119 7.3901 46 1 2.5829 -3.4977 5.4809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822809393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:28 Heat of formation + Delta-G solvation = -10.452720 kcal Electronic energy + Delta-G solvation = -30314.222322 eV Core-core repulsion = 26207.315324 eV Total energy + Delta-G solvation = -4106.906998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.50118 -41.51939 -40.64792 -38.21017 -37.58698 -37.01417 -34.66177 -33.74903 -32.83562 -31.90966 -29.80190 -28.90128 -28.16773 -27.80910 -25.55455 -24.55855 -24.19625 -23.03192 -21.76236 -20.12438 -19.73820 -18.98526 -18.70734 -18.53672 -18.15988 -17.88094 -17.58912 -16.97348 -16.76231 -16.24132 -16.04795 -15.40625 -15.18848 -15.12903 -14.83306 -14.46643 -14.31336 -14.06323 -13.95565 -13.89927 -13.64243 -13.28729 -13.19133 -12.88557 -12.80278 -12.74468 -12.62170 -12.47902 -12.41797 -12.36897 -12.32611 -12.17179 -12.04159 -11.77823 -11.33984 -10.90321 -10.81288 -10.62577 -10.41761 -9.91647 -9.33737 -8.38741 -6.48368 -0.56250 0.16208 0.36364 0.61580 1.06711 1.22543 1.39729 1.86995 2.20780 2.32799 2.82396 2.94686 3.08623 3.12414 3.25583 3.55632 3.69493 3.80536 3.84875 3.96756 4.00862 4.13040 4.15092 4.16281 4.28742 4.32612 4.39556 4.47375 4.53784 4.57201 4.69295 4.78325 4.80510 4.85675 4.87537 4.93044 4.97836 5.00957 5.23383 5.25639 5.35668 5.43899 5.60265 5.81940 6.20025 6.47473 6.59332 6.76662 7.04023 7.22504 7.30447 8.73861 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.004799 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.846100 B = 5833.445615 C = 7871.309363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.045 3.955 3 C -0.165 4.165 4 C -0.093 4.093 5 C -0.142 4.142 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.595 5.595 9 C 0.202 3.798 10 C -0.528 4.528 11 H 0.046 0.954 12 C 0.041 3.959 13 N -0.929 5.929 14 Si 0.894 3.106 15 H -0.244 1.244 16 H -0.319 1.319 17 H -0.210 1.210 18 C 0.169 3.831 19 C -0.149 4.149 20 C -0.065 4.065 21 C -0.165 4.165 22 C 0.085 3.915 23 N -0.515 5.515 24 C 0.103 3.897 25 N -0.008 5.008 26 O -0.211 6.211 27 O -0.149 6.149 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.142 0.858 44 H 0.169 0.831 45 H 0.184 0.816 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -5.133 -6.840 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.131 4.131 5 C -0.182 4.182 6 C 0.303 3.697 7 O -0.470 6.470 8 N -0.326 5.326 9 C 0.083 3.917 10 C -0.567 4.567 11 H 0.065 0.935 12 C -0.160 4.160 13 N -0.567 5.567 14 Si 0.720 3.280 15 H -0.168 1.168 16 H -0.247 1.247 17 H -0.135 1.135 18 C 0.045 3.955 19 C -0.152 4.152 20 C -0.092 4.092 21 C -0.185 4.185 22 C -0.072 4.072 23 N -0.224 5.224 24 C -0.054 4.054 25 N 0.511 4.489 26 O -0.421 6.421 27 O -0.377 6.377 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.160 0.840 44 H 0.186 0.814 45 H 0.201 0.799 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.970 -6.003 -6.464 13.313 hybrid contribution 1.219 1.005 -0.170 1.589 sum -8.751 -4.998 -6.635 12.065 Atomic orbital electron populations 1.22405 0.85989 1.05399 1.07652 1.23830 1.00854 0.96054 0.82581 1.22437 1.02583 0.89849 1.07409 1.21384 1.02095 0.99785 0.89864 1.22264 1.04703 1.00313 0.90873 1.20540 0.79911 0.83603 0.85679 1.90629 1.40667 1.28389 1.87303 1.49062 1.48125 1.31388 1.04069 1.19774 0.90452 0.83045 0.98446 1.21317 1.07225 1.21821 1.06294 0.93549 1.25729 0.96987 0.93614 0.99712 1.70047 1.18077 1.31848 1.36757 0.87143 0.76686 0.81836 0.82287 1.16806 1.24708 1.13455 1.19869 0.94661 0.91525 0.89448 1.21256 0.98442 0.96068 0.99453 1.21771 0.92627 1.00510 0.94272 1.22463 1.01746 0.92714 1.01549 1.23328 0.92682 0.98460 0.92719 1.67703 1.06696 1.34403 1.13600 1.22612 0.98270 0.88246 0.96257 1.45420 0.98357 1.00346 1.04810 1.94582 1.36100 1.17377 1.94001 1.94455 1.59778 1.68310 1.15139 0.85681 0.88113 0.90755 0.91704 0.87586 0.86744 0.91274 0.89928 0.85197 0.88230 0.92364 0.91486 0.92637 0.92257 0.89097 0.83982 0.81380 0.79910 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.22 71.98 0.59 -1.70 16 2 C 0.04 0.95 1.00 3.60 0.00 0.96 16 3 C -0.17 -3.04 8.22 71.98 0.59 -2.45 16 4 C -0.09 -2.46 2.83 30.60 0.09 -2.37 16 5 C -0.14 -3.71 2.79 29.85 0.08 -3.62 16 6 C 0.51 17.89 5.23 87.66 0.46 18.35 16 7 O -0.59 -24.00 14.87 -3.03 -0.05 -24.05 16 8 N -0.59 -21.10 1.71 -830.50 -1.42 -22.52 16 9 C 0.20 6.97 5.39 85.63 0.46 7.43 16 10 C -0.53 -23.97 8.42 25.60 0.22 -23.75 16 11 H 0.05 2.38 8.06 -2.91 -0.02 2.35 16 12 C 0.04 2.02 5.46 84.65 0.46 2.48 16 13 N -0.93 -51.41 13.96 21.45 0.30 -51.11 16 14 Si 0.89 36.16 24.37 68.60 1.67 37.83 16 15 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 16 H -0.32 -14.58 7.11 99.48 0.71 -13.87 16 17 H -0.21 -7.77 2.19 99.48 0.22 -7.55 16 18 C 0.17 6.20 5.32 85.63 0.46 6.65 16 19 C -0.15 -4.85 5.44 -19.77 -0.11 -4.96 16 20 C -0.07 -1.79 9.88 22.47 0.22 -1.56 16 21 C -0.17 -3.63 10.11 22.36 0.23 -3.40 16 22 C 0.09 2.05 11.18 84.69 0.95 3.00 16 23 N -0.51 -16.31 10.36 -195.83 -2.03 -18.34 16 24 C 0.10 3.49 10.52 84.67 0.89 4.38 16 25 N -0.01 -0.23 3.82 -152.21 -0.58 -0.81 16 26 O -0.21 -6.81 17.93 18.88 0.34 -6.48 16 27 O -0.15 -3.99 18.50 18.89 0.35 -3.64 16 28 H 0.12 1.27 6.43 -2.39 -0.02 1.26 16 29 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.56 8.03 -2.38 -0.02 1.54 16 33 H 0.11 1.84 6.43 -2.39 -0.02 1.83 16 34 H 0.07 2.15 8.02 -2.39 -0.02 2.13 16 35 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 36 H 0.13 2.48 6.15 -2.38 -0.01 2.47 16 37 H 0.10 2.58 2.41 -2.39 -0.01 2.57 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.99 5.11 -2.39 -0.01 1.98 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.06 2.32 7.54 -2.39 -0.02 2.31 16 42 H 0.09 3.62 6.82 -2.39 -0.02 3.61 16 43 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 44 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.14 5.09 7.58 -2.91 -0.02 5.07 16 Total: -1.00 -66.40 367.48 4.68 -61.72 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.51 Total: 27.94 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.59 Total: -0.56 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.73 Total: -92.77 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: 0.64 Total: -34.16 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 1.67 Total: 37.83 kcal Total: -66.40 4.68 -61.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.269 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds