Wall clock time and date at job start Tue Mar 31 2020 19:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00521 * 2 1 4 4 O 1.20824 * 119.99518 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00392 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47116 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47037 * 180.02562 * 6 5 3 8 8 C 1.36915 * 120.00232 * 97.57518 * 7 6 5 9 9 H 1.07992 * 119.99870 * 228.70917 * 8 7 6 10 10 C 1.39017 * 119.99963 * 48.97629 * 8 7 6 11 11 N 1.31379 * 120.00091 * 190.72121 * 10 8 7 12 12 Si 1.86802 * 119.99925 * 10.71927 * 10 8 7 13 13 H 1.48503 * 109.47137 * 53.80199 * 12 10 8 14 14 H 1.48496 * 109.47043 * 173.80444 * 12 10 8 15 15 H 1.48497 * 109.47076 * 293.80536 * 12 10 8 16 16 C 1.34783 * 119.99942 * 277.57023 * 7 6 5 17 17 O 1.21624 * 120.00013 * 3.16881 * 16 7 6 18 18 C 1.47438 * 119.99536 * 183.16661 * 16 7 6 19 19 C 1.40412 * 120.47892 * 206.67215 * 18 16 7 20 20 C 1.36844 * 118.48553 * 179.97438 * 19 18 16 21 21 C 1.39405 * 119.38731 * 359.97438 * 20 19 18 22 22 N 1.38471 * 119.53122 * 179.97438 * 21 20 19 23 23 C 1.46494 * 119.99883 * 0.02562 * 22 21 20 24 24 C 1.53006 * 109.47284 * 155.00138 * 23 22 21 25 25 C 1.53005 * 109.47041 * 274.99261 * 23 22 21 26 26 N 1.32607 * 120.93975 * 359.97438 * 21 20 19 27 27 C 1.31679 * 121.64008 * 359.76998 * 26 21 20 28 28 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46768 * 300.00028 * 1 2 3 30 30 H 1.08995 * 109.47110 * 59.99748 * 1 2 3 31 31 H 1.09007 * 109.46693 * 60.00395 * 5 3 2 32 32 H 1.09000 * 109.47122 * 300.00182 * 5 3 2 33 33 H 1.09007 * 109.46844 * 60.00699 * 6 5 3 34 34 H 1.09001 * 109.47318 * 300.00727 * 6 5 3 35 35 H 0.96995 * 120.00371 * 180.02562 * 11 10 8 36 36 H 1.07992 * 120.75383 * 359.96347 * 19 18 16 37 37 H 1.08003 * 120.30223 * 179.97438 * 20 19 18 38 38 H 0.97002 * 120.00134 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47454 * 34.99543 * 23 22 21 40 40 H 1.08996 * 109.47361 * 59.99348 * 24 23 22 41 41 H 1.08997 * 109.47299 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46674 * 299.99402 * 24 23 22 43 43 H 1.09006 * 109.46567 * 60.00223 * 25 23 22 44 44 H 1.09005 * 109.47199 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47227 * 300.00421 * 25 23 22 46 46 H 1.07994 * 119.74315 * 180.24572 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8186 -0.0002 8 6 6.1387 3.0099 -1.1757 9 1 6.9774 2.3771 -1.4256 10 6 5.7484 4.0222 -2.0449 11 7 6.2506 4.0766 -3.2577 12 14 4.5099 5.3051 -1.4884 13 1 4.9764 5.9276 -0.2234 14 1 4.3760 6.3504 -2.5345 15 1 3.1926 4.6571 -1.2647 16 6 6.1442 2.7009 1.1569 17 8 5.5486 2.4736 2.1927 18 6 7.6112 2.8476 1.1670 19 6 8.3836 2.2137 2.1534 20 6 9.7420 2.3771 2.1239 21 6 10.3150 3.1610 1.1236 22 7 11.6892 3.3288 1.0911 23 6 12.5298 2.6843 2.1030 24 6 13.9392 2.4829 1.5424 25 6 12.5985 3.5702 3.3486 26 7 9.5630 3.7482 0.2027 27 6 8.2532 3.6132 0.1916 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9564 0.7805 -0.8893 32 1 3.9557 0.7808 0.8908 33 1 3.6102 3.2366 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 5.9786 4.7832 -3.8640 36 1 7.9163 1.6111 2.9181 37 1 10.3642 1.9032 2.8686 38 1 12.0951 3.8730 0.3984 39 1 12.1026 1.7172 2.3681 40 1 14.3664 3.4500 1.2773 41 1 14.5648 2.0038 2.2954 42 1 13.8903 1.8517 0.6550 43 1 11.5944 3.7137 3.7481 44 1 13.2236 3.0905 4.1018 45 1 13.0257 4.5373 3.0836 46 1 7.6707 4.1020 -0.5753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:10 Heat of formation + Delta-G solvation = -83.604287 kcal Electronic energy + Delta-G solvation = -29059.287648 eV Core-core repulsion = 24949.208560 eV Total energy + Delta-G solvation = -4110.079088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74795 -41.40651 -40.22565 -37.86661 -37.65260 -36.98733 -34.34371 -33.69186 -33.01440 -32.39186 -29.99503 -28.64473 -28.02749 -27.03366 -25.82414 -24.65304 -23.76812 -21.96401 -21.82888 -21.06451 -19.50050 -18.82278 -18.45699 -18.20316 -17.88625 -17.60785 -17.36856 -16.59137 -16.25505 -16.10177 -15.63855 -15.41031 -15.30992 -15.17354 -14.62852 -14.54264 -14.46812 -14.26891 -14.03274 -13.88085 -13.73243 -13.65561 -13.37781 -13.01896 -12.98633 -12.97091 -12.80158 -12.63381 -12.28274 -12.08808 -11.89879 -11.84608 -11.67224 -11.57422 -11.21875 -11.07613 -10.62924 -10.59178 -10.19202 -9.70332 -8.62404 -8.49646 -6.25090 0.16503 0.53593 1.08615 1.24316 1.34055 1.38868 1.61540 2.06705 2.18296 2.22270 2.65173 2.84845 3.19170 3.74394 3.79858 3.92776 3.98167 4.09034 4.10532 4.17517 4.25027 4.29366 4.30089 4.31275 4.32893 4.47064 4.48364 4.68293 4.72407 4.79945 4.86372 4.88036 4.94777 4.98399 5.03272 5.17014 5.28411 5.29989 5.38292 5.41352 5.47178 5.73284 6.07037 6.16284 6.22973 6.62228 6.64718 6.91611 7.30149 7.33320 7.69856 8.60799 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003107 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.583695 B = 9010.606678 C =10180.738043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.539 6.539 5 C -0.115 4.115 6 C 0.101 3.899 7 N -0.472 5.472 8 C -0.332 4.332 9 H 0.085 0.915 10 C 0.046 3.954 11 N -0.886 5.886 12 Si 0.900 3.100 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.243 1.243 16 C 0.540 3.460 17 O -0.608 6.608 18 C -0.254 4.254 19 C 0.008 3.992 20 C -0.248 4.248 21 C 0.407 3.593 22 N -0.710 5.710 23 C 0.138 3.862 24 C -0.154 4.154 25 C -0.166 4.166 26 N -0.579 5.579 27 C 0.194 3.806 28 H 0.137 0.863 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.282 0.718 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.404 0.596 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -6.612 8.715 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.319 3.681 4 O -0.429 6.429 5 C -0.154 4.154 6 C -0.022 4.022 7 N -0.192 5.192 8 C -0.460 4.460 9 H 0.103 0.897 10 C -0.160 4.160 11 N -0.521 5.521 12 Si 0.726 3.274 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.168 1.168 16 C 0.332 3.668 17 O -0.495 6.495 18 C -0.262 4.262 19 C -0.018 4.018 20 C -0.272 4.272 21 C 0.169 3.831 22 N -0.342 5.342 23 C 0.034 3.966 24 C -0.211 4.211 25 C -0.225 4.225 26 N -0.298 5.298 27 C 0.036 3.964 28 H 0.155 0.845 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.240 0.760 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.290 -5.950 8.528 12.699 hybrid contribution -1.275 0.694 -0.003 1.452 sum 6.015 -5.255 8.525 11.682 Atomic orbital electron populations 1.23600 0.74630 1.05922 1.02551 1.86510 1.25249 1.32275 1.83695 1.23775 0.91994 0.81355 0.70962 1.90634 1.67865 1.37390 1.47003 1.21627 0.87018 0.99822 1.06913 1.21814 0.82350 0.95332 1.02668 1.43555 1.04179 1.65258 1.06249 1.18732 1.16068 1.16006 0.95164 0.89732 1.25798 0.97713 0.97675 0.94829 1.69695 1.43328 1.33491 1.05607 0.86771 0.81712 0.80324 0.78574 1.19790 1.20536 1.16835 1.18503 0.87676 0.77992 0.82602 1.90602 1.71153 1.54800 1.32910 1.20476 0.93814 1.09631 1.02282 1.21237 0.93200 0.93054 0.94344 1.21231 0.95073 1.07409 1.03521 1.18966 0.86605 0.88500 0.88987 1.44758 1.01002 1.54994 1.33420 1.21255 0.91323 0.96332 0.87669 1.22026 0.93964 1.02911 1.02227 1.22290 1.02169 1.00453 0.97584 1.67466 1.07272 1.27802 1.27257 1.23885 0.88471 0.90546 0.93481 0.84496 0.91956 0.92001 0.86119 0.86956 0.92095 0.89667 0.90796 0.83726 0.81922 0.75994 0.89475 0.91653 0.88804 0.92356 0.93611 0.89291 0.92488 0.80891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.65 10.56 -51.42 -0.54 -11.19 16 3 C 0.47 16.97 7.96 71.24 0.57 17.53 16 4 O -0.54 -22.03 15.73 21.97 0.35 -21.68 16 5 C -0.12 -4.29 6.06 29.85 0.18 -4.11 16 6 C 0.10 4.50 2.97 86.38 0.26 4.76 16 7 N -0.47 -22.33 2.03 -639.23 -1.30 -23.63 16 8 C -0.33 -16.69 6.28 84.09 0.53 -16.16 16 9 H 0.09 4.62 7.21 -2.91 -0.02 4.60 16 10 C 0.05 2.37 4.83 84.95 0.41 2.78 16 11 N -0.89 -47.51 13.95 21.68 0.30 -47.21 16 12 Si 0.90 41.69 25.92 68.60 1.78 43.46 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.24 -11.01 5.53 99.48 0.55 -10.46 16 16 C 0.54 25.48 7.38 86.67 0.64 26.12 16 17 O -0.61 -29.94 16.20 -4.11 -0.07 -30.00 16 18 C -0.25 -10.98 5.62 -19.99 -0.11 -11.09 16 19 C 0.01 0.27 9.66 22.47 0.22 0.49 16 20 C -0.25 -7.38 8.74 22.22 0.19 -7.19 16 21 C 0.41 13.23 7.62 133.25 1.01 14.24 16 22 N -0.71 -16.95 5.22 -324.61 -1.70 -18.64 16 23 C 0.14 2.20 2.86 45.00 0.13 2.33 16 24 C -0.15 -1.73 9.38 71.98 0.68 -1.06 16 25 C -0.17 -2.42 9.39 71.98 0.68 -1.74 16 26 N -0.58 -23.46 10.38 -192.25 -2.00 -25.46 16 27 C 0.19 8.67 9.23 85.05 0.79 9.45 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.32 8.13 -2.38 -0.02 1.30 16 30 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.12 4.26 8.14 -2.38 -0.02 4.24 16 32 H 0.11 4.08 7.91 -2.39 -0.02 4.06 16 33 H 0.06 2.82 7.67 -2.38 -0.02 2.80 16 34 H 0.09 3.95 3.73 -2.39 -0.01 3.94 16 35 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.15 4.66 7.94 -2.91 -0.02 4.63 16 37 H 0.16 3.54 6.01 -2.91 -0.02 3.52 16 38 H 0.40 9.36 8.72 -92.71 -0.81 8.55 16 39 H 0.09 1.33 6.42 -2.39 -0.02 1.32 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.04 0.83 7.63 -2.38 -0.02 0.81 16 44 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.17 8.67 4.81 -2.91 -0.01 8.66 16 Total: -1.00 -66.36 377.89 4.24 -62.12 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.05 Total: 34.13 kcal Atomic # 6 Polarization: 30.76 SS G_CDS: 7.36 Total: 38.12 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.69 Total: -114.94 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -0.26 Total: -62.88 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.78 Total: 43.46 kcal Total: -66.36 4.24 -62.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.488 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds