Wall clock time and date at job start Tue Mar 31 2020 19:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00521 * 2 1 4 4 O 1.20824 * 119.99518 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00392 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47116 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47037 * 180.02562 * 6 5 3 8 8 C 1.36915 * 120.00232 * 97.57518 * 7 6 5 9 9 H 1.07992 * 119.99870 * 228.70917 * 8 7 6 10 10 C 1.39017 * 119.99963 * 48.97629 * 8 7 6 11 11 N 1.31379 * 120.00091 * 190.72121 * 10 8 7 12 12 Si 1.86802 * 119.99925 * 10.71927 * 10 8 7 13 13 H 1.48503 * 109.47137 * 53.80199 * 12 10 8 14 14 H 1.48496 * 109.47043 * 173.80444 * 12 10 8 15 15 H 1.48497 * 109.47076 * 293.80536 * 12 10 8 16 16 C 1.34783 * 119.99942 * 277.57023 * 7 6 5 17 17 O 1.21624 * 120.00013 * 3.16881 * 16 7 6 18 18 C 1.47438 * 119.99536 * 183.16661 * 16 7 6 19 19 C 1.40412 * 120.47892 * 206.67215 * 18 16 7 20 20 C 1.36844 * 118.48553 * 179.97438 * 19 18 16 21 21 C 1.39405 * 119.38731 * 359.97438 * 20 19 18 22 22 N 1.38471 * 119.53122 * 179.97438 * 21 20 19 23 23 C 1.46494 * 119.99883 * 0.02562 * 22 21 20 24 24 C 1.53006 * 109.47284 * 155.00138 * 23 22 21 25 25 C 1.53005 * 109.47041 * 274.99261 * 23 22 21 26 26 N 1.32607 * 120.93975 * 359.97438 * 21 20 19 27 27 C 1.31679 * 121.64008 * 359.76998 * 26 21 20 28 28 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46768 * 300.00028 * 1 2 3 30 30 H 1.08995 * 109.47110 * 59.99748 * 1 2 3 31 31 H 1.09007 * 109.46693 * 60.00395 * 5 3 2 32 32 H 1.09000 * 109.47122 * 300.00182 * 5 3 2 33 33 H 1.09007 * 109.46844 * 60.00699 * 6 5 3 34 34 H 1.09001 * 109.47318 * 300.00727 * 6 5 3 35 35 H 0.96995 * 120.00371 * 180.02562 * 11 10 8 36 36 H 1.07992 * 120.75383 * 359.96347 * 19 18 16 37 37 H 1.08003 * 120.30223 * 179.97438 * 20 19 18 38 38 H 0.97002 * 120.00134 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47454 * 34.99543 * 23 22 21 40 40 H 1.08996 * 109.47361 * 59.99348 * 24 23 22 41 41 H 1.08997 * 109.47299 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46674 * 299.99402 * 24 23 22 43 43 H 1.09006 * 109.46567 * 60.00223 * 25 23 22 44 44 H 1.09005 * 109.47199 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47227 * 300.00421 * 25 23 22 46 46 H 1.07994 * 119.74315 * 180.24572 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8186 -0.0002 8 6 6.1387 3.0099 -1.1757 9 1 6.9774 2.3771 -1.4256 10 6 5.7484 4.0222 -2.0449 11 7 6.2506 4.0766 -3.2577 12 14 4.5099 5.3051 -1.4884 13 1 4.9764 5.9276 -0.2234 14 1 4.3760 6.3504 -2.5345 15 1 3.1926 4.6571 -1.2647 16 6 6.1442 2.7009 1.1569 17 8 5.5486 2.4736 2.1927 18 6 7.6112 2.8476 1.1670 19 6 8.3836 2.2137 2.1534 20 6 9.7420 2.3771 2.1239 21 6 10.3150 3.1610 1.1236 22 7 11.6892 3.3288 1.0911 23 6 12.5298 2.6843 2.1030 24 6 13.9392 2.4829 1.5424 25 6 12.5985 3.5702 3.3486 26 7 9.5630 3.7482 0.2027 27 6 8.2532 3.6132 0.1916 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9564 0.7805 -0.8893 32 1 3.9557 0.7808 0.8908 33 1 3.6102 3.2366 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 5.9786 4.7832 -3.8640 36 1 7.9163 1.6111 2.9181 37 1 10.3642 1.9032 2.8686 38 1 12.0951 3.8730 0.3984 39 1 12.1026 1.7172 2.3681 40 1 14.3664 3.4500 1.2773 41 1 14.5648 2.0038 2.2954 42 1 13.8903 1.8517 0.6550 43 1 11.5944 3.7137 3.7481 44 1 13.2236 3.0905 4.1018 45 1 13.0257 4.5373 3.0836 46 1 7.6707 4.1020 -0.5753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:11 Heat of formation + Delta-G solvation = -65.457154 kcal Electronic energy + Delta-G solvation = -29058.500729 eV Core-core repulsion = 24949.208560 eV Total energy + Delta-G solvation = -4109.292169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.26139 -39.96694 -38.63625 -36.74903 -36.29353 -35.17749 -32.63541 -32.22230 -31.57397 -30.93630 -28.67764 -27.54982 -27.31614 -25.15810 -24.32347 -23.25565 -22.32621 -20.83816 -20.51463 -19.32445 -17.81388 -17.47958 -17.07917 -16.59079 -16.44919 -16.28807 -15.91142 -15.11383 -14.79432 -14.64366 -14.29139 -14.05482 -13.92826 -13.75313 -13.34913 -13.06426 -12.93973 -12.78448 -12.70915 -12.49041 -12.42599 -12.36085 -12.19562 -12.05284 -11.82411 -11.61750 -11.40801 -11.14563 -11.10520 -10.91522 -10.64859 -10.26061 -10.14871 -9.83670 -9.74005 -9.46104 -9.19739 -8.78926 -8.57395 -7.83704 -7.29911 -6.55097 -4.31116 1.68617 1.99150 2.51975 2.92338 3.10097 3.21905 3.27026 3.32650 3.78896 4.07636 4.33299 4.59936 4.65199 4.84936 4.92139 5.01271 5.15031 5.16855 5.22900 5.29168 5.32088 5.38085 5.52047 5.56741 5.58106 5.60826 5.65608 5.69684 5.78405 5.81673 5.91231 5.97046 6.07863 6.10281 6.38422 6.41123 6.52999 6.61196 6.66769 6.84193 7.21938 7.29040 7.44245 7.84892 7.96505 8.03111 8.15397 8.74590 8.83173 9.19113 9.54870 10.52036 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003107 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.583695 B = 9010.606678 C =10180.738043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.102 3.898 7 N -0.465 5.465 8 C -0.352 4.352 9 H 0.107 0.893 10 C 0.071 3.929 11 N -0.853 5.853 12 Si 0.863 3.137 13 H -0.262 1.262 14 H -0.285 1.285 15 H -0.248 1.248 16 C 0.542 3.458 17 O -0.592 6.592 18 C -0.224 4.224 19 C 0.006 3.994 20 C -0.265 4.265 21 C 0.406 3.594 22 N -0.722 5.722 23 C 0.146 3.854 24 C -0.159 4.159 25 C -0.170 4.170 26 N -0.555 5.555 27 C 0.203 3.797 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.279 0.721 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -5.212 7.097 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.021 4.021 7 N -0.186 5.186 8 C -0.479 4.479 9 H 0.125 0.875 10 C -0.138 4.138 11 N -0.486 5.486 12 Si 0.690 3.310 13 H -0.186 1.186 14 H -0.211 1.211 15 H -0.173 1.173 16 C 0.333 3.667 17 O -0.476 6.476 18 C -0.232 4.232 19 C -0.020 4.020 20 C -0.289 4.289 21 C 0.171 3.829 22 N -0.355 5.355 23 C 0.040 3.960 24 C -0.217 4.217 25 C -0.229 4.229 26 N -0.272 5.272 27 C 0.046 3.954 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.891 -4.526 6.903 10.141 hybrid contribution -1.026 0.332 0.394 1.148 sum 4.865 -4.194 7.297 9.721 Atomic orbital electron populations 1.23195 0.77158 1.03200 1.02368 1.86539 1.22889 1.34119 1.84454 1.24057 0.92361 0.80975 0.71561 1.90645 1.67377 1.36322 1.45492 1.21822 0.86004 1.02080 1.06246 1.21899 0.83153 0.93214 1.03833 1.43513 1.03679 1.64865 1.06534 1.19047 1.16851 1.16837 0.95193 0.87538 1.25500 0.96675 0.96806 0.94867 1.69652 1.41715 1.32501 1.04739 0.87349 0.82711 0.81559 0.79426 1.18590 1.21115 1.17343 1.18178 0.86750 0.78775 0.82992 1.90635 1.70533 1.53898 1.32577 1.20549 0.94719 1.07392 1.00509 1.21049 0.92423 0.93489 0.95036 1.20913 0.95646 1.08739 1.03624 1.18650 0.85251 0.89333 0.89662 1.44443 1.02313 1.55842 1.32949 1.20907 0.90647 0.96310 0.88096 1.22052 0.95351 1.02482 1.01830 1.22320 1.02613 1.00380 0.97572 1.67553 1.07786 1.26291 1.25610 1.24444 0.87680 0.89753 0.93542 0.88467 0.92133 0.92090 0.87011 0.87438 0.90964 0.88637 0.91011 0.85122 0.85760 0.76321 0.90078 0.92079 0.91103 0.91848 0.91976 0.91881 0.92347 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.63 10.56 -39.26 -0.41 -6.05 16 3 C 0.47 8.46 7.96 36.00 0.29 8.75 16 4 O -0.51 -10.47 15.73 -18.75 -0.29 -10.76 16 5 C -0.12 -2.28 6.06 -27.88 -0.17 -2.45 16 6 C 0.10 2.23 2.97 -4.04 -0.01 2.21 16 7 N -0.47 -10.71 2.03 -116.02 -0.24 -10.95 16 8 C -0.35 -8.52 6.28 -14.99 -0.09 -8.62 16 9 H 0.11 2.77 7.21 -52.49 -0.38 2.39 16 10 C 0.07 1.76 4.83 -17.46 -0.08 1.68 16 11 N -0.85 -22.18 13.95 55.50 0.77 -21.40 16 12 Si 0.86 19.72 25.92 -169.99 -4.41 15.32 16 13 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.25 -5.58 5.53 56.52 0.31 -5.27 16 16 C 0.54 12.52 7.38 -12.51 -0.09 12.42 16 17 O -0.59 -14.41 16.20 5.26 0.09 -14.33 16 18 C -0.22 -4.77 5.62 -104.81 -0.59 -5.36 16 19 C 0.01 0.12 9.66 -39.27 -0.38 -0.26 16 20 C -0.26 -4.24 8.74 -39.65 -0.35 -4.58 16 21 C 0.41 6.88 7.62 -155.26 -1.18 5.70 16 22 N -0.72 -9.39 5.22 -53.95 -0.28 -9.68 16 23 C 0.15 1.41 2.86 -67.93 -0.19 1.22 16 24 C -0.16 -1.18 9.38 37.16 0.35 -0.83 16 25 C -0.17 -1.53 9.39 37.16 0.35 -1.18 16 26 N -0.56 -11.13 10.38 -12.12 -0.13 -11.25 16 27 C 0.20 4.39 9.23 -17.10 -0.16 4.24 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.69 8.13 -51.92 -0.42 0.27 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 32 H 0.11 1.96 7.91 -51.93 -0.41 1.55 16 33 H 0.07 1.63 7.67 -51.93 -0.40 1.23 16 34 H 0.10 2.17 3.73 -51.93 -0.19 1.98 16 35 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.21 7.94 -52.49 -0.42 1.80 16 37 H 0.12 1.61 6.01 -52.48 -0.32 1.29 16 38 H 0.40 4.99 8.72 -40.82 -0.36 4.63 16 39 H 0.08 0.79 6.42 -51.93 -0.33 0.46 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.66 7.63 -51.93 -0.40 0.26 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.20 4.76 4.81 -52.49 -0.25 4.51 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -29.79 377.89 -6.93 -36.72 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.48 Total: 12.28 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -1.25 Total: 14.41 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.13 Total: -53.28 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.62 Total: -31.14 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.41 Total: 15.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.79 -6.93 -36.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.738 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds