Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35805 * 126.05702 * 2 1 4 4 C 1.35755 * 107.56439 * 179.97438 * 3 2 1 5 5 N 1.40764 * 126.07647 * 179.97438 * 4 3 2 6 6 C 1.46768 * 124.34330 * 179.72314 * 5 4 3 7 7 C 1.54302 * 105.56442 * 196.88860 * 6 5 4 8 8 H 1.08997 * 110.74357 * 93.00111 * 7 6 5 9 9 C 1.50701 * 111.12145 * 216.71259 * 7 6 5 10 10 O 1.20825 * 119.99735 * 354.01869 * 9 7 6 11 11 O 1.34226 * 120.00086 * 174.01252 * 9 7 6 12 12 C 1.45198 * 116.99964 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47235 * 300.00261 * 13 12 11 15 15 C 1.52999 * 109.47107 * 60.00185 * 13 12 11 16 16 C 1.50696 * 109.47406 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99971 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00675 * 180.02562 * 16 13 12 19 19 N 1.31524 * 119.99586 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00497 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.46677 * 89.99900 * 20 18 16 22 22 H 1.48500 * 109.47236 * 209.99533 * 20 18 16 23 23 H 1.48496 * 109.47228 * 330.00198 * 20 18 16 24 24 C 1.54631 * 101.84153 * 334.94176 * 7 6 5 25 25 C 1.34410 * 124.35529 * 0.03322 * 5 4 3 26 26 O 1.21307 * 124.94398 * 359.60775 * 25 5 4 27 27 C 1.40248 * 107.83771 * 0.02562 * 4 3 2 28 28 N 1.30831 * 108.33641 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.46947 * 89.99784 * 1 2 3 30 30 H 1.08990 * 109.47283 * 210.00155 * 1 2 3 31 31 H 1.09004 * 109.46749 * 330.00724 * 1 2 3 32 32 H 1.08006 * 126.21461 * 0.25807 * 3 2 1 33 33 H 1.08995 * 110.24892 * 316.02625 * 6 5 4 34 34 H 1.09005 * 110.24119 * 78.02330 * 6 5 4 35 35 H 1.09002 * 109.47211 * 300.00426 * 12 11 9 36 36 H 1.09000 * 109.46980 * 60.00434 * 12 11 9 37 37 H 1.09000 * 109.46927 * 59.99629 * 14 13 12 38 38 H 1.08996 * 109.47125 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47124 * 299.99870 * 14 13 12 40 40 H 1.09002 * 109.47043 * 59.99918 * 15 13 12 41 41 H 1.09006 * 109.47206 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47090 * 299.99795 * 15 13 12 43 43 H 0.96996 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.48649 * 265.89637 * 24 7 6 45 45 H 1.09006 * 110.59589 * 143.31828 * 24 7 6 46 46 H 1.07997 * 125.83179 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2644 1.0979 0.0000 4 6 3.5519 0.6673 0.0006 5 7 4.6988 1.4833 0.0003 6 6 6.0760 0.9759 0.0068 7 6 6.9549 2.1694 0.4357 8 1 7.1131 2.1644 1.5142 9 6 8.2700 2.1676 -0.3003 10 8 8.5565 1.2426 -1.0228 11 8 9.1228 3.1936 -0.1532 12 6 10.3709 3.1245 -0.8920 13 6 11.2064 4.3723 -0.5997 14 6 10.4287 5.6186 -1.0277 15 6 11.5045 4.4469 0.8991 16 6 12.5014 4.3009 -1.3669 17 1 12.7078 3.4506 -2.0001 18 6 13.4230 5.3209 -1.2607 19 7 13.1715 6.3566 -0.4900 20 14 15.0286 5.2320 -2.2111 21 1 14.8513 5.8654 -3.5426 22 1 16.0894 5.9492 -1.4591 23 1 15.4214 3.8108 -2.3875 24 6 6.0840 3.3741 0.0099 25 6 4.6736 2.8272 0.0000 26 8 3.6664 3.5032 -0.0069 27 6 3.5358 -0.7351 0.0003 28 7 2.2893 -1.1325 0.0002 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.9355 2.1267 0.0039 33 1 6.1734 0.1583 0.7209 34 1 6.3595 0.6418 -0.9913 35 1 10.9250 2.2368 -0.5868 36 1 10.1585 3.0709 -1.9598 37 1 9.4918 5.6705 -0.4731 38 1 11.0238 6.5076 -0.8190 39 1 10.2164 5.5655 -2.0955 40 1 12.0585 3.5591 1.2040 41 1 12.0994 5.3363 1.1075 42 1 10.5676 4.4989 1.4537 43 1 13.8200 7.0740 -0.4149 44 1 6.3674 3.7168 -0.9853 45 1 6.1734 4.1861 0.7316 46 1 4.4041 -1.3773 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860658712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = -53.228822 kcal Electronic energy + Delta-G solvation = -28704.091556 eV Core-core repulsion = 24595.329647 eV Total energy + Delta-G solvation = -4108.761909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63942 -41.75835 -40.76160 -38.43401 -37.48402 -36.57139 -34.73637 -33.46655 -33.14524 -30.33386 -29.04606 -27.71615 -27.50442 -27.37853 -27.07085 -24.90533 -23.11933 -22.10213 -21.18575 -20.66985 -20.48090 -19.05843 -18.61286 -17.88699 -17.66810 -17.37806 -17.04027 -16.76059 -16.45361 -16.14496 -15.91261 -15.47442 -15.11111 -14.95776 -14.75168 -14.57479 -14.43577 -14.15869 -13.93972 -13.59314 -13.52731 -13.36762 -13.25593 -13.10843 -12.81513 -12.68967 -12.59021 -12.48352 -12.28198 -12.11169 -11.98607 -11.66596 -11.62753 -11.32440 -11.21647 -11.17138 -10.96971 -10.68113 -10.47420 -10.36521 -8.74077 -8.01457 -6.18833 0.69162 1.13471 1.17618 1.28172 1.44569 1.47102 1.54727 1.68068 1.98231 2.04314 2.47189 3.04827 3.18070 3.22205 3.58254 3.70717 3.78010 3.89432 4.09719 4.21967 4.33242 4.34729 4.38712 4.42790 4.47793 4.57165 4.65010 4.68602 4.68816 4.78487 4.82473 4.92022 5.08583 5.11854 5.25347 5.29873 5.43000 5.63397 5.68142 5.70202 5.71083 5.86305 5.99817 6.14790 6.23829 6.41695 6.56171 6.74741 6.87448 6.95158 7.49060 8.97597 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002086 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.384446 B =13421.667802 C =13857.673830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.374 5.374 3 C 0.034 3.966 4 C -0.013 4.013 5 N -0.530 5.530 6 C 0.117 3.883 7 C -0.083 4.083 8 H 0.164 0.836 9 C 0.470 3.530 10 O -0.534 6.534 11 O -0.345 6.345 12 C 0.097 3.903 13 C 0.059 3.941 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.530 4.530 17 H 0.050 0.950 18 C 0.027 3.973 19 N -0.898 5.898 20 Si 0.949 3.051 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.132 4.132 25 C 0.515 3.485 26 O -0.553 6.553 27 C 0.041 3.959 28 N -0.304 5.304 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.188 0.812 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.725 -10.788 4.442 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.160 5.160 3 C -0.114 4.114 4 C -0.115 4.115 5 N -0.256 5.256 6 C -0.004 4.004 7 C -0.102 4.102 8 H 0.181 0.819 9 C 0.313 3.687 10 O -0.424 6.424 11 O -0.260 6.260 12 C 0.024 3.976 13 C 0.059 3.941 14 C -0.178 4.178 15 C -0.177 4.177 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.173 4.173 19 N -0.537 5.537 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.172 4.172 25 C 0.304 3.696 26 O -0.431 6.431 27 C -0.146 4.146 28 N -0.127 5.127 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.205 0.795 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.156 0.844 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -23.021 -11.538 4.269 26.102 hybrid contribution 1.812 0.762 -0.845 2.139 sum -21.210 -10.776 3.424 24.035 Atomic orbital electron populations 1.22225 0.71227 1.06124 1.04785 1.48721 1.07910 1.02507 1.56832 1.22562 0.89923 0.94265 1.04635 1.17769 0.86098 0.90779 1.16841 1.45215 1.05214 1.05503 1.69633 1.22159 0.76975 0.96139 1.05164 1.21851 0.87797 0.96643 1.03888 0.81871 1.23532 0.86326 0.79598 0.79237 1.90657 1.77047 1.36709 1.38017 1.86499 1.29764 1.44491 1.65294 1.23258 0.80150 1.00356 0.93851 1.18277 0.91762 0.89756 0.94324 1.21631 0.97736 1.00883 0.97503 1.21621 0.98982 1.00745 0.96347 1.21212 1.02367 1.05648 1.27636 0.93222 1.25488 1.00755 0.95063 0.96008 1.69943 1.36033 1.09116 1.38563 0.85705 0.80021 0.78055 0.78704 1.20520 1.20921 1.19759 1.22275 0.89484 0.98649 1.06832 1.21143 0.91774 0.81625 0.75043 1.90653 1.38045 1.62847 1.51585 1.24054 0.96336 0.92432 1.01767 1.77257 1.01484 1.09632 1.24297 0.89479 0.88185 0.87285 0.79540 0.85840 0.89220 0.92814 0.93066 0.94384 0.92161 0.96235 0.96051 0.92177 0.94398 0.92971 0.87046 0.84392 0.77189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.48 127.77 1.47 2.31 16 2 N -0.37 -6.81 4.04 -368.47 -1.49 -8.30 16 3 C 0.03 0.70 10.69 83.50 0.89 1.60 16 4 C -0.01 -0.26 6.80 37.62 0.26 -0.01 16 5 N -0.53 -10.60 3.16 -628.70 -1.99 -12.59 16 6 C 0.12 1.91 6.25 86.77 0.54 2.45 16 7 C -0.08 -1.45 3.64 -10.54 -0.04 -1.48 16 8 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 9 C 0.47 12.78 7.18 71.24 0.51 13.29 16 10 O -0.53 -17.33 15.32 21.97 0.34 -16.99 16 11 O -0.35 -11.40 8.86 -51.38 -0.46 -11.86 16 12 C 0.10 3.89 4.26 71.98 0.31 4.20 16 13 C 0.06 2.72 0.58 -52.93 -0.03 2.69 16 14 C -0.12 -5.42 8.11 71.98 0.58 -4.84 16 15 C -0.12 -5.36 8.11 71.98 0.58 -4.77 16 16 C -0.53 -27.35 8.01 25.60 0.21 -27.14 16 17 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 18 C 0.03 1.40 5.15 84.65 0.44 1.83 16 19 N -0.90 -47.71 9.36 21.45 0.20 -47.51 16 20 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C -0.13 -2.47 6.40 30.59 0.20 -2.28 16 25 C 0.51 11.70 7.98 87.90 0.70 12.40 16 26 O -0.55 -15.76 15.64 -3.11 -0.05 -15.81 16 27 C 0.04 0.77 11.53 85.33 0.98 1.75 16 28 N -0.30 -6.40 12.56 -56.78 -0.71 -7.11 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.19 3.89 6.51 -2.91 -0.02 3.88 16 33 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 34 H 0.09 1.69 7.05 -2.38 -0.02 1.67 16 35 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 36 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 37 H 0.04 1.51 7.68 -2.39 -0.02 1.50 16 38 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.06 3.00 6.07 -2.38 -0.01 2.99 16 42 H 0.04 1.50 7.68 -2.39 -0.02 1.48 16 43 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 44 H 0.11 2.23 7.89 -2.39 -0.02 2.21 16 45 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -67.57 380.42 6.46 -61.11 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.99 Total: 13.30 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 7.60 Total: 2.01 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -3.99 Total: -75.51 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.17 Total: -44.66 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -67.57 6.46 -61.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860658712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.882 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds