Wall clock time and date at job start Tue Mar 31 2020 18:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35805 * 126.05702 * 2 1 4 4 C 1.35755 * 107.56439 * 179.97438 * 3 2 1 5 5 N 1.40764 * 126.07647 * 179.97438 * 4 3 2 6 6 C 1.46768 * 124.34330 * 179.72314 * 5 4 3 7 7 C 1.54302 * 105.56442 * 196.88860 * 6 5 4 8 8 H 1.08997 * 110.74357 * 93.00111 * 7 6 5 9 9 C 1.50701 * 111.12145 * 216.71259 * 7 6 5 10 10 O 1.20825 * 119.99735 * 354.01869 * 9 7 6 11 11 O 1.34226 * 120.00086 * 174.01252 * 9 7 6 12 12 C 1.45198 * 116.99964 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47235 * 300.00261 * 13 12 11 15 15 C 1.52999 * 109.47107 * 60.00185 * 13 12 11 16 16 C 1.50696 * 109.47406 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99971 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00675 * 180.02562 * 16 13 12 19 19 N 1.31524 * 119.99586 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00497 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.46677 * 89.99900 * 20 18 16 22 22 H 1.48500 * 109.47236 * 209.99533 * 20 18 16 23 23 H 1.48496 * 109.47228 * 330.00198 * 20 18 16 24 24 C 1.54631 * 101.84153 * 334.94176 * 7 6 5 25 25 C 1.34410 * 124.35529 * 0.03322 * 5 4 3 26 26 O 1.21307 * 124.94398 * 359.60775 * 25 5 4 27 27 C 1.40248 * 107.83771 * 0.02562 * 4 3 2 28 28 N 1.30831 * 108.33641 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.46947 * 89.99784 * 1 2 3 30 30 H 1.08990 * 109.47283 * 210.00155 * 1 2 3 31 31 H 1.09004 * 109.46749 * 330.00724 * 1 2 3 32 32 H 1.08006 * 126.21461 * 0.25807 * 3 2 1 33 33 H 1.08995 * 110.24892 * 316.02625 * 6 5 4 34 34 H 1.09005 * 110.24119 * 78.02330 * 6 5 4 35 35 H 1.09002 * 109.47211 * 300.00426 * 12 11 9 36 36 H 1.09000 * 109.46980 * 60.00434 * 12 11 9 37 37 H 1.09000 * 109.46927 * 59.99629 * 14 13 12 38 38 H 1.08996 * 109.47125 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47124 * 299.99870 * 14 13 12 40 40 H 1.09002 * 109.47043 * 59.99918 * 15 13 12 41 41 H 1.09006 * 109.47206 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47090 * 299.99795 * 15 13 12 43 43 H 0.96996 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.48649 * 265.89637 * 24 7 6 45 45 H 1.09006 * 110.59589 * 143.31828 * 24 7 6 46 46 H 1.07997 * 125.83179 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2644 1.0979 0.0000 4 6 3.5519 0.6673 0.0006 5 7 4.6988 1.4833 0.0003 6 6 6.0760 0.9759 0.0068 7 6 6.9549 2.1694 0.4357 8 1 7.1131 2.1644 1.5142 9 6 8.2700 2.1676 -0.3003 10 8 8.5565 1.2426 -1.0228 11 8 9.1228 3.1936 -0.1532 12 6 10.3709 3.1245 -0.8920 13 6 11.2064 4.3723 -0.5997 14 6 10.4287 5.6186 -1.0277 15 6 11.5045 4.4469 0.8991 16 6 12.5014 4.3009 -1.3669 17 1 12.7078 3.4506 -2.0001 18 6 13.4230 5.3209 -1.2607 19 7 13.1715 6.3566 -0.4900 20 14 15.0286 5.2320 -2.2111 21 1 14.8513 5.8654 -3.5426 22 1 16.0894 5.9492 -1.4591 23 1 15.4214 3.8108 -2.3875 24 6 6.0840 3.3741 0.0099 25 6 4.6736 2.8272 0.0000 26 8 3.6664 3.5032 -0.0069 27 6 3.5358 -0.7351 0.0003 28 7 2.2893 -1.1325 0.0002 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.9355 2.1267 0.0039 33 1 6.1734 0.1583 0.7209 34 1 6.3595 0.6418 -0.9913 35 1 10.9250 2.2368 -0.5868 36 1 10.1585 3.0709 -1.9598 37 1 9.4918 5.6705 -0.4731 38 1 11.0238 6.5076 -0.8190 39 1 10.2164 5.5655 -2.0955 40 1 12.0585 3.5591 1.2040 41 1 12.0994 5.3363 1.1075 42 1 10.5676 4.4989 1.4537 43 1 13.8200 7.0740 -0.4149 44 1 6.3674 3.7168 -0.9853 45 1 6.1734 4.1861 0.7316 46 1 4.4041 -1.3773 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860658712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:56 Heat of formation + Delta-G solvation = -35.766929 kcal Electronic energy + Delta-G solvation = -28703.334352 eV Core-core repulsion = 24595.329647 eV Total energy + Delta-G solvation = -4108.004704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82137 -40.74861 -39.66096 -37.07506 -36.34768 -34.94764 -33.98683 -32.65905 -31.29767 -29.54468 -28.17911 -26.87950 -26.01253 -25.66625 -25.23039 -23.79484 -22.33330 -21.19644 -20.16784 -19.64252 -18.92265 -18.06648 -17.69371 -16.65863 -16.37913 -15.95455 -15.84499 -15.66949 -15.30008 -15.13476 -14.74840 -14.60283 -14.05076 -13.90816 -13.72496 -13.34033 -13.18159 -12.99859 -12.86569 -12.80937 -12.79076 -11.97639 -11.90929 -11.61115 -11.51965 -11.23024 -11.20369 -11.01156 -10.74749 -10.52439 -10.46425 -10.45079 -10.20523 -10.01416 -9.96965 -9.74895 -9.47818 -9.37935 -8.80772 -8.41347 -7.93647 -6.05840 -4.17644 1.47682 1.97958 1.99557 2.34410 2.62635 2.81151 3.01338 3.25413 3.32704 3.36187 3.91014 3.99706 4.27282 4.34785 4.51116 4.62374 4.68407 4.76877 4.80255 5.02571 5.11236 5.14473 5.20756 5.24150 5.30561 5.34526 5.56868 5.60457 5.81878 5.98149 6.02156 6.39594 6.43412 6.63546 6.67281 6.76943 6.93103 6.94188 7.08375 7.08846 7.31474 7.34675 7.57413 7.66354 7.83583 8.00756 8.00939 8.14631 8.34315 8.82188 9.48180 10.95267 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002086 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.384446 B =13421.667802 C =13857.673830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.375 5.375 3 C 0.040 3.960 4 C 0.009 3.991 5 N -0.535 5.535 6 C 0.115 3.885 7 C -0.097 4.097 8 H 0.131 0.869 9 C 0.467 3.533 10 O -0.512 6.512 11 O -0.341 6.341 12 C 0.084 3.916 13 C 0.070 3.930 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.137 4.137 25 C 0.519 3.481 26 O -0.522 6.522 27 C 0.040 3.960 28 N -0.281 5.281 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.875 -9.855 3.824 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.107 4.107 4 C -0.093 4.093 5 N -0.261 5.261 6 C -0.007 4.007 7 C -0.117 4.117 8 H 0.149 0.851 9 C 0.309 3.691 10 O -0.401 6.401 11 O -0.256 6.256 12 C 0.011 3.989 13 C 0.069 3.931 14 C -0.188 4.188 15 C -0.187 4.187 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.134 4.134 19 N -0.519 5.519 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.177 4.177 25 C 0.308 3.692 26 O -0.398 6.398 27 C -0.148 4.148 28 N -0.103 5.103 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.141 0.859 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.150 -10.570 3.651 24.813 hybrid contribution 1.661 0.516 -0.639 1.853 sum -20.490 -10.055 3.012 23.022 Atomic orbital electron populations 1.21861 0.73438 1.04604 1.03528 1.48343 1.06625 1.03246 1.57844 1.22470 0.89486 0.93982 1.04796 1.17524 0.85899 0.90185 1.15713 1.45187 1.04724 1.05811 1.70418 1.22072 0.78011 0.95834 1.04782 1.21803 0.90637 0.96370 1.02856 0.85077 1.22780 0.85769 0.80866 0.79680 1.90657 1.76442 1.36032 1.36978 1.86521 1.30459 1.43094 1.65555 1.23761 0.78972 1.02109 0.94019 1.18261 0.91985 0.88395 0.94429 1.21779 0.97362 1.02109 0.97523 1.21774 0.98516 1.02158 0.96301 1.20915 1.00934 1.05857 1.27364 0.92502 1.24860 0.98198 0.95156 0.95163 1.69826 1.35394 1.08836 1.37862 0.86539 0.83061 0.78207 0.79871 1.20642 1.21150 1.19910 1.22276 0.90602 0.98230 1.06573 1.20905 0.91618 0.81324 0.75379 1.90671 1.37023 1.62109 1.49958 1.23689 0.95854 0.92590 1.02654 1.77297 1.00813 1.08718 1.23448 0.90632 0.89165 0.89269 0.79339 0.88682 0.88274 0.92297 0.92331 0.96381 0.89719 0.95816 0.95811 0.89719 0.96404 0.92864 0.86560 0.85867 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.55 11.48 59.85 0.69 1.24 16 2 N -0.38 -3.64 4.04 -67.82 -0.27 -3.92 16 3 C 0.04 0.43 10.69 -16.68 -0.18 0.25 16 4 C 0.01 0.10 6.80 -83.89 -0.57 -0.47 16 5 N -0.53 -5.82 3.16 -112.59 -0.36 -6.17 16 6 C 0.12 1.08 6.25 -3.21 -0.02 1.06 16 7 C -0.10 -0.99 3.64 -90.23 -0.33 -1.32 16 8 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 9 C 0.47 6.84 7.18 36.01 0.26 7.10 16 10 O -0.51 -8.67 15.32 -18.75 -0.29 -8.96 16 11 O -0.34 -5.95 8.86 -39.25 -0.35 -6.30 16 12 C 0.08 1.71 4.26 37.16 0.16 1.87 16 13 C 0.07 1.62 0.58 -155.66 -0.09 1.53 16 14 C -0.13 -2.97 8.11 37.16 0.30 -2.67 16 15 C -0.13 -2.96 8.11 37.16 0.30 -2.66 16 16 C -0.51 -13.19 8.01 -34.44 -0.28 -13.47 16 17 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 19 N -0.88 -23.29 9.36 55.43 0.52 -22.77 16 20 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.14 -1.42 6.40 -26.74 -0.17 -1.59 16 25 C 0.52 6.25 7.98 -10.87 -0.09 6.17 16 26 O -0.52 -7.59 15.64 5.53 0.09 -7.50 16 27 C 0.04 0.41 11.53 -17.22 -0.20 0.21 16 28 N -0.28 -3.14 12.56 30.70 0.39 -2.75 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.19 2.00 6.51 -52.48 -0.34 1.66 16 33 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.10 1.03 7.05 -51.93 -0.37 0.66 16 35 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 36 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 37 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 38 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 42 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 43 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.12 1.25 7.89 -51.93 -0.41 0.84 16 45 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.19 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -31.55 380.42 -6.60 -38.16 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.74 Total: 0.23 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.30 Total: -1.08 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.27 Total: -35.61 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.55 Total: -22.76 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.55 -6.60 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860658712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.391 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds